Gabriella Doronzo
Elena Astanina
Federico Bussolino- 1Department of Oncology, University of Torino, Candiolo, Italy
- 2Laboratory of Vascular Oncology, Candiolo Cancer Institute-IRCCS-FPO, Candiolo, Italy
Transcription factor EB (TFEB) represents an emerging player in vascular biology. It belongs to the bHLH-leucine zipper transcription factor microphthalmia family, which includes microphthalmia-associated transcription factor, transcription factor E3 and transcription factor EC, and is known to be deregulated in cancer. The canonical transcriptional pathway orchestrated by TFEB adapts cells to stress in all kinds of tissues by supporting lysosomal and autophagosome biogenesis. However, emerging findings highlight that TFEB activates other genetic programs involved in cell proliferation, metabolism, inflammation and immunity. Here, we first summarize the general principles and mechanisms by which TFEB activates its transcriptional program. Then, we analyze the current knowledge of TFEB in the vascular system, placing particular emphasis on its regulatory role in angiogenesis and on the involvement of the vascular unit in inflammation and atherosclerosis.
Introduction
The vascular unit is characterized by endothelial cells (ECs) lying on a basal membrane, where pericytes are embedded. Located at the interface between the bloodstream and tissues, the vascular unit orchestrates bidirectional information by integrating humoral, mechanical and cellular cues during the embryonic organogenesis process and in adults; this unit also plays a role in communicable and non-communicable diseases (Peng et al., 2019). Consequently, the vascular unit and, in particular, ECs undergo different genetic programs (Mantovani et al., 1997) regulated by specific transcription factors that adjust the transcriptional landscape to properly respond to different pathophysiological stimuli (De Val and Black, 2009; Park et al., 2013; Vanlandewijck et al., 2018).
Emerging evidence underlines autophagy as a key cellular mechanism involved in vessel development and physiological and pathological angiogenesis (Schaaf et al., 2019). Moreover, autophagy occurs on the basis of dynamic EC responses to changing environments, angiogenic cues, or intrinsic and extrinsic insults or injuries (such as metabolic stress, redox homeostasis and hypoxia). Activation of endothelial autophagy, as in other cell types, is mediated by different signaling pathways that are capable of regulating the autophagy-related gene complex, which controls various stages of the process as well as autophagosome formation and elongation, vesicle trafficking, and autophagosome lysosome fusion (Choi et al., 2013).
Transcription factor EB (TFEB) belongs to the microphthalmia (MiT) gene family of bHLH-leucine zipper transcription factors, which includes microphthalmia-associated transcription factor (MITF), TFE3 and TFEC. It was originally described to be translocated in a subset of renal carcinomas (Argani et al., 2005) and deregulated in melanomas and several carcinomas (Astanina et al., 2020). The current findings clearly support the existence of a canonical pathway by which TFEB acts as a master regulator of lysosomal and autophagosome biogenesis and represents a molecular tool to adapt cells to stress, including starvation and energy depletion (Sardiello et al., 2009; Napolitano and Ballabio, 2016; Saftig and Puertollano, 2020). TFEB directly promotes the transcription of some genes directly involved in autophagy (ATG9, UVRAG, VPS11, VPS18, and WIPI) and regulates autophagic flux (Settembre et al., 2011). Furthermore, it controls the expression of genes that orchestrate the expression, localization, entrance, influx, and performance of lysosomal and non-lysosomal enzymes participating in the destruction of cellular macromolecules (Sardiello et al., 2009; Palmieri et al., 2011; Settembre et al., 2011). In addition, TFEB can promote lysosomal exocytosis, allowing cargo secretion through fusion to the cell membrane (Medina et al., 2015).
In addition to the canonical pathway, new results definitively demonstrate wider regulatory activities encompassing metabolism, immunity, angiogenesis and inflammation, which are not necessarily associated with autophagy [see the following reviews: (Napolitano and Ballabio, 2016; Astanina et al., 2020; Irazoqui, 2020; Yu et al., 2020)] and refer to non-canonical pathways.
This review summarizes our current understanding of the functions of TFEB in regulating EC activities in embryos and adults (Figure 1).
Figure 1. General and vascular activities of TFEB. The expression of TFEB is regulated by a several transcription factors and the most powerful stimulus to promote its nuclear translocation is mediated by cellular stress and cell starvation. The programs triggered by TFEB recognize the canonical autophagy pathway but it is emerging that this molecule regulates the cell transcriptional landscape independently from the control of autophagic flux (for details, see text).
Table 1. Posttranslational modifications of TFEB *.
Structure of TFEB
Transcription factor EB is a transcription factor with low tissue and cellular specificity that is widely expressed in fetuses and adults (Napolitano and Ballabio, 2016). The DNA-binding region is characterized by a helix-loop-helix (HLH) and a leucine zipper domain (Zip) flanked by an upstream basic region that is able to recognize an E-box sequence (CAYGTG) in the promoter regions of targeted genes (Carr and Sharp, 1990; Fisher et al., 1991; Palmieri et al., 2011; Doronzo et al., 2019). The Zip domain is essential for homodimerization or heterooligomerization with other MiT genes. The TFEB structure is also characterized by a glutamine- and proline-rich domain, which has poorly described functions that are discussed in Box 1.
BOX 1. Structure of TFEB (Figure 2).
TFEB has been highly conserved throughout evolution and is present in flies, fishes, avians, and mammals (Steingrímsson et al., 1998; Hallsson et al., 2004; Lister et al., 2011; Lapierre et al., 2013), exhibiting similar genomic organization and structural features. Human TFEB is constituted by 476 amino acids and has a mass of ∼53 kDa. TFEB spans approximately 51,000 bp and is located on chromosome 6, whereas mouse Tfeb (475 amino acids) is on chromosome 17 and extends over 55,000 bp. Genomic organization analysis of the human gene unveiled the presence of nine exons, each of which is spliced to the common coding exons 2–9 (Kuiper et al., 2004). This organization generates a 2,364 bp mRNA transcript consisting of two non-coding exons and eight coding exons, with a 302-bp 5′ UTR followed by a start codon in exon 3 and a stop codon in exon 10, followed by a 621 bp 3′ UTR. Seven alternative mRNAs with the same translational start site at exon 2 have been described with differential and restricted tissue distributions (Kuiper et al., 2004; Vu et al., 2021). The mouse TFEB protein is 94% identical to its human ortholog, sharing domain structure organization and posttranslational modification sites (Steingrímsson et al., 2004).
As the other member of the MiT gene family, the bHLH (position 235–288) and Zip (position 298–319) domains establish the DNA binding region. The activation domain (AD) is mapped at position 156–165 and predicts a binding site for the transcriptional coactivator p300 (Muhle-Goll et al., 1994). In the absence of DNA, a tetramer-sized form of TFEB is formed that dissociates to bind added DNA as a dimer (Fisher et al., 1991; Muhle-Goll et al., 1994). The TFEB structure also contains a N-terminus glutamine-rich region (position 10–44) encompassing the binding site of Rag C and a C-terminal proline-rich region (position 366–414) with undetermined functions. Of note, this domain is also present in TFE3, where it has activating functions (Artandi et al., 1995). The abilities of TFEB to promote autophagy and lysosome biogenesis are mediated by a palindromic consensus sequence (GTCACGTGAC) overlapping the E-Box sequence, named the coordinated lysosomal expression and regulation motif (CLEAR) (Sardiello et al., 2009; Palmieri et al., 2011; Settembre et al., 2011).
Mechanisms Involved in TFEB Activation
Transcription factor EB is localized in the cytosol in an inactive state induced mainly by the phosphorylation of specific amino acid residues and translocates to the nucleus to start specific transcriptional programs when dephosphorylated (Figure 2).
Figure 2. Signaling mechanisms regulating TFEB nuclear translocation in normal (A) and stressed conditions (B). (A) TFEB binds GTP- RagGTPase on the surface of lysosome followed by the recruitment of Raptor and mTOR. This complex allows the phosphorylation of TFEB, which interacts with 14-3-3 adaptor with subsequent degradation. (B) In stressed conditions, calcium ions released from lysosomes through mucolipin 1 channel activates the protein phosphatase calcineurin, (CN) which dephosphorylates TFEB, allowing its nuclear translocation.
The expression of TFEB is transcriptionally regulated by several factors, including androgen receptor (Shang et al., 2020), peroxisome proliferator-activated receptor-γ coactivator 1α (PPARGC1α), retinoid X receptor-α (RXRα), the peroxisome proliferator-activated receptor-α (PPARα) complex (Salma et al., 2017; Byun et al., 2020), cAMP response element-binding protein (CREB), the CREB-regulated transcription coactivator 2 complex (Seok et al., 2014), ETS2 (Ma et al., 2016), Krüppel-like factor 2 (KLF2) (Song et al., 2019), MYC (Annunziata et al., 2019), XBP1 (Zhang Z. et al., 2020) and TFEB itself (Settembre et al., 2011).
Interestingly, some of these transcription factors (PPARGC1α, CREB, and MYC) are involved in the metabolic regulation and reprogramming observed in stressed conditions and cancer (Stine et al., 2015; Dubois et al., 2017; Berdeaux and Hutchins, 2019).
A wide number of transcription factors promoting TFEB activation indicate that it might participate in many biological functions, but the external cues regulating TFEB transcription and activation are poorly investigated. However, the available findings strongly indicate that TFEB regulates energy homeostasis under the direct or indirect control of the two metabolic sensors mTOR and AMP-activated protein kinase (AMPK) both in physiological and pathologic settings.
The most defined system, which restricts TFEB to the cytosol, thus blocking its nuclear translocation, is represented by mTORC1 (Roczniak-Ferguson et al., 2012; Settembre et al., 2012; Palmieri et al., 2017; Vega-Rubin-de-Celis et al., 2017) and Rag GTPases, which localize both mTORC1 and TFEB itself on the cytosolic surface of lysosomes and degrade TFEB (Settembre et al., 2012; Martina and Puertollano, 2013; Petit et al., 2013; Di Malta et al., 2017). Therefore, when cells are fed, activated mTORC1 regulates anabolic pathways and phosphorylates TFEB, impeding its nuclear translocation.
Activated protein kinase exerts a mirrored function. In the absence of nutrient availability, AMPK promotes the dephosphorylation of TFEB and its translocation to the nucleus (Collodet et al., 2019; El-Houjeiri et al., 2019). At present, this dephosphorylation mechanism is unknown.
In addition to phosphorylation, other posttranslational modifications, including dephosphorylation (Settembre et al., 2011, 2012; Roczniak-Ferguson et al., 2012; Ferron et al., 2013; Medina et al., 2015; Li et al., 2016; Palmieri et al., 2017; Vega-Rubin-de-Celis et al., 2017; Hsu et al., 2018; Martina and Puertollano, 2018; Zhang et al., 2018), acetylation/deacetylation (Miller et al., 2005; Bao et al., 2016; Wang et al., 2020) and sumoylation (Napolitano et al., 2020), regulate nuclear-cytosolic shuttling and nuclear activity (Box 2).
BOX 2. Posttranslational modifications regulate TFEB transcriptional activity (Table 1).
TFEB phosphorylation
TFEB phosphorylation is required for the control of both nuclear entry and export. The phosphorylation of Ser 122, 142, and 211 (Settembre et al., 2011, 2012; Martina et al., 2012; Roczniak-Ferguson et al., 2012; Vega-Rubin-de-Celis et al., 2017) is required for TFEB degradation, while Ser 462, 463, 466, 467 and 469 likely favor its activation, as inferred from the observation that the substitution of these residues with phosphomimetic aspartate forces TFEB nuclear translocation (Peña-Llopis et al., 2011). Many phosphorylation events occur at the lysosomal surface and are mediated by mTORC1. (Roczniak-Ferguson et al., 2012; Settembre et al., 2012; Palmieri et al., 2017; Vega-Rubin-de-Celis et al., 2017). The first 30 amino acid residues of TFEB bind Rag GTPase in the GTP active binding configuration (Martina and Puertollano, 2013) and allow its localization on the cytosolic membrane of lysosomes (Settembre et al., 2012; Martina and Puertollano, 2013; Petit et al., 2013; Di Malta et al., 2017). This interaction is crucial for the recruitment of mTOR and Raptor (regulatory associated protein of mTOR) and promote mTOR-dependent TFEB phosphorylation.
Once Ser 211 is phosphorylated, TFEB is released from the lysosomal surface and bound by the 14-3-3 scaffold protein, rendering it inactive in the cytosol (Settembre et al., 2011, 2012; Roczniak-Ferguson et al., 2012; Vega-Rubin-de-Celis et al., 2017). Phosphorylation of Ser 142 and 211 induce the degradation of TFEB through the ubiquitin-proteasome pathway (Sha et al., 2017), while Ser 122 enhances the effect of phosphorylated Ser 211 (Vega-Rubin-de-Celis et al., 2017).
In low nutrient conditions, the Rag GTPase in the GTP-active configuration is inactivated by two GTPase-activating proteins named GATOR 1 and Folliculin, resulting in the release of mTOR in the cytosol (Saxton and Sabatini, 2017).
In addition to mTOR, extracellular signal-regulated kinase (ERK) 2, mitogen-activated protein kinase kinase kinase 3 (MAP3K3), glycogen synthase kinase (GSK)3β, protein kinase Cβ (Ferron et al., 2013) and AKT (Palmieri et al., 2017) recognize TFEB as a substrate and differentially regulate its fate. ERK2 (Settembre et al., 2011, 2012), GSK 3β (Li et al., 2016) and AKT (Palmieri et al., 2017) contribute to TFEB retention in the cytosol, protein kinase Cβ stabilizes TFEB and cooperates with mTOR (Ferron et al., 2013), and MAP3K3 antagonizes TFEB phosphorylation by mTORC1(Hsu et al., 2018).
A particular mechanism is played by phosphatase calcineurin, which is activated by calcium released from lysosomes in stressed conditions and dephosphorylates TFEB at Ser 211 and 142, thus inducing its nuclear translocation (Medina et al., 2015). Similarly, protein phosphatase 2A activated by oxidative stress dephosphorylates TFEB at the Ser 109, 114, 122 and 211 residues (Martina and Puertollano, 2018.
Phosphorylation is also involved in regulating the export of TFEB from the nucleus to the cytosol when its transcriptional activity needs to be interrupted. A hydrophobic nuclear export sequence has been mapped at residues 129–152 and encompasses Ser 142 and 138. Interestingly, the phosphorylation of Ser 142 by mTOR or ERK2 primes the nuclear export sequence for phosphorylation by GSK β at Ser 138, achieving an efficient nuclear export through exportin-1 (Li et al., 2018; Napolitano et al., 2018). Finally, TFEB activates the transcription of cyclin−dependent kinase (CDK) 4 (Doronzo et al., 2019), which may phosphorylate TFEB at Ser 142, thus allowing its nuclear export (Yin et al., 2020) and damping TFEB-mediated cell cycle activation (Brady et al., 2018; Doronzo et al., 2019).
TFEB acetylation and deacetylation
TFEB contains some Lys residues, which are substrates of acetylating and deacetylating enzymes, and acetylation appears to inhibit TFEB dimerization and its capability to bind the promoter regions of target genes (Wang et al., 2020). In microglia, the deacetylating enzyme sirtuin-1 binds and deacetylates TFEB at the Lys116 residue, thus increasing its transcriptional function (Bao et al., 2016). In contrast, in cancer cell lines, inhibitors of histone deacetylases indirectly favor acetylation of Lys 91, 103, 116, and 430 at the nuclear level (Zhang et al., 2018) and increase TFEB transcriptional activity. Finally, it has been reported that histone deacetylase can bind the TFEB promoter to inhibit its expression (Annunziata et al., 2019). The data available are partially conflicting and might suggest that the effects of these posttranslational modifications depend on the cellular context.
A Paradigmatic Example of the Multifaceted Role of TFEB in Pathology: Cancer
The regulatory role of mTOR and AMPK on TFEB is part of the complex metabolic scenario occurring in cancer. TFEB is deactivated by mTORC1 under the condition of nutrient availability via its cytoplasmic retention but also controls mTORC1 lysosomal recruitment, which is required for its activation, creating a mechanism for transducing the information of the cell energy environment into the switch between anabolic and catabolic pathways (Perera et al., 2015; Di Malta et al., 2017; Li et al., 2019). Upregulation of TFEB in several cancers, such as pancreatic adenocarcinoma, melanoma, renal cell carcinoma colorectal cancer and non-small cell lung cancer (Davis et al., 2010; Liang et al., 2010; Giatromanolaki et al., 2015; Li et al., 2019), promotes cancer progression via mTORC1 hyperactivation signaling to promote cell proliferation and boost autophagy, producing an intracellular pool of nutrients, most importantly amino acids, and thus supporting cancer growth. Moreover, in pancreatic cancer, TFEB-induced autophagic activation leads to cancer progression via increased migration and metastasis of cancer cells due to endocytosis of Itgα5 and disassembly of adhesion machinery (He et al., 2018). The autophagy-independent function of TFEB was demonstrated in breast cancer, where TFEB inhibited apoptosis by regulating DNA repair mechanisms (Slade et al., 2020). More evidence supports a role for TFEB in the tumor microenvironment. In tumor-associated macrophages, TFEB acts as a major switch of both canonical and non-canonical pathways, leading to attenuation of the tumor-supporting phenotype. TFEB inhibits STAT3 activation, thus suppressing the production of an array of tumor-associated macrophage effector molecules and blocking the transcription of PPARγ, inhibiting the downstream expression of proinflammatory cytokines and HIF1α. Moreover, TFEB-induced increases in autophagic and lysosomal activity disactivate inflammasomes and degrade the HIF1α protein, thereby halting the hypoxic response associated with cancer progression (Li et al., 2020).
TFEB Regulates Vascular Functions
TFEB and Angiogenesis in Embryos and Adults
Mouse mutants have suggested that Tfeb functions as a modulator of endothelial activities related to angiogenesis in both embryos (Steingrímsson et al., 1998; Doronzo et al., 2019) and adult animals (Fan et al., 2018; Doronzo et al., 2019).
In wild-type mice, Tfeb is expressed at low levels in E8.5- to 10.5-day-old embryos, while it is highly expressed in labyrinthine trophoblasts from 8.5-day-old placentas. In Tfeb null mice, vascular invasion of the labyrinthine trophoblast layer by the embryo is blocked, and capillaries stop in the chorion. In contrast, maternal sinuses invade the placenta, although they are fewer and smaller than normal. Other defects of extraembryonic tissue are not evident. Interestingly, these placental vascular defects precede embryonic lethality, suggesting that the observed lethality is caused by placental defects, which are then instrumental in inducing hypoxia and cell necrosis (Steingrímsson et al., 1998). Mechanistically, Tfeb null mice express lower trophoblast levels of vascular endothelial growth factor (VEGF) A than wild-type mice, supporting that Tfeb directly or indirectly controls the expression of this angiogenic inducer (Steingrímsson et al., 1998).
The specific endothelial deletion of Tfeb is lethal at E10.5, with vascular alterations explained by defects in the remodeling of the primitive vascular plexus. Vessels appear irregular and dilated with reduced branching and impairment of invasion into intersomitic tissue. Furthermore, the yolk sac appears poorly vascularized and exhibits a hypoxic area (Doronzo et al., 2019). When Tfeb is deleted in all tissues (Steingrímsson et al., 1998), homozygous null mice die between E9.5 and E11.5 and exhibit characteristics of general and diffuse cell damage, particularly at somites, neural tubes, ganglia and mesenchyme.
Alterations in the VEGF pathway were further highlighted in conditional and endothelium-specific Tfeb knockout mice. In this model, endothelial Tfeb deletion after birth results in impairment of the maturation of retinal and renal vasculature because the EC cycle is blocked by the reduced expression of cyclin−dependent kinase (CDK) 4, which is under the direct transcriptional control of TFEB (Doronzo et al., 2019). As a consequence, the phosphorylation of the retinoblastoma protein is reduced, blocking the nuclear translocation of E2F to transcribe genes necessary for the S−phase of the cell cycle (Doronzo et al., 2019). Of note, the ability of TFEB to regulate the cell cycle independent of the autophagy pathway is not restricted to ECs, as it is observed in other cell types (Brady et al., 2018; Pastore et al., 2020; Pisonero-Vaquero et al., 2020). In an attempt to restore the cell cycle, ECs lacking TFEB overexpress VEGF receptor (R)2, but this process is ineffective in restoring cell proliferation. This cell response is not mediated by a direct effect of TFEB on VEGFR2 transcription because its promoter does not exhibit any specific binding site. In contrast, TFEB transactivates the intragenic miR-15a/16-1 cluster, which limits the stability of the VEGFR2 transcript (Chamorro-Jorganes et al., 2011; Chan et al., 2013). In the absence of this posttranscriptional regulatory mechanism, VEGFR2 mRNA is stabilized, thus promoting receptor accumulation (Doronzo et al., 2019). However, the signaling properties of VEGFR2 rely on not only the catalytic activity of the kinase domain but also its trafficking, which is instrumental for its performance (Simons et al., 2016). TFEB represses MYO1C, an unconventional myosin protein, which promotes VEGFR2 delivery to the plasma membrane (Tiwari et al., 2013). The regulated activity of VEGFR2 in ECs requires its internalization, trafficking to endosomes, and either transport to lysosomes for degradation or recycling back to the plasma membrane (Simons et al., 2016). In TFEB knockdown cells, the reduced and increased amounts of miR-15a/16-1 and MYO1C, respectively, result in the overexpression of VEGFR2 on the plasma membrane, which shows low signaling activity (Doronzo et al., 2019) that is most likely dependent on defects in receptor trafficking. Figure 3 summarizes the multiple effects induced by TFEB deletion in ECs.
Figure 3. Multiple effects of TFEB deletion on ECs. In vascular ECs, TFEB directly binds and regulate the promoters of: (A) DLEU2, which encodes miR-15a/16-1 cluster (A,B) MYO1C and (C) CDK4. Panel (A): in absence of TFEB the post-transcriptional regulation of VEGFR2 mediated by miR-15a-5p and miR-16-5p is impaired leading to an increased stabilization of the transcript. Panel (B): TFEB is a repressor of MYO1C, an unconventional myosin involved in VEGFR2 exocytosis. In absence of TFEB, the expression of this gene is increased and more VEGFR2 is available and transported to plasma membrane through Rab4 + exocytic vesicles. As a consequence the receptor recycling is impaired with a reduced efficiency of signaling machinery. Panel (C): TFEB transactivates CDK4 and the consequence of its deletion is the cell cycle in G1 phase.
In ECs, autophagic flux is controlled at the transcriptional level by NF-kB (Zeng et al., 2016; Leonard et al., 2019) and FOXO (Liu et al., 2015). It has also been recently reported that TFEB controls autophagy in ECs. This activity has been associated with the angiogenic response in ischemic skeletal muscle. Capillary ECs overexpressing TFEB respond to limb ischemia by promoting angiogenesis and improving tissue blood perfusion. In contrast, this proangiogenic activity is blunted in ECs devoid of TFEB. The angiogenic response is mediated by an increase in autophagic genes and activation of AMP-activated protein kinase signaling, as inferred by pharmacological inhibition or genetic silencing (Fan et al., 2018). The role of autophagy in angiogenesis represents a mechanism by which ECs can accommodate the metabolic changes required to support their migration and proliferation (Schaaf et al., 2019). Furthermore, autophagy represents a mechanism by which angiostatic signals are transferred from the extracellular matrix. For instance, the secreted proteoglycan decorin exerts antiangiogenic activity by activating autophagy in ECs (Torres et al., 2017), and this effect is mediated by TFEB. In this context, the nuclear translocation of TFEB relies on the catalytic activity of VEGFR2, as inferred by the use of tyrosine kinase inhibitors, which halt decorin-mediated TFEB activation (Neill et al., 2017).
TFEB Controls an Inflammatory Program in ECs
Recently, some studies have highlighted the anti-inflammatory role of TFEB in ECs (Lu et al., 2017; Song et al., 2019). Laminar shear stress, known to protect against atherosclerosis but not oscillatory shear stress, induces TFEB activation. ECs exposed to laminar flow express more TFEB than those exposed to static conditions by a mechanism mediated by Krüppel-like factor 2, which is a shear stress-responsive factor. TFEB overexpression results in a reduction in the synthesis of inflammatory cytokines and adhesive molecules and in the adhesiveness of circulating monocytes in response to an inflammatory stimulus. This phenotype is reverted by TFEB knockdown. These effects are independent of autophagic flux but rely on the suppressive activity of the NF-kB pathway. TFEB inhibits IκB kinase activity, leading to reduced p65 nuclear translocation (Song et al., 2019). Furthermore, the overexpression of TFEB in human ECs isolated from cord veins transactivates the antioxidant enzymes heme oxygenase-1 and superoxide dismutase 2 (Lu et al., 2017). In parallel, the overexpression of TFEB reduces the production of radical oxygen species, whereas TFEB knockdown has the opposite effect (Lu et al., 2017). A similar event was reported in cardiac endothelial cells subjected to ischemia/reperfusion both in vitro and in vivo (Zhang Y.J. et al., 2020). However, in this model, NAD+-dependent TFEB expression recovers the autophagic flux damaged by ischemic injury and prevents apoptosis. The antiapoptotic effect of TFEB was further investigated in vascular smooth muscle cell (VSMC)-selective Tfeb knockout mice and in human and mouse aortic aneurysm samples. TFEB binds the promoter of BCL2 in VSMCs, enhances its transcription and halts apoptosis. However, in this experimental setting, the antiapoptotic effect of TFEB was independent of autophagic flux because knockdown of the autophagic gene ATG7 did not abolish its antiapoptotic effect (Lu et al., 2020).
TFEB and the Atherosclerotic Process
Autophagy in both vascular ECs and VSMCs is a protective and prosurvival mechanism aimed at combating many pathophysiological stimuli, including oxidized low-density lipoproteins, reactive oxygen species, inflammatory stimuli, shear stress and hypoxia (De Meyer et al., 2015; Jiang, 2016). However, autophagy can exert a dangerous effect when the pathological stimulus burden is dominant (De Meyer et al., 2015; Jiang, 2016).
A paradigmatic example of this bimodal function in vascular pathology is atherosclerosis (Martinet and De Meyer, 2009; De Meyer et al., 2015). Autophagy is involved in promoting reverse cholesterol transport from macrophages infiltrating the vessel wall and protecting plaque cells from middle injuries, thereby favoring plaque stability (Ouimet et al., 2011). However, when oxidative stress and turbulent blood flow worsen, the autophagic response is insufficient to remove altered macromolecules and organelles (e.g., mitochondria). Damage to mitochondria and lysosome membranes results in the release of cytochrome c, mtDNA (Tumurkhuu et al., 2016) and acidic hydrolases (Wen and Weak, 2007) and in the subsequent activation of apoptosis, impairment of autophagosome formation and accumulation of insoluble ceroids constituted by proteins precipitated with oxidized lipids (Wen and Weak, 2007). The compromised autophagic flux in ECs and infiltrating macrophages results in the reduction of antithrombotic function of the vessel wall and in plaque instability.
In the atherosclerotic process, TFEB activation likely aims to revert the impairment of autophagic flux, as described in lysosomal storage diseases (Parenti et al., 2015). The potential role of TFEB in eliminating insoluble ceroids was demonstrated both in vitro and in vivo. Specifically, induction of lysosomal biogenesis by overexpression of TFEB in macrophages rescues ceroid-induced lysosome dysfunction, defers inflammasome activation, enhances cholesterol efflux, and reduces the in vivo progression of atherosclerotic disease in proatherogenic ApoE-null mice (Emanuel et al., 2014; Sergin et al., 2017). Interestingly, sorting nexin 10, a protein involved in regulating endosome trafficking, accumulates in atherosclerotic plaques and inhibits TFEB nuclear translocation by promoting AKT-dependent phosphorylation. Deletion of this protein in atherosclerotic macrophages suppresses the AKT pathway and increases the nuclear translocation of TFEB (You et al., 2020).
The inhibitory effect of TFEB on the atherosclerotic process was confirmed by findings obtained in VSMCs. In this cell type, oxidized lipoproteins inhibit the transcription of TFEB, which is counteracted by overexpression of stearoyl−coenzyme A desaturase−1, an integral protein anchored in the endoplasmic reticulum membrane. Overexpression of this enzyme inhibits the differentiation of VSMCs in foam cells and increases TFEB nuclear translocation (Pi et al., 2019). In mice maintained on a high-fat diet and subjected to partial carotid ligation, VSMCs undergo neointima formation, which is a hallmark of atherosclerotic plaques. The proliferation of VSMCs is dependent on the inhibition of TFEB-mediated autophagic flux and blocked by TFEB reactivation (Wang et al., 2019).
Conclusion and Perspectives
Current knowledge regarding the TFEB regulation of the vascular system is in its infancy, but the emerging results regarding its molecular and biological activities in other cellular types envisage its potential effects on many physiopathological conditions involving the vasculature, from cancer to inflammatory, metabolic and neurodegenerative diseases. However, to truly understand the budding role of TFEB in vascular medicine, several issues must be faced and solved. First, it is necessary to increase our knowledge of TFEB in vascular processes characterized by the activation of autophagy, such as pulmonary arterial hypertension, Fabry disease, pathological angiogenesis, atherosclerosis, chronic and acute ischemic disorders, and aneurysms. Because autophagy is associated with the endoplasmic reticulum stress response, which has an emerging role in vascular homeostasis (Battson et al., 2017), it might be relevant to understand how this stress response is regulated by TFEB in the vasculature. Interestingly, TFEB has been reported to transactivate the unfolded protein response and activate transcription factor 4 in retinal cells (Martina et al., 2016), which are key players in this pathway.
Second, TFEB is likely a hub of an undefined transcription factor network, which dynamically shapes the transcriptional landscape in a cellular context-dependent manner. To date, these transcriptional circuits have been poorly investigated (Astanina et al., 2020) and raise the question of whether other genetic programs are orchestrated or modulated by TFEB in addition to the well-established canonical autophagy process. Furthermore, elucidating the correlation between the level of TFEB activation in the vasculature and the type of transcriptional response is important to understand the extent to which TFEB will be a druggable target. A paradigmatic example is provided by hypoxia-inducible factor, which determines the features of gene expression according to the harshness of hypoxia (Pouysségur et al., 2006). Third, new findings on the effects of TFEB on key mechanisms of vascular homeostasis, such as endothelial metabolism, endothelial-mesenchymal transition, the cell cycle and cell motility, might open new translational opportunities.
Author Contributions
EA wrote the sections on the general aspect of TFEB biology. FB inspired the review and supervised the final version. GD wrote the sections related to the vascular functions of TFEB. All authors contributed to the article and approved the submitted version.
Funding
This work was supported by AIRC—Associazione Italiana Per la Ricerca sul Cancro (grant 22910), Regione Piemonte (grant A1907A, Deflect), Fondazione CRT, Ministero dell’Universita‘ e della Ricerca (PRIN 2017, grant 2017237P5X), FPRC 5xmille 2016 MIUR (Biofilm) and ERA-Net Transcan-2 (grant TRS-2018–00000689) to FB.
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
References
Annunziata, I., van de Vlekkert, D., Wolf, E., Finkelstein, D., Neale, G., Machado, E., et al. (2019). MYC competes with MiT/TFE in regulating lysosomal biogenesis and autophagy through an epigenetic rheostat. Nat. Commun. 10:3623. doi: 10.1038/s41467-019-11568-0
Argani, P., Laé, M., Hutchinson, B., Reuter, V. E., Collins, M. H., Perentesis, J., et al. (2005). Renal carcinomas with the t(6;11)(p21;q12): clinicopathologic features and demonstration of the specific alpha-TFEB gene fusion by immunohistochemistry, RT-PCR, and DNA PCR. Am. J. Surg. Pathol. 29, 230–240.
Artandi, S. E., Merrell, K., Avitahl, N., Wong, K. K., and Calame, K. (1995). TFE3 contains two activation domains, one acidic and the other proline-rich, that synergistically activate transcription. Nucleic Acids Res. 23, 3865–3871. doi: 10.1093/nar/23.19.3865
Astanina, E., Bussolino, F., and Doronzo, G. (2020). Multifaceted activities of transcription factor eb in cancer onset and progression. Mol. Oncol. 15, 327–346. doi: 10.1002/1878-0261.12867
Bao, J., Zheng, L., Zhang, Q., Li, X., Zhang, X., Li, Z., et al. (2016). Deacetylation of TFEB promotes fibrillar Aβ degradation by upregulating lysosomal biogenesis in microglia. Protein Cell 7, 417–433. doi: 10.1007/s13238-016-0269-2
Battson, M. L., Lee, D. M., and Gentile, C. L. (2017). Endoplasmic reticulum stress and the development of endothelial dysfunction. Am. J. Physiol. Heart Circ. Physiol. 312, H355–H367. doi: 10.1152/ajpheart.00437.2016
Berdeaux, R., and Hutchins, C. (2019). Anabolic and pro-metabolic functions of CREB-CRTC in skeletal muscle: advantages and obstacles for type 2 diabetes and cancer cachexia. Front. Endocrinol. 10:535. doi: 10.3389/fendo.2019.00535
Brady, O. A., Jeong, E., Martina, J. A., Pirooznia, M., Tunc, I., and Puertollano, R. (2018). The transcription factors TFE3 and TFEB amplify p53 dependent transcriptional programs in response to DNA damage. Elife 7:e40856. doi: 10.7554/eLife.40856
Byun, S., Seok, S., Kim, Y. C., Zhang, Y., Yau, P., Iwamori, N., et al. (2020). Fasting-induced FGF21 signaling activates hepatic autophagy and lipid degradation via JMJD3 histone demethylase. Nat. Commun. 11:807. doi: 10.1038/s41467-020-14384-z
Carr, C. S., and Sharp, P. A. (1990). A helix-loop-helix protein related to the immunoglobulin E box-binding proteins. Mol. Cell. Biol. 10, 4384–4388. doi: 10.1128/mcb.10.8.4384
Chamorro-Jorganes, A., Araldi, E., Penalva, L. O., Sandhu, D., Fernández-Hernando, C., and Suárez, Y. (2011). MicroRNA-16 and microRNA-424 regulate cell-autonomous angiogenic functions in endothelial cells via targeting vascular endothelial growth factor receptor-2 and fibroblast growth factor receptor-1. Arterioscler. Thromb. Vasc. Biol. 31, 2595–2606. doi: 10.1161/ATVBAHA.111.236521
Chan, L. S., Yue, P. Y., Wong, Y. Y., and Wong, R. N. (2013). MicroRNA-15b contributes to ginsenoside-Rg1-induced angiogenesis through increased expression of VEGFR-2. Biochem. Pharmacol. 86, 392–400. doi: 10.1016/j.bcp.2013.05.006
Choi, A. M., Ryter, S. W., and Levine, B. (2013). Autophagy in human health and disease. N. Engl. J. Med. 368, 1845–1846. doi: 10.1056/NEJMc1303158
Collodet, C., Foretz, M., Deak, M., Bultot, L., Metairon, S., Viollet, B., et al. (2019). AMPK promotes induction of the tumor suppressor FLCN through activation of TFEB independently of mTOR. FASEB J. 33, 12374–12391. doi: 10.1096/fj.201900841R
Davis, I. J., Hsi, B. L., Arroyo, J. D., Vargas, S. O., Yeh, Y. A., Motyckova, G., et al. (2010). Cloning of an Alpha-TFEB fusion in renal tumors harboring the t(6;11)(p21;q13) chromosome translocation. Proc. Natl. Acad. Sci. U.S.A. 100, 6051–6056. doi: 10.1073/pnas.0931430100
De Meyer, G. R., Grootaert, M. O., Michiels, C. F., Kurdi, A., Schrijvers, D. M., and Martinet, W. (2015). Autophagy in vascular disease. Circ. Res. 116, 468–479. doi: 10.1161/CIRCRESAHA.116.303804
De Val, S., and Black, B. L. (2009). Transcriptional control of endothelial cell development. Dev. Cell 16, 180–195. doi: 10.1016/j.devcel.2009.01.014
Di Malta, C., Siciliano, D., Calcagni, A., Monfregola, J., Punzi, S., Pastore, N., et al. (2017). Transcriptional activation of RagD GTPase controls mTORC1 and promotes cancer growth. Science 356, 1188–1192. doi: 10.1126/science.aag2553
Doronzo, G., Astanina, E., Corà, D., Chiabotto, G., Comunanza, V., Noghero, A., et al. (2019). TFEB controls vascular development by regulating the proliferation of endothelial cells. EMBO J. 38:e98250. doi: 10.15252/embj.201798250
Dubois, V., Eeckhoute, J., Lefebvre, P., and Staels, B. (2017). Distinct but complementary contributions of PPAR isotypes to energy homeostasis. J. Clin. Invest. 127, 1202–1214. doi: 10.1172/JCI88894
El-Houjeiri, L., Possik, E., Vijayaraghavan, T., Paquette, M., Martina, J. A., Kazan, J. M., et al. (2019). The transcription factors TFEB and TFE3 Link the FLCN-AMPK signaling axis to innate immune response and pathogen resistance. Cell Rep. 26, 3613–3628.e6. doi: 10.1016/j.celrep.2019.02.102
Emanuel, R., Sergin, I., Bhattacharya, S., Turner, J., Epelman, S., Settembre, C., et al. (2014). Induction of lysosomal biogenesis in atherosclerotic macrophages can rescue lipid-induced lysosomal dysfunction and downstream sequelae. Arterioscler. Thromb. Vasc. Biol. 34, 1942–1952. doi: 10.1161/ATVBAHA.114.303342
Fan, Y., Lu, H., Liang, W., Garcia-Barrio, M. T., Guo, Y., Zhang, J., et al. (2018). Endothelial TFEB (Transcription Factor EB) positively regulates postischemic angiogenesis. Circ. Res. 122, 945–957. doi: 10.1161/CIRCRESAHA.118.312672
Ferron, M., Settembre, C., Shimazu, J., Lacombe, J., Kato, S., Rawlings, D. J., et al. (2013). A RANKL-PKCβ-TFEB signaling cascade is necessary for lysosomal biogenesis in osteoclasts. Genes Dev. 27, 955–969. doi: 10.1101/gad.213827.113
Fisher, D. E., Carr, C. S., Parent, L. A., and Sharp, P. A. (1991). TFEB has DNA-binding and oligomerization properties of a unique helix-loop-helix/leucine-zipper family. Genes Dev. 5, 2342–2352. doi: 10.1101/gad.5.12a.2342
Giatromanolaki, A., Kalamida, D., Sivridis, E., Karagounis, I. V., Gatter, K. C., Harris, A. L., et al. (2015). Increased expression of transcription factor EB (TFEB) is associated with autophagy, migratory phenotype and poor prognosis in non-small cell lung cancer. Lung Cancer 90, 98–105. doi: 10.1016/j.lungcan.2015.07.008
Hallsson, J. H., Haflidadóttir, B. S., Stivers, C., Odenwald, W., Arnheiter, H., Pignoni, F., et al. (2004). The basic helix-loop-helix leucine zipper transcription factor Mitf is conserved in Drosophila and functions in eye development. Genetics 167, 233–241. doi: 10.1534/genetics.167.1.233
He, R., Wang, M., Zhao, C., Shen, M., Yu, Y., He, L., et al. (2018). TFEB-driven autophagy potentiates TGF-β induced migration in pancreatic cancer cells. J. Exp. Clin. Cancer Res. 38:340. doi: 10.1186/s13046-019-1343-4
Hsu, C. L., Lee, E. X., Gordon, K. L., Paz, E. A., Shen, W. C., Ohnishi, K., et al. (2018). MAP4K3 mediates amino acid-dependent regulation of autophagy via phosphorylation of TFEB. Nat. Commun. 9:942. doi: 10.1038/s41467-018-03340-7
Irazoqui, J. E. (2020). Key roles of MiT transcription factors in innate immunity and inflammation. Trends Immunol. 41, 157–171. doi: 10.1016/j.it.2019.12.003
Jiang, F. (2016). Autophagy in vascular endothelial cells. Clin. Exp. Pharmacol. Physiol. 43, 1021–1028. doi: 10.1111/1440-1681.12649
Kuiper, R. P., Schepens, M., Thijssen, J., Schoenmakers, E. F., and van Kessel, A. G. (2004). Regulation of the MiTF/TFE bHLH-LZ transcription factors through restricted spatial expression and alternative splicing of functional domains. Nucleic Acids Res. 32, 2315–2322. doi: 10.1093/nar/gkh571
Lapierre, L. R., De Magalhaes Filho, C. D., McQuary, P. R., Chu, C. C., Visvikis, O., Chang, J. T., et al. (2013). The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans. Nat. Commun. 4:2267. doi: 10.1038/ncomms3267
Leonard, A., Millar, M. W., Slavin, S. A., Bijli, K. M., Dionisio Santos, D. A., Dean, D. A., et al. (2019). Critical role of autophagy regulator Beclin1 in endothelial cell inflammation and barrier disruption. Cell. Signal. 61, 120–129. doi: 10.1016/j.cellsig.2019.04.013
Li, L., Friedrichsen, H. J., Andrews, S., Picaud, S., Volpon, L., Ngeow, K., et al. (2018). A TFEB nuclear export signal integrates amino acid supply and glucose availability. Nat. Commun. 9:2685. doi: 10.1038/s41467-018-04849-7
Li, S., Song, Y., Quach, C., Guo, H., Jang, G. B., Maazi, H., et al. (2019). Transcriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and chemoresistance. Nat. Commun. 10:1693. doi: 10.1038/s41467-019-09634-8
Li, Y., Hodge, J., Liu, Q., Wang, J., Wang, Y., Evans, T. D., et al. (2020). TFEB is a master regulator of tumor-associated macrophages in breast cancer. J. Immunother. Cancer 8:e000543. doi: 10.1136/jitc-2020-000543
Li, Y., Xu, M., Ding, X., Yan, C., Song, Z., Chen, L., et al. (2016). Protein kinase C controls lysosome biogenesis independently of mTORC1. Nat. Cell Biol. 18, 1065–1077. doi: 10.1038/ncb3407
Liang, J., Jia, X., Wang, K., and Zhao, N. (2010). High expression of TFEB is associated with aggressive clinical features in colorectal cancer. Onco Targets Ther. 11, 8089–8098. doi: 10.2147/OTT.S180112
Lister, J. A., Lane, B. M., Nguyen, A., and Lunney, K. (2011). Embryonic expression of zebrafish MiT family genes tfe3b, tfeb, and tfec. Dev. Dyn. 240, 2529–2538. doi: 10.1002/dvdy.22743
Liu, J., Bi, X., Chen, T., Zhang, Q., Wang, S. X., Chiu, J. J., et al. (2015). Shear stress regulates endothelial cell autophagy via redox regulation and Sirt1 expression. Cell Death Dis. 6:e1827. doi: 10.1038/cddis.2015.193
Lu, H., Fan, Y., Qiao, C., Liang, W., Hu, W., Zhu, T., et al. (2017). TFEB inhibits endothelial cell inflammation and reduces atherosclerosis. Sci. Signal. 10:eaah4214. doi: 10.1126/scisignal.aah4214
Lu, H., Sun, J., Liang, W., Chang, Z., Rom, O., Zhao, Y., et al. (2020). Cyclodextrin prevents abdominal aortic aneurysm via activation of vascular smooth muscle cell transcription factor EB. Circulation 142, 483–498. doi: 10.1161/CIRCULATIONAHA.119.044803
Ma, S., Fang, Z., Luo, W., Yang, Y., Wang, C., Zhang, Q., et al. (2016). The C-ETS2-TFEB axis promotes neuron survival under oxidative stress by regulating lysosome activity. Oxid. Med. Cell. Longev. 2016:4693703. doi: 10.1155/2016/4693703
Mantovani, A., Bussolino, F., and Introna, M. (1997). Cytokine regulation of endothelial cell function: from molecular level to the bedside. Immunol. Today 18, 231–240.
Martina, J. A., Chen, Y., Gucek, M., and Puertollano, R. (2012). MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB. Autophagy 8, 903–914. doi: 10.4161/auto.19653
Martina, J. A., Diab, H. I., Brady, O. A., and Puertollano, R. (2016). TFEB and TFE3 are novel components of the integrated stress response. EMBO J. 35, 479–495. doi: 10.15252/embj.201593428
Martina, J. A., and Puertollano, R. (2013). Rag GTPases mediate amino acid-dependent recruitment of TFEB and MITF to lysosomes. J. Cell Biol. 200, 475–491. doi: 10.1083/jcb.201209135
Martina, J. A., and Puertollano, R. (2018). Protein phosphatase 2A stimulates activation of TFEB and TFE3 transcription factors in response to oxidative stress. J. Biol. Chem. 293, 12525–12534. doi: 10.1074/jbc.RA118.003471
Martinet, W., and De Meyer, G. R. (2009). Autophagy in atherosclerosis: a cell survival and death phenomenon with therapeutic potential. Circ. Res. 104, 304–317. doi: 10.1161/CIRCRESAHA.108.188318
Medina, D. L., Paola, S. Di, Peluso, I., Armani, A., De Stefani, D., Venditti, R., et al. (2015). Lysosomal calcium signalling regulates autophagy through calcineurin and TFEB. Nat. Cell Biol. 17, 288–299. doi: 10.1038/ncb3114
Miller, A. J., Levy, C. I, Davis, J., Razin, E., and Fisher, D. E. (2005). Sumoylation of MITF and its related family members TFE3 and TFEB. J. Biol. Chem. 280, 146–155. doi: 10.1074/jbc.M411757200
Muhle-Goll, C., Gibson, T., Schuck, P., Schubert, D., Nalis, D., Nilges, M., et al. (1994). The dimerization stability of the HLH-LZ transcription protein family is modulated by the leucine zippers: a CD and NMR study of TFEB and c-Myc. Biochemistry 33, 11296–11306. doi: 10.1021/bi00203a027
Napolitano, G., and Ballabio, A. (2016). TFEB at a glance. J. Cell Sci. 129, 2475–2481. doi: 10.1242/jcs.146365
Napolitano, G., Esposito, A., Choi, H., Matarese, M., Benedetti, V., Di Malta, C., et al. (2018). mTOR-dependent phosphorylation controls TFEB nuclear export. Nat. Commun. 9:3312. doi: 10.1038/s41467-018-05862-6
Napolitano, G., Malta, C. Di, Esposito, A., de Arauju, M. E. G., Pece, S., Bertalot, G., et al. (2020). A substrate-specific mTORC1 pathway underlies Birt-Hogg-Dubé syndrome. Nature 585, 597–602. doi: 10.1038/s41586-020-2444-0
Neill, T., Sharpe, C., Owens, R. T., and Iozzo, R. V. (2017). Decorin-evoked paternally expressed gene 3 (PEG3) is an upstream regulator of the transcription factor EB (TFEB) in endothelial cell autophagy. J. Biol. Chem. 292, 16211–16220. doi: 10.1074/jbc.M116.769950
Ouimet, M., Franklin, V., Mak, E., Liao, X., Tabas, I., and Marcel, Y. (2011). Autophagy regulates cholesterol efflux from macrophage foam cells via lysosomal acid lipase. Cell Metab. 13, 655–667.
Palmieri, M., Impey, S., Kang, H., di Ronza, A., Pelz, C., Sardiello, M., et al. (2011). Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways. Hum. Mol. Genet. 20, 3852–3866. doi: 10.1093/hmg/ddr306
Palmieri, M., Pal, R., Nelvagal, H. R., Lotfi, P., Stinnett, G. R., Seymour, M. L., et al. (2017). mTORC1-independent TFEB activation via Akt inhibition promotes cellular clearance in neurodegenerative storage diseases. Nat. Commun. 8:14338. doi: 10.1038/ncomms14338
Parenti, G., Andria, G., and Ballabio, A. (2015). Lysosomal storage diseases: from pathophysiology to therapy. Annu. Rev. Med. 66, 471–486. doi: 10.1146/annurev-med-122313-085916
Park, C., Kim, T. M., and Malik, A. B. (2013). Transcriptional regulation of endothelial cell and vascular development. Circ. Res. 112, 1380–1400. doi: 10.1161/CIRCRESAHA.113.301078
Pastore, N., Huynh, T., Herz, N. J., Calcagni’, A., Klisch, T. J., Brunetti, L., et al. (2020). TFEB regulates murine liver cell fate during development and regeneration. Nat. Commun. 11:2461. doi: 10.1038/s41467-020-16300-x
Peña-Llopis, S., Vega-Rubin-de-Celis, S., Schwartz, J. C., Wolff, N. C., Tran, T. A., Zou, L., et al. (2011). Regulation of TFEB and V-ATPases by mTORC1. EMBO J. 30, 3242–3258. doi: 10.1038/emboj.2011.257
Peng, Z., Shu, B., Zhang, Y., and Wang, M. (2019). Endothelial response to pathophysiological stress. Arterioscler. Thromb. Vasc. Biol. 39, e233–e243. doi: 10.1161/ATVBAHA.119.312580
Perera, R. M., Stoykova, S., Nicolay, B. N., Ross, K. N., Fitamant, J., Boukhali, M., et al. (2015). Transcriptional control of autophagy-lysosome function drives pancreatic cancer metabolism. Nature 524, 361–365. doi: 10.1038/nature14587
Petit, C. S., Roczniak-Ferguson, A., and Ferguson, S. M. (2013). Recruitment of folliculin to lysosomes supports the amino acid-dependent activation of Rag GTPases. J. Cell Biol. 202, 1107–1122. doi: 10.1083/jcb.201307084
Pi, H., Wang, Z., Liu, M., Deng, P., Yu, Z., Zhou, Z., et al. (2019). SCD1 activation impedes foam cell formation by inducing lipophagy in oxLDL-treated human vascular smooth muscle cells. J. Cell. Mol. Med. 23, 5259–5269. doi: 10.1111/jcmm.14401
Pisonero-Vaquero, S., Soldati, C., Cesana, M., Ballabio, A., and Medina, D. L. (2020). TFEB modulates p21/WAF1/CIP1 during the DNA damage response. Cells 9:1186. doi: 10.3390/cells9051186
Pouysségur, J., Dayan, F., and Mazure, N. M. (2006). Hypoxia signalling in cancer and approaches to enforce tumour regression. Nature 441, 437–443. doi: 10.1038/nature04871
Roczniak-Ferguson, A., Petit, C. S., Froehlich, F., Qian, S., Ky, J., Angarola, B., et al. (2012). The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis. Sci. Signal. 5:ra42. doi: 10.1126/scisignal.2002790
Saftig, P., and Puertollano, R. (2020). How lysosomes sense, integrate, and cope with stress. Trends Biochem. Sci. 46, 97–112. doi: 10.1016/j.tibs.2020.09.004
Salma, N., Song, J. S., Kawakami, A., Devi, S. P., Khaled, M., Cacicedo, J. M., et al. (2017). Tfe3 and Tfeb transcriptionally regulate peroxisome proliferator-activated receptor γ2 expression in adipocytes and mediate adiponectin and glucose levels in mice. Mol. Cell. Biol. 37, e608–e616. doi: 10.1128/MCB.00608-16
Sardiello, M., Palmieri, M., di Ronza, A., Medina, D. L., Valenza, M., Gennarino, V. A., et al. (2009). A gene network regulating lysosomal biogenesis and function. Science 325, 473–477. doi: 10.1126/science.1174447
Saxton, R. A., and Sabatini, D. M. (2017). mTOR signaling in growth, metabolism, and disease. Cell 168, 960–976. doi: 10.1016/j.cell.2017.02.004
Schaaf, M. B., Houbaert, D., Meçe, O., and Agostinis, P. (2019). Autophagy in endothelial cells and tumor angiogenesis. Cell Death Differ. 26, 665–779. doi: 10.1038/s41418-019-0287-8
Seok, S., Fu, T., Choi, S. E., Li, Y., Zhu, R., Kumar, S., et al. (2014). Transcriptional regulation of autophagy by an FXR-CREB axis. Nature 516, 108–111. doi: 10.1038/nature13949
Sergin, I., Evans, T., Zhang, X., Bhattacharya, S., Stokes, C., Song, E., et al. (2017). Exploiting macrophage autophagy-lysosomal biogenesis as a therapy for atherosclerosis. Nat. Commun. 8:15750.
Settembre, C., Di Malta, C., Polito, V. A., Garcia Arencibia, M., Vetrini, F., Erdin, S., et al. (2011). TFEB links autophagy to lysosomal biogenesis. Science 332, 1429–1433. doi: 10.1126/science.1204592
Settembre, C., Zoncu, R., Medina, D. L., Vetrini, F., Erdin, S., Huynh, T., et al. (2012). A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB. EMBO J. 31, 1095–1108. doi: 10.1038/emboj.2012.32
Sha, Y., Rao, L., Settembre, C., Ballabio, A., and Eissa, N. T. (2017). STUB1 regulates TFEB-induced autophagy-lysosome pathway. EMBO J. 36, 2544–2552. doi: 10.15252/embj.201796699
Shang, D., Wang, L., Klionsky, D. J., Cheng, H., and Zhou, R. (2020). Sex differences in autophagy-mediated diseases: toward precision medicine. Autophagy 17, 1–12. doi: 10.1080/15548627.2020.1752511
Simons, M., Gordon, E., and Claesson-Welsh, L. (2016). Mechanisms and regulation of endothelial VEGF receptor signalling. Nat. Rev. Mol. Cell Biol. 17, 611–625. doi: 10.1038/nrm.2016.8
Slade, L., Biswas, D., Ihionu, F., El Hiani, Y., Kienesberger, P. C., and Pulinilkunnil, T. (2020). A lysosome independent role for TFEB in activating DNA repair and inhibiting apoptosis in breast cancer cells. Biochem. J. 477, 137–160. doi: 10.1042/BCJ20190596
Song, W., Zhang, C. L., Gou, L., He, L., Gong, Y. Y., Qu, D., et al. (2019). Endothelial TFEB (Transcription Factor EB) Restrains IKK (IκB Kinase)-p65 pathway to attenuate vascular inflammation in diabetic db/db mice. Arterioscler. Thromb. Vasc. Biol. 39, 719–730. doi: 10.1161/ATVBAHA.119.312316
Steingrímsson, E., Copeland, N. G., and Jenkins, N. A. (2004). Melanocytes and the microphthalmia transcription factor network. Annu. Rev. Genet. 38, 365–411. doi: 10.1146/annurev.genet.38.072902.092717
Steingrímsson, E., Tessarollo, L., Reid, S. W., Jenkins, N. A., and Copeland, N. G. (1998). The bHLH-Zip transcription factor Tfeb is essential for placental vascularization. Development 125, 4607–4616.
Stine, Z. E., Walton, Z. E., Altman, B. J., Hsieh, A. L., and Dang, C. V. (2015). MYC, metabolism, and cancer. Cancer Discov. 5, 1024–1039. doi: 10.1158/2159-8290.CD-15-05
Tiwari, A., Jung, J. J., Inamdar, S. M., Nihalani, D., and Choudhury, A. (2013). The myosin motor Myo1c is required for VEGFR2 delivery to the cell surface and for angiogenic signaling. Am. J. Physiol. Heart Circ. Physiol. 304, H687–H696. doi: 10.1152/ajpheart.00744.2012
Torres, A., Gubbiotti, M. A., and Iozzo, R. V. (2017). Decorin-inducible Peg3 evokes beclin 1-mediated autophagy and thrombospondin 1-mediated angiostasis. J. Biol. Chem. 292, 5055–5069. doi: 10.1074/jbc.M116.753632
Tumurkhuu, G., Shimada, K., Dagvadorj, J., Crother, T., Zhang, W., Luthringer, D., et al. (2016). Ogg1 -dependent DNA repair regulates NLRP3 inflammasome and prevents atherosclerosis. Circ. Res. 119, e76–e90.
Vanlandewijck, M., He, L., Mäe, M. A., Andrae, J., Ando, K., Del Gaudio, F., et al. (2018). A molecular atlas of cell types and zonation in the brain vasculature. Nature 554, 475–480. doi: 10.1038/nature25739
Vega-Rubin-de-Celis, S., Peña-Llopis, S., Konda, M., and Brugarolas, J. (2017). Multistep regulation of TFEB by MTORC1. Autophagy 13, 464–472. doi: 10.1080/1554
Vu, H. N., Dilshat, R., Fock, V., and Steingrímsson, E. (2021). User guide to MiT-TFE isoforms and post-translational modifications. Pigment Cell Melanoma Res. 34, 13–27. doi: 10.1111/pcmr.12922
Wang, Y., Huang, Y., Liu, J., Zhang, J., Xu, M., You, Z., et al. (2020). Acetyltransferase GCN5 regulates autophagy and lysosome biogenesis by targeting TFEB. EMBO Rep. 21:e48335. doi: 10.15252/embr.201948335
Wang, Y. T., Li, X., Chen, J., McConnell, B. K., Chen, L., Li, P. L., et al. (2019). Activation of TFEB ameliorates dedifferentiation of arterial smooth muscle cells and neointima formation in mice with high-fat diet. Cell Death Dis. 10:676. doi: 10.1038/s41419-019-1931-4
Wen, Y., and Weak, D. (2007). Low density lipoprotein undergoes oxidation within lysosomes in cells. Circ. Res. 100, 1337–1343.
Yin, Q., Jian, Y., Xu, M., Huang, X., Wang, N., Liu, Z., et al. (2020). CDK4/6 regulate lysosome biogenesis through TFEB/TFE3. J. Cell Biol. 219:e201911036. doi: 10.1083/jcb.201911036
You, Y., Bao, W., Zhang, S., Li, H., Li, H., Dang, W., et al. (2020). Sorting Nexin 10 mediates metabolic reprogramming of macrophages in atherosclerosis through the Lyn-dependent TFEB signaling pathway. Circ. Res. 127, 534–549.
Yu, S., Wang, Z., Ding, L., and Yang, L. (2020). The regulation of TFEB in lipid homeostasis of non-alcoholic fatty liver disease: molecular mechanism and promising therapeutic targets. Life Sci. 246:117418. doi: 10.1016/j.lfs.2020.117418
Zeng, M., Wei, X., Wu, Z., Li, W., Zheng, Y., Li, B., et al. (2016). Simulated ischemia/reperfusion-induced p65-Beclin 1-dependent autophagic cell death in human umbilical vein endothelial cells. Sci. Rep. 6:37448. doi: 10.1038/srep37448
Zhang, J., Wang, J., Zhou, Z., Park, J. E., Wang, L., Wu, S., et al. (2018). Importance of TFEB acetylation in control of its transcriptional activity and lysosomal function in response to histone deacetylase inhibitors. Autophagy 14, 1043–1059. doi: 10.1080/15548627.2018.1447290
Zhang, Y. J., Zhang, M., Zhao, X., Shi, K., Ye, M., Tian, J., et al. (2020). NAD+ administration decreases microvascular damage following cardiac ischemia/reperfusion by restoringautophagic fux. Basic Res. Cardiol. 115:57. doi: 10.1007/s00395-020-0817-z
Keywords: angiogenesis, embryo, cell cycle, autophagy, inflammation
Citation: Doronzo G, Astanina E and Bussolino F (2021) The Oncogene Transcription Factor EB Regulates Vascular Functions. Front. Physiol. 12:640061. doi: 10.3389/fphys.2021.640061
Received: 10 December 2020; Accepted: 17 March 2021;
Published: 12 April 2021.
Edited by:
Luca Munaron, University of Turin, ItalyReviewed by:
Serena Zacchigna, International Centre for Genetic Engineering and Biotechnology, ItalyIlaria Cascone, Université Paris-Est Créteil Val de Marne, France
Lena Claesson-Welsh, Uppsala University, Sweden
Copyright © 2021 Doronzo, Astanina and Bussolino. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Federico Bussolino, RmVkZXJpY28uYnVzc29saW5vQHVuaXRvLml0