- Zhejiang Province Key Laboratory of Anti-cancer Drug Research, Institute of Pharmacology and Toxicology, College of Pharmaceutical sciences, Zhejiang University, Hangzhou, China
Dysfunction or dysregulation of the ubiquitin proteasome system (UPS) is closely related to tumorigenesis and the development of multiple cancers. Targeting the UPS provides a new anticancer therapeutic strategy, but clinically available UPS-targeted inhibitors, including lenalidomide and bortezomib, are limited to treat solid tumors. Under physiological conditions, deubiquitinases or deubiquitinating enzymes (DUBs) play vital roles in the UPS by removing ubiquitin from substrate proteins and regulating their proteasomal degradation and sub-localization, thus maintaining the balance between ubiquitination and deubiquitination for protein quality control and homeostasis. The aberrant expression or function of DUBs generally leads to the occurrence and progression of a series of disorders, including malignant tumors. Therefore, targeting DUBs is a novel anticancer therapeutic strategy. Ubiquitin-specific proteases (USPs) are the largest subfamily of DUBs which have attracted considerable interest as anticancer targets. Most of USPs are abnormally activated or expressed in a variety of malignant tumors or in the tumor microenvironment, making them ideal anticancer target candidates, which indicates that USPs inhibitors may be a class of potential anticancer therapeutic agents. However, there are no relevant inhibitors targeting USPs have entered clinical trial so far. In this review, we will summarize the roles and mechanisms of USPs in malignant transformation and progression as well as recent advances of small-molecule inhibitors targeting USPs.
Introduction
Ubiquitin Proteasome System
The ubiquitin proteasome system (UPS) is the primary system responsible for the degradation of substrates and the regulation of fundamental cellular processes in eukaryotic cells, such as transcriptional activation, stress response, DNA repair, signal transduction, etc. (D'Arcy et al., 2015; Pfoh et al., 2015). UPS consists of a tagging molecule–ubiquitin and a multi-subunit proteolytic complex–the 26S proteasome. Ubiquitin selectively labels the misfolded or unwanted proteins to be degraded and the 26S proteasome functions as a molecular shredder that breaks down these substrate proteins into small molecular peptides for using in other biological processes (D'Arcy et al., 2015; Selvaraju et al., 2015).
Ubiquitin, a small and highly conserved small molecular protein (76 amino acid), is covalently attached to substrates using an isopeptide bond between the terminal Gly-residue of ubiquitin and the 3-amino group of a Lys-residue on the target protein. Ubiquitin contains seven Lys-residues, including Lys6, Lys11, Lys27, Lys29, Lys33, Lys48, and Lys63, all of which can covalently attach to other ubiquitin molecules. The formation of polyubiquitin chains through linkage ultimately determines the destiny of the bound substrates. Generally, proteins labeled with Lys48-linked poly-ubiquitin chains are bound for degradation, whereas proteins tagged with Lys63-linked chains are more typically associated with non-proteasomal roles, including DNA replication, signal transduction and DNA repair, of course, Lys63-ubiquitination can also lead to the substrates to be degraded via autophagy-lysome pathway (ALP) (McKeon et al., 2015). Aside from these instances, other linkage types of polyubiquitin chains are less well-characterized.
The 26S proteasome, an ATP-dependent multi-subunit proteolytic structure, which is located in the nucleus and in the cytoplasm of eukaryotic cells, functions as the molecular shredder for UPS. Based on the diversity of functions, the 26S proteasome can be divided into two discrete sub-structures: a catalytic 20S core particle, which contains the necessary protease active sites, and two19S regulatory particles, which function as a selective and effective facilitator for transfer to the 20S core particle (Selvaraju et al., 2015).
The ubiquitination process is a multi-step cascade reaction that is catalyzed by at least three components—activation, conjugation, and ligation. This process depends on the continuous activity of three discrepant catalyzing enzymes, E1 activating enzymes, E2 conjugating enzymes and E3 ubiquitin ligases. The E1 activating enzymes catalyze the ATP-dependent activation of ubiquitin and form the thioester bond between a Cys-residue in the active site of the E1 activating enzymes and the C-terminus of ubiquitin. Then the activated ubiquitin is transferred to the E2 conjugating enzyme, which forms a thioester bond between a Cys-residue in the active site of the E2 ubiquitin-conjugating enzyme and the C-terminus of ubiquitin. The E3 ubiquitin ligases subsequently recognize and catalyze the ubiquitination of the target protein, ultimately transferring these substrates to the 26S proteasome (Figure 1). In human cells, ~700 E3 ubiquitin ligases guarantee the specificity of substrates selection, indicating that E3 ubiquitin ligases determine the specificity and type of ubiquitination identified for the substrates (Komander et al., 2009; Skaar et al., 2014).
Figure 1. The ubiquitination, degradation and deubiquitination process of protein substrates Ubiquitin is activated by E1 activating enzymes and then, in turn, transferred to E2 conjugating enzymes and E3 ubiquitin ligases. E3 ubiquitin ligases specifically recognize and catalyze the substrate, ultimately leading to the degradation of substrates through the proteasome or stabilization of target proteins through relevant DUBs.
Deubiquitinases (Deubiquitinating Enzymes)
The process of ubiquitination is highly reversible and subject to dynamic post-translational modifications that are involved in regulating multiple cellular pathways. Deubiquitinases or deubiquitinating enzymes (DUBs) can reverse the effect of E3 ligases by removing ubiquitin from target proteins and are also involved in ubiquitin maturation, recycling and editing (Pfoh et al., 2015; Singh and Singh, 2016; Harrigan et al., 2018). The human genome encodes ~100 DUBs. Based on the mechanism of enzymatic cleavage, DUBs can be divided into two main classes: cysteine proteases and zinc metalloproteases. Based on sequence and domain conservation, DUBs can also be divided into six subfamilies: ubiquitin-specific proteases (USPs), ovarian-tumor proteases (OTUs), Machado–Joseph disease protein domain proteases (MJDs), ubiquitin carboxy-terminal hydrolases (UCHs), monocyte chemotactic protein-induced protein (MCPIP) and JAMM/MPN domain-associated metallopeptidases (JAMMs) (D'Arcy et al., 2015; Pfoh et al., 2015; Kemp, 2016; Harrigan et al., 2018). Among these DUBs, USPs are the most numerous classes with ~60 proteases in humans, with sizes ranging from 50 to 300 kDa (Pfoh et al., 2015). USPs includes an enormous subset of proteins with relevant DUB activity. Their substrates and the regulatory mechanisms, biological functions, and particularly the roles of they play in a variety of clinical diseases, has become increasingly appreciated. The overall evaluation of gene mutations and aberrant expression of USPs in various cancers makes USPs as potential anticancer targets, and there is increasing interest in developing USP-specific inhibitors as candidates for anticancer therapeutic agents (Anupama and Nicholas, 2014). Therefore, we will emphasize the roles and mechanisms of USPs in tumorigenesis and development of multiple cancers, as well as the potentiality and feasibility of USPs inhibition as a novel cancer therapeutic strategy.
The Structure of USPs
Emerging evidence has indicated that most members of the USPs subfamily play significant roles in the progression of various types of cancer (Anupama and Nicholas, 2014). The deubiquitinase activity of USPs is closely associated with their structural features. Thus, it is crucial to understand the structure of USPs.
David Komander et al. (Komander et al., 2009) analyzed the domain architectures of USPs and uncovered numerous predicted ubiquitin-binding domains (UBDs) in USPs, including the ubiquitin-associated domain (UBA domain), the ubiquitin-interacting motif (UIM) and the zinc finger ubiquitin-specific protease domain (ZnF-UBP domain). USP domains are composed of three regions, which have been compared to the fingers, thumb and palm of a hand (Komander et al., 2009; Kemp, 2016). Like most of USP domain-containing DUBs, the 26S proteasome-related USP14 also includes a finger subunit that is contact with more than forty percent of the distal ubiquitin and interdicts approach of Lys48 or Lys63. This characteristic allows USP14 to bind to the terminal region of an ubiquitin chain instead of linking to the internal region of the chain. USP14 is specific to Lys-48-linked ubiquitin chains (Hu et al., 2005; Komander et al., 2009). The catalytic center of USPs is located in the interface between the palm and thumb regions, and the fingers grasp the specific position of the ubiquitin chain: as in an ubiquitin dimer, it refers to the conjugated-ubiquitin molecule through the C-terminal Gly-subunit. However, some apo-USP domains, those which cannot bind to the target protein, have a non-productive catalytic structure. When bound to the ubiquitin, the apo-USP domains undergo conformational changes. The changes can be regarded as the result of a dynamic equilibrium between inactive and active conformations, which shifts toward the active conformation. USP7 (HAUSP; Figure 2) is the best example of ubiquitin binding in which the catalytic Cys-residue need to be in range of the His-residue. However, the catalytic triads of USP8 and USP14 are correctly aligned for catalysis in the absence of ubiquitin, and the active site is protected by ubiquitin-binding surface loops (Komander et al., 2009).
Figure 2. The structure of USP7 (Protein Data Bank (PDB) identifier 1NBF).The fingers, thumb, and palm regions of the USP domain are indicated.
The Roles of USPs in Cancer
USP1 is a key protein involved in several significant steps in the process of DNA damage response, including regulating the Fanconi anemia pathway (Nijman et al., 2005; Iraia et al., 2013; D'Arcy et al., 2015), the process of translesion synthesis (Huang et al., 2006; Iraia et al., 2013; Villamil et al., 2013), and the process of differentiation in specific cellular contexts (Williams et al., 2011; Villamil et al., 2013). The Fanconi anemia pathway can prevent the repair of DNA interstrand crosslinks and predisposes patients to diseases, including cancer. Dysfunction of the Fanconi anemia pathway can cause multiple abnormalities that lead to cancer, which are correlated with deregulation of USP1. Translesion synthesis is a process associated with DNA damage tolerance, which permits DNA replication to occur in region of a variety of types of DNA damage caused by exogenous or endogenous factors (Villamil et al., 2013). However, the activation of USP1 requires USP1 cofactor, called USP1-associated factor 1(UAF1; D'Arcy et al., 2015; Kemp, 2016). Studies show that the formation of the USP1/UAF1 complex greatly enhances the catalytic activity of USP1, but USP1 alone has a very low level of activity (Cohn et al., 2007; Villamil et al., 2012). Based on an investigation of tumor microarray expression data in the Oncomine Research Edition Database, the level of USP1 mRNA expression is markedly changed in several malignant tumors, including sarcoma, melanoma, gastric cancer, etc. and USP1 is aberrantly over-expressed in gastric or cervical cancer and in melanoma and sarcoma, as well as in osteosarcoma (Iraia et al., 2013). In view of the frequent over-expression of USP1 in various tumors and the important roles of USP1 in DNA damage response, USP1 inhibition may be a novel anticancer therapy.
USP2 and its isoforms are involved in the development of several types of cancer. USP2 regulates cell growth or death and involves in the pathogenesis of various diseases, including malignant tumors (Zhu and Gao, 2017). It has been reported that USP2 can regulate and stabilize fatty acid synthase, an aberrantly over-expressed protein in biologically-aggressive prostate cancer cells (Sacco et al., 2010). Deubiquitinating enzyme, USP2a, an isoform of USP2, has been shown to have oncogenic properties in a variety of cancers through regulation of its substrate proteins, including MDM2, MDMX, FASN as well as Aurora A, and USP2a is abnormally over-expressed in multiple cancers, particularly in prostate cancer (Kim et al., 2012). USP2a is known to deubiquitinate and stabilize MDM2 and MDMX, and unlike USP7/HAUSP, USP2a does not interact with p53; over-expression of USP2a was shown to increase the level of MDM2/MDMX protein and to reduce p53 stability (Sacco et al., 2010; D'Arcy et al., 2015). Further studies (Kim et al., 2012; D'Arcy et al., 2015) show that USP2a targets and deubiquitinates cyclin A1, a key cell cycle regulator, leading to the blocking of degradation of cyclin A1 and the accumulation of cyclin A1 as well as the enhancement of cell proliferation. There is evidence that USP2a functions as an oncogene in bladder cancer, the aberrant expression of USP2a results in an increase in proliferation, migration, invasion and resistance to multiple chemotherapeutic agents when compared to control cells (Kim et al., 2012). In addition, USP2 is also involved in tumor progression and associated with poor prognosis in oral squamous cell carcinomas (da Silva et al., 2009; Sacco et al., 2010). Therefore, targeting USP2 may be a therapeutic candidate for oncology.
USP7, also known as HAUSP, plays an oncogenic role in the process of cancer development. It has been reported that increased levels of USP7 directly correlates with the development of multiple cancers, such as prostate cancer, multiple myeloma, ovarian cancer, etc. (Tavana and Gu, 2017). The expression of USP7 increases significantly in high-grade prostate cancer biopsies compared with low-grade biopsies. Increased USP7 expression is also observed in multiple myeloma tumors; patients with high USP7 levels showed a poorer overall survival rate when compared to patients with lower USP7 levels (Chauhan et al., 2012). Similarly, USP7 expression is strongly correlated with disease severity and lower overall patient survival in gliomas (Cheng et al., 2013) and epithelial ovarian cancer (Ma and Yu, 2016) as well as in non-small cell lung cancer (Zhao et al., 2015). Over-expression of USP7 promotes cell invasiveness, whereas USP7 knock-down inhibits cell viability in ovarian cancer cells (Ma and Yu, 2016; Tavana and Gu, 2017). USP7 plays specific and direct roles in multiple cancer types and regulates several key proteins, including p53, MDM2, PTEN, and FOXO, which play critical roles in the pathways that consistently cause dysregulation in malignant tumors. USP7 expression closely correlates with cancer stage, tumor size and prognosis, which indicates that USP7 may be a prognostic marker in certain cancers (Tavana and Gu, 2017). Furthermore, small molecules antagonistic to USP7 may function as anticancer agents, targeting certain tumor types.
USP9X, also referred to as FAM, is a substrate-specific DUB, which plays pivotal roles in human cancers, both as an oncogene or as a tumor suppressor. USP9X can deubiquitinate and stabilize MCL1, a protein essential for the survival of stem and progenitor cells from multiple lineages, thereby promoting cell survival. Over-expression of USP9X is closely related to an increase in MCL1 protein, whereas aberrant expression of MCL1 stimulates chemoresistance and disease relapse (Opferman and Green, 2010; Schwickart et al., 2010; D'Arcy et al., 2015). Furthermore, multiple myeloma patients with high level of USP9X had a poorer overall survival rate and prognosis compared to patient with lower USP9X levels (Schwickart et al., 2010). USP9X can also regulate and stabilize CEP131, a centriolar satellite protein, ultimately promoting breast carcinogenesis, indicating that USP9X is a significant regulator of centrosome biogenesis and revealing a critical role for the USP9X/CEP131 axis in breast carcinogenesis (Li et al., 2017). In addition, USP9X can also function as a tumor suppressor. USP9X strongly interacts with LATS, a core kinase in the Hippo pathway. Increased USP9X expression significantly up-regulates and stabilizes LATS and leads to a decrease in the transport of YAP/TAZ into the nucleus as well as inhibiting of their target genes. Furthermore, the expression level of USP9X is positively related to LATS expression but negatively associated with the expression of YAP/TAZ in multiple tumor tissues, such as pancreatic cancer and breast cancer, demonstrating that USP9X potentiates LATS kinase in suppressing tumor growth (Toloczko et al., 2017).
USP10, a primary cytoplasmic DUB, acts as an oncogene or a tumor suppressor by regulating various protein substrates, including FLT3, p53, AMPK, PTEN, etc. USP10 was identified as a critical DUB for the stabilization of FLT3, whose oncogenic forms are clinically validated targets in acute myeloid leukemia (AML). Treatment with USP10 inhibitors promotes proteasome-mediated FLT3 degradation, leading to a decrease in FLT3 protein levels (Weisberg et al., 2017). USP10 can also directly deubiquitinate and stabilize p53, reversing nuclear export and degradation of p53 induced by MDM2. In the case of DNA damage, USP10 is stabilized and translocates to the nucleus to activate and stabilize p53. The research by Yuan et al. demonstrated that USP10 inhibits cancer cell proliferation in wild-type p53 cells, but promotes tumorigenesis in a mutant p53 background (Yuan et al., 2010). Furthermore, USP10 can also interact with and deubiquitinate PTEN, USP10 inhibition stimulates tumor growth and invasion, but this effect can be abolished by reinserting PTEN (Sun et al., 2018). In addition, AMPK is another classic protein substrate of USP10. Under energy stress conditions, USP10 specifically removes ubiquitination on AMPKα and promotes AMPKα phosphorylation. Meanwhile, AMPKα phosphorylation stimulates USP10 activation by phosphorylating Ser76 of USP10, thus forming a feedforward loop between USP10 and AMPK, ensuring amplification of AMPK activation (Deng et al., 2016). All of these studies showed that USP10 can function as an oncogene or tumor suppressor, so intervention in USP10 may be a candidate anti-cancer strategy.
USP14/Ubp6, one of the three distinct DUBs associated with the proteasome, dynamically regulates proteasome activity and removes ubiquitin as well as rescues protein substrates from degradation. USP14 is closely associated with the occurrence and development of multiple malignant tumors, such as breast cancer, lung adenocarcinoma, multiple myeloma and other tumors. Evidence (Zhu et al., 2016) suggests that USP14 is over-expressed in breast cancer tissue compared to adjacent normal tissue; evidence also reveals that over-expression of USP14 in breast cancer patients is tightly correlated to poorer overall survival and prognosis. A study by Wu et al. (Wu et al., 2013) investigated the clinical characteristics and prognostic significance of USP14 in patients with lung adenocarcinoma, as well as its role in cell proliferation in lung cancer. The results showed that the expression of USP14 increases significantly in non-small cell lung cancer (NSCLC) tissue, particularly in lung adenocarcinoma tissues, and over-expression of USP14 promotes tumor cell proliferation. Furthermore, USP14 can also deubiquitinate and stabilize vimentin, a vital protein which involves in epithelial-to-mesenchymal transition(EMT) and significantly promotes cell growth, migration and invasion in human gastric cancer (Zhu et al., 2017). Taken together, these studies suggest that USP14 is involved in the occurrence and progression of multiple malignant tumors.
Other USP family members: USP13, the main regulator of ovarian cancer energy metabolism, specifically deubiquitinates and stabilizes oxoglutarate dehydrogenase and ATP citrate lyase, which can catalyze fatty acid synthesis, glutaminolysis and mitochondrial respiration. Treatment with USP13 inhibitors can significantly suppress ovarian tumor progression and enhance the sensitivity of tumor cells to PI3K/AKT inhibitors (Han et al., 2016). A study (Eichhorn et al., 2012) identified that USP15 functions as a crucial component of the transforming growth factor β (TGF-β) pathway, a cancerogenic factor in advanced cancer. USP15 can deubiquitinate type I TGF-β receptor (TβR-I) and enhance TGF-β activity; and over-expression of USP15 is closely related to TGF-β activation as well as a poor prognosis for glioblastoma patients. The research by Cheryl et al. (Cheryl et al., 2013) examined and evaluated the clinical significance of USP17 in NSCLC for the first time, demonstrating that USP17 is highly expressed in both adenocarcinoma and squamous NSCLC tissue, and the expression level of USP17 may be closely related to distant NSCLC metastasis and recurrence-free survival. Beyond that, other USPs family members are also more or less involved in the occurrence and development of malignant tumors, so USPs may be the potential anticancer target.
Small Molecular Inhibitors Targeting USPs as Anticancer Agents
As mentioned previously, USPs play important roles in various types of cancer and are involved in many different biological processes, including cell cycle control, regulation of histones, DNA damage response and regulation of transcription factors. Targeting USPs may be an effective anticancer therapeutic strategy, indicating that USPs inhibitors may be a class of potential novel therapeutic agents for various types of cancers. However, more extensive research needs to done to explore the specific mechanisms and targets of DUBs, with the objective of studying and designing small-molecule USP inhibitors. There are a large number of small-molecule DUB inhibitors that have been reported, ranging from broad-spectrum inhibitors to specific inhibitors targeting individual DUB enzymes. As shown in Table 1, some inhibitors targeting USPs have been reported. In the following sections, we will primarily introduce the inhibitors of USP7, USP10 and USP14. Of course, among these inhibitors, individual inhibitor can also target several DUBs, including no-USP subfamily.
Inhibitors Targeting USP7
USP7 (HAUSP) has received tremendous attention from researchers due to the key roles played by USP7 in cellular processes, and studies of inhibitors targeting USP7 have become a hot topic. As time goes by, HBX19818, P5091, as well as their analogs, including P045204, P22077, and HBX41108, have been confirmed as inhibitors of USP7. HBX41108 is a potent specific inhibitor targeting USP7, and kinetic analysis revealed that HBX41108 inhibits USP7 by interacting with the enzyme-substrate complex rather than by directly competing with substrate binding (Colland et al., 2009). Carmody and Ruaidhri described in WO 2012056048 inhibition of USP7 with HBX19818 can lead to an increase in ubiquitination and destabilization of NF-κB, ultimately limit the inflammatory response in the treatment of acute or chronic inflammation (Carmody, 2012). The mechanism of action of HBX19818 is to bind with USP7 and weaken the deubiquitinating activity of USP7, leading to the occurrence of apoptosis mediated by p53, in HCT116 colon cancer cells (Reverdy et al., 2012; Lim et al., 2016). Recent research showed that P22077 could induce cell apoptosis and cell proliferation inhibition mediated by p53 in the orthotopic neuroblastoma mouse models of IMR-32, SH-SY5Y, and NGP; since USP7 is overexpressed in neuroblastoma patients, P22077 may be an anti-neuroblastoma agent (Fan et al., 2013; Lim et al., 2016). As disclosed in US 20160090351, P5091 displays a preference for USPs (Hedstrom et al., 2016) and another study (Pal et al., 2014) demonstrated that P5091 is a novel small-molecule inhibitor targeting USP7 and USP47, as well as functions as an active anticancer agent in various tumor models, including MM.1S multiple myeloma cells and HCT-116 colon cancer cells (Chauhan et al., 2012; Pal et al., 2014). Treatment with p-5091 can stabilize p53 protein levels and inhibit cell growth as well as induce the occurrence of apoptosis in multiple myeloma cells resistant to traditional chemotherapy agents.
Inhibitors Targeting USP10
At present, there are few studies regarding USP10 inhibitors. The reported inhibitors of USP10 primarily include P22077, HBX19818, and Spautin-1. As mentioned previously, P22077 and HBX19818 were both originally reported as irreversible inhibitors of USP7. However, a recent study (Weisberg et al., 2017) revealed that P22077 and HBX19818 may also inhibit the deubiquitinase activity of USP10 and induce the proliferation inhibition of mutant-FLT3 (FLT3-ITD)-positive cancer cells. A study by Liu et al. (Liu et al., 2011) has demonstrated that Spautin-1 is a potent small-molecule inhibitor of USP10 and USP13, and treatment with Spautin-1 inhibits the deubiquitinase activity of USP10 and USP13, resulting in an increasing ubiquitination and accelerating degradation of Beclin1 in Vps34 complexes, ultimately inhibiting autophagy. In WO 2014145512, it is demonsrated that the potent small molecule inhibitors of autophagy are useful in treatment of cancers and acute pancreatitis (Yuan et al., 2014). In addtion, a recent study showed that spautin-1 can also trigger immunogenic cancer cell death in vivo and in vitro by causing mitochondrial oxidative injury rather than autophagy inhibition, also demonstrated that spautin-1 may stimulate an apoptotic pathway that results in immunogenic cancer cell death, in TFAM- and AGER-dependent fashion (Yang et al., 2018).
Inhibitors Targeting USP14
B-AP15 is a unique class of proteasome inhibitors that target the 19S RP-associated deubiquitinases, including USP14 and UCHL5 (no-USP subfamily). Treatment with b-AP15 can induce accumulation of polyubiquitin in cells, leading to endoplasmic reticulum stress (ER stress) and oxidative stress, ultimately resulting in apoptosis. Beyond this, b-AP15 can also effectively inhibit the dissemination of acute myeloid leukemia (AML) mouse model of C1498 leukemia, and inhibit the carcinogenesis process in multiple solid tumor mouse models, including Lewis lung carcinomas (LLCs) xenografts, HCT-116 colon carcinoma xenografts overexpressing BCL2, 4T1 breast carcinomas xenografts, etc. (D'Arcy et al., 2011; Pal et al., 2014; Tian et al., 2014). Recent research revealed that b-AP15 can block the degradation of protein substrates, indicating that USP14 inhibition weakens the function of the proteasome (D'Arcy et al., 2015). In addition, the research by Ding et al. showed that b-AP15 can also produce its antitumor therapeutic effects to hepatocellular carcinoma cells by enhancing the endoplasmic reticulum (ER) stress and the unfolded protein response (UPR), as well as inhibiting Wnt/β-catenin and Notch1 signaling pathways (Ding et al., 2018).
IU1 As disclosed in US 20130045992, IU1 can enhance the activity of proteasomes and prevent proteinopathies through inhibition of the function of USP14 and promotion of degradation of the protein substrates (Finley et al., 2013). The mechanism of action of IU1 is different from bortezomib, which inhibits the activity of the entire proteasome, whereas IU1 binds specifically and inhibits USP14 (Lim et al., 2016). IU1, or other similar inhibitors that can target and inhibit USP14, increasing proteasomal-mediated degradation, may function as therapeutic agents in some diseases like Alzheimer's disease (D'Arcy et al., 2015).
WP1130 As described in US 20160090351, small molecule inhibitor WP1130 is a potent DUBs inhibitor (Hedstrom et al., 2016) and can target and inhibit several deubiquitinases, including USP5, USP9X, USP14, and UCHL5 (no-USP subfamily), all of which can regulate stability of the protein substrates and the function of the proteasome (D'Arcy et al., 2015; Lim et al., 2016). Treatment with WP1130 can induce the accumulation of poly-ubiquitin of target protein rapidly, leading to the occurrence of apoptosis. However, the mechanism of action of WP1130 is different from b-AP15; WP1130 cannot induce the occurrence of oxidative stress. The inhibition of UCHL5 and USP14 deubiquitinase activity by WP1130 is expected to block the function of the proteasome in tumor tissue cells, but this still needs to be tested (D'Arcy et al., 2015). WP1130 can also inhibit the deubiquitinase activity of USP9X, and treatment with WP1130 can promote apoptosis by decreasing the level of MCL-1 and increasing the sensitivity of cancer cells to traditional chemotherapy (Lim et al., 2016).
Concluding Remarks
Over the past decade, studies regarding DUBs have made great progress. Accumulating evidences have revealed that a large number of DUBs play significant roles in the occurrence and development of various malignant tumors. USPs are vital and highly specialized class of DUBs with emerging therapeutic potentialities for cancers and targeting USPs has emerged as an appealing novel anticancer therapy. The continued and accelerated development of small molecule inhibitors against USPs could increase the probability of success in the treatment of various malignant cancers and other fatal diseases, but there remain many challenges. Great efforts need be made to comprehensively understand the roles, substrates and regulation mechanisms of USPs in various diseases, and to clarify their emerging roles in carcinogenesis and the clinical application of their inhibitors. To sum up, many USPs are involved in regulation of various pathways relevant to cancer, targeting USPs may be a novel anticancer therapeutic therapy.
Author Contributions
BY and HZ conceived and designed the conception of review article, as well as amended the paper. TY conducted the paper. FY, MY, JC, and QH collected the related research articles and reviews.
Conflict of Interest Statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Acknowledgments
This work was supported by the National Natural Science Foundation for Distinguished Young Scholar of China (No. 81625024), and National Natural Science Foundation of China (No. 81673458).
Abbreviations
DUBs, deubiquitinases or deubiquitinating enzymes; UPS, ubiquitin proteasome system; USPs, ubiquitin-specific proteases
References
Anupama, P., and Nicholas, J. D. (2014). Ubiquitin-specific proteases as therapeutic targets for the treatment of breast cancer. Breast Cancer Res. 16:461. doi: 10.1186/s13058-014-0461-3
Carmody, R. (2012). Inhibitors of Ubiquitin Serine Proteinase 7 for Modulation of NF-κB Activity in the Treatment of Inflammation. Cork: National University of Ireland.
Chauhan, D., Tian, Z., Nicholson, B., Kumar, K. G., Zhou, B., Carrasco, R., et al. (2012). A small molecule inhibitor of ubiquitin-specific protease-7 induces apoptosis in multiple myeloma cells and overcomes bortezomib resistance. Cancer Cell 22, 345–358. doi: 10.1016/j.ccr.2012.08.007
Cheng, C., Niu, C., Yang, Y., Wang, Y., and Lu, M. (2013). Expression of HAUSP in gliomas correlates with disease progression and survival of patients. Oncol. Rep. 29, 1730–1736. doi: 10.3892/or.2013.2342
Cheryl, M., Suzanne, M., Ian, P., Kenneth, A., Michael, S., Keith, K., et al. (2013). The deubiquitinating enzyme USP17 is associated with non-small cell lung cancer (NSCLC) recurrence and metastasis. Oncotarget 4, 1836–1843. doi: 10.18632/oncotarget.1282
Cohn, M. A., Kowal, P., Yang, K., Haas, W., Huang, T. T., Gygi, S. P., et al. (2007). A UAF1-containing multisubunit protein complex regulates the Fanconi anemia pathway. Mol. Cell 28, 786–797. doi: 10.1016/j.molcel.2007.09.031
Colland, F., Formstecher, E., Jacq, X., Reverdy, C., Planquette, C., Conrath, S., et al. (2009). Small-molecule inhibitor of USP7/HAUSP ubiquitin protease stabilizes and activates p53 in cells. Mol. Cancer Ther. 8, 2286–2295. doi: 10.1158/1535-7163.MCT-09-0097
da Silva, S. D., Cunha, I. W., Nishimoto, I. N., Soares, F. A., Carraro, D. M., Kowalski, L. P., et al. (2009). Clinicopathological significance of ubiquitin-specific protease 2a (USP2a), fatty acid synthase (FASN), and ErbB2 expression in oral squamous cell carcinomas. Oral Oncol. 45, e134–e139. doi: 10.1016/j.oraloncology.2009.02.004
D'Arcy, P., Brnjic, S., Olofsson, M. H., Fryknas, M., Lindsten, K., De Cesare, M., et al. (2011). Inhibition of proteasome deubiquitinating activity as a new cancer therapy. Nat. Med. 17, 1636–1640. doi: 10.1038/nm.2536
D'Arcy, P., Wang, X., and Linder, S. (2015). Deubiquitinase inhibition as a cancer therapeutic strategy. Pharmacol. Ther. 147, 32–54. doi: 10.1016/j.pharmthera.2014.11.002
Davis, M. I., Pragani, R., Fox, J. T., Shen, M., Parmar, K., Gaudiano, E. F., et al. (2016). Small molecule inhibition of the ubiquitin-specific protease USP2 accelerates cyclin D1 degradation and leads to cell cycle arrest in colorectal cancer and mantle cell lymphoma models. J. Biol. Chem. 291, 24628–24640. doi: 10.1074/jbc.M116.738567
Deng, M., Yang, X., Qin, B., Liu, T., Zhang, H., Guo, W., et al. (2016). Deubiquitination and activation of AMPK by USP10. Mol. Cell 61, 614–624. doi: 10.1016/j.molcel.2016.01.010
Ding, Y., Chen, X., Wang, B., Yu, B., and Ge, J. (2018). Deubiquitinase inhibitor b-AP15 activates endoplasmic reticulum (ER) stress and inhibits Wnt/Notch1 signaling pathway leading to the reduction of cell survival in hepatocellular carcinoma cells. Eur. J. Pharmacol. 825, 10–18. doi: 10.1016/j.ejphar.2018.02.020
Eichhorn, P. J. A., Rodón, L., Gonzàlez-Juncà, A., Dirac, A., Gili, M., Martínez-Sáez, E., et al. (2012). USP15 stabilizes TGF-β receptor I and promotes oncogenesis through the activation of TGF-β signaling in glioblastoma. Nat. Med. 18, 429–435. doi: 10.1038/nm.2619
Fan, Y. H., Cheng, J., Vasudevan, S. A., Dou, J., Zhang, H., Patel, R. H., et al. (2013). USP7 inhibitor P22077 inhibits neuroblastoma growth via inducing p53-mediated apoptosis. Cell Death Dis. 4:e867. doi: 10.1038/cddis.2013.400
Finley, D. J., King, R. W., Lee, B.-H., Lee, M. J., and Gahman, T. C. (2013). Compositions and Methods for Enhancing Proteasome Activity. Cambridge, MA: President and Fellows of Harvard College.
Han, C., Yang, L., Choi, H. H., Baddour, J., Achreja, A., Liu, Y., et al. (2016). Amplification of USP13 drives ovarian cancer metabolism. Nat. Commun. 7:13525. doi: 10.1038/ncomms13525
Harrigan, J. A., Jacq, X., Martin, N. M., and Jackson, S. P. (2018). Deubiquitylating enzymes and drug discovery: emerging opportunities. Nat. Rev. Drug Discov. 17, 57–78. doi: 10.1038/nrd.2017.152
Hedstrom, L. K., Long, M. J. C., Baggio, R. F., and Lawson, A. P. (2016). Inhibitors of Deubiquitinating Proteases. Waltham, MA: Brandeis University.
Hu, M., Li, P., Song, L., Jeffrey, P. D., Chernova, T. A., Wilkinson, K. D., et al. (2005). Structure and mechanisms of the proteasomeassociated deubiquitinating enzyme USP14. EMBO J. 24, 3747–3756. doi: 10.1038/sj.emboj.7600832
Huang, T. T., Nijman, S. M., Mirchandani, K. D., Galardy, P. J., Cohn, M. A., Haas, W., et al. (2006). Regulation of monoubiquitinated PCNA by DUB autocleavage. Nat. Cell Biol. 8, 339–347. doi: 10.1038/ncb1378
Iraia, G.-S., Godefridus, J. P., Elisa, G., and Jose, A. R. (2013). USP1 deubiquitinase: cellular functions, regulatory mechanisms and emerging potential as target in cancer therapy. Mol. Cancer 12:91. doi: 10.1186/1476-4598-12-91
Kemp, M. (2016). Recent advances in the discovery of deubiquitinating enzyme inhibitors. Prog. Med. Chem. 55, 149–192. doi: 10.1016/bs.pmch.2015.10.002
Kim, J., Kim, W.-J., Liu, Z., Loda, M., and Freeman, M. R. (2012). The ubiquitin-specific protease USP2a enhances tumor progression by targeting cyclin A1 in bladder cancer. Cell Cycle 11, 1123–1130. doi: 10.4161/cc.11.6.19550
Komander, D., Clague, M. J., and Urbe, S. (2009). Breaking the chains: structure and function of the deubiquitinases. Nat. Rev. Mol. Cell Biol. 10, 550–563. doi: 10.1038/nrm2731
Li, X., Song, N., Liu, L., Liu, X., Ding, X., Song, X., et al. (2017). USP9X regulates centrosome duplication and promotes breast carcinogenesis. Nat. Commun. 8:14866. doi: 10.1038/ncomms14866
Liang, Q., Dexheimer, T. S., Zhang, P., Rosenthal, A. S., Villamil, M. A., You, C., et al. (2014). A selective USP1-UAF1 inhibitor links deubiquitination to DNA damage responses. Nat. Chem. Biol. 10, 298–304. doi: 10.1038/nchembio.1455
Lim, K. H., Song, M. H., and Baek, K. H. (2016). Decision for cell fate: deubiquitinating enzymes in cell cycle checkpoint. Cell. Mol. Life Sci. 73, 1439–1455. doi: 10.1007/s00018-015-2129-2
Liu, J., Xia, H., Kim, M., Xu, L., Li, Y., Zhang, L., et al. (2011). Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13. Cell 147, 223–234. doi: 10.1016/j.cell.2011.08.037
Ma, M., and Yu, N. (2016). Ubiquitin-specific protease 7 expression is a prognostic factor in epithelial ovarian cancer and correlates with lymph node metastasis. Onco Targets. Ther. 9, 1559–1569. doi: 10.2147/OTT.S100050
McClurg, U., and Robson, C. (2015). Deubiquitinating enzymes as oncotargets. Oncotarget 6, 9657–9668. doi: 10.18632/oncotarget.3922
McKeon, J. E., Sha, D., Li, L., and Chin, L. S. (2015). Parkin-mediated K63-polyubiquitination targets ubiquitin C-terminal hydrolase L1 for degradation by the autophagy-lysosome system. Cell. Mol. Life Sci. 72, 1811–1824. doi: 10.1007/s00018-014-1781-2
Nijman, S. M., Huang, T. T., Dirac, A. M., Brummelkamp, T. R., Kerkhoven, R. M., D'andrea, A. D., et al. (2005). The deubiquitinating enzyme USP1 regulates the Fanconi anemia pathway. Mol. Cell 17, 331–339. doi: 10.1016/j.molcel.2005.01.008
Okada, K., Ye, Y. Q., Taniguchi, K., Yoshida, A., Akiyama, T., Yoshioka, Y., et al. (2013). Vialinin A is a ubiquitin-specific peptidase inhibitor. Bioorg. Med. Chem. Lett. 23, 4328–4331. doi: 10.1016/j.bmcl.2013.05.093
Opferman, J. T., and Green, D. R. (2010). DUB-le trouble for cell survival. Cancer Cell 17, 117–119. doi: 10.1016/j.ccr.2010.01.011
Pal, A., Young, M. A., and Donato, N. J. (2014). Emerging potential of therapeutic targeting of ubiquitin-specific proteases in the treatment of cancer. Cancer Res. 74, 4955–4966. doi: 10.1158/0008-5472.CAN-14-1211
Pfoh, R., Lacdao, I. K., and Saridakis, V. (2015). Deubiquitinases and the new therapeutic opportunities offered to cancer. Endocr. Relat. Cancer 22, T35–T54. doi: 10.1530/ERC-14-0516
Qiu, G.-Z., Sun, W., Jin, M.-Z., Lin, J., Lu, P.-G., and Jin, W.-L. (2017). The bad seed gardener: deubiquitinases in the cancer stem-cell signaling network and therapeutic resistance. Pharmacol. Ther. 172, 127–138. doi: 10.1016/j.pharmthera.2016.12.003
Reverdy, C., Conrath, S., Lopez, R., Planquette, C., Atmanene, C., Collura, V., et al. (2012). Discovery of specific inhibitors of human USP7/HAUSP deubiquitinating enzyme. Chem. Biol. 19, 467–477. doi: 10.1016/j.chembiol.2012.02.007
Sacco, J. J., Coulson, J. M., Clague, M. J., and Urbe, S. (2010). Emerging roles of deubiquitinases in cancer-associated pathways. IUBMB Life 62, 140–157. doi: 10.1002/iub.300
Schwickart, M., Huang, X., Lill, J. R., Liu, J., Ferrando, R., French, D. M., et al. (2010). Deubiquitinase USP9X stabilizes MCL1 and promotes tumour cell survival. Nature 463, 103–107. doi: 10.1038/nature08646
Selvaraju, K., Mazurkiewicz, M., Wang, X., Gullbo, J., Linder, S., and D'arcy, P. (2015). Inhibition of proteasome deubiquitinase activity: a strategy to overcome resistance to conventional proteasome inhibitors? Drug Resist. Updat. 21–22, 20–29. doi: 10.1016/j.drup.2015.06.001
Singh, N., and Singh, A. B. (2016). Deubiquitinases and cancer: a snapshot. Crit. Rev. Oncol. Hematol. 103, 22–26. doi: 10.1016/j.critrevonc.2016.04.018
Skaar, J. R., Pagan, J. K., and Pagano, M. (2014). SCF ubiquitin ligase-targeted therapies. Nat. Rev. Drug Discov. 13, 889–903. doi: 10.1038/nrd4432
Sun, J., Li, T., Zhao, Y., Huang, L., Sun, H., Wu, H., et al. (2018). USP10 inhibits lung cancer cell growth and invasion by upregulating PTEN. Mol. Cell Biochem. 441, 1–7. doi: 10.1007/s11010-017-3170-2
Tavana, O., and Gu, W. (2017). Modulation of the p53/MDM2 interplay by HAUSP inhibitors. J. Mol. Cell Biol. 9, 45–52. doi: 10.1093/jmcb/mjw049
Tian, Z., D'arcy, P., Wang, X., Ray, A., Tai, Y. T., Hu, Y., et al. (2014). A novel small molecule inhibitor of deubiquitylating enzyme USP14 and UCHL5 induces apoptosis in multiple myeloma and overcomes bortezomib resistance. Blood 123, 706–716. doi: 10.1182/blood-2013-05-500033
Toloczko, A., Guo, F., Yuen, H. F., Wen, Q., Wood, S. A., Ong, Y. S., et al. (2017). Deubiquitinating enzyme USP9X suppresses tumor growth via LATS kinase and core components of the hippo pathway. Cancer Res. 77, 4921–4933. doi: 10.1158/0008-5472.CAN-16-3413
Villamil, M. A., Chen, J., Liang, Q., and Zhuang, Z. (2012). A noncanonical cysteine protease USP1 is activated through active site modulation by USP1-associated factor 1. Biochemistry 51, 2829–2839. doi: 10.1021/bi3000512
Villamil, M. A., Liang, Q., and Zhuang, Z. (2013). The WD40-repeat protein-containing deubiquitinase complex: catalysis, regulation, and potential for therapeutic intervention. Cell Biochem. Biophys. 67, 111–126. doi: 10.1007/s12013-013-9637-1
Wei, R., Liu, X., Yu, W., Yang, T., Cai, W., Liu, J., et al. (2015). Deubiquitinases in cancer. Oncotarget 6, 12872–12889. doi: 10.18632/oncotarget.3671
Weisberg, E. L., Schauer, N. J., Yang, J., Lamberto, I., Doherty, L., Bhatt, S., et al. (2017). Inhibition of USP10 induces degradation of oncogenic FLT3. Nat. Chem. Biol. 13, 1207–1215. doi: 10.1038/nchembio.2486
Williams, S. A., Maecker, H. L., French, D. M., Liu, J., Gregg, A., Silverstein, L. B., et al. (2011). USP1 deubiquitinates ID proteins to preserve a mesenchymal stem cell program in osteosarcoma. Cell 146, 918–930. doi: 10.1016/j.cell.2011.07.040
Wu, N., Liu, C., Bai, C., Han, Y. P., Cho, W. C., and Li, Q. (2013). Over-expression of deubiquitinating enzyme USP14 in lung adenocarcinoma promotes proliferation through the accumulation of beta-catenin. Int. J. Mol. Sci. 14, 10749–10760. doi: 10.3390/ijms140610749
Yang, M., Li, C., Zhu, S., Cao, L., Kroemer, G., Zeh, H., et al. (2018). TFAM is a novel mediator of immunogenic cancer cell death. Oncoimmunology 7:e1431086. doi: 10.1080/2162402X.2018.1431086
Yuan, J., Han, N., Yi, H., Wang, Y., Yang, S., and Wong, J. C. (2014). Preparation of Potent Small Molecule Inhibitors of Autophagy Useful in Treatment of Cancers and Acute Pancreatitis. Cambridge, MA: F. Hoffmann-Laroche Ltd.
Yuan, J., Luo, K., Zhang, L., Cheville, J. C., and Lou, Z. (2010). USP10 regulates p53 localization and stability by deubiquitinating p53. Cell 140, 384–396. doi: 10.1016/j.cell.2009.12.032
Zhao, G. Y., Lin, Z. W., Lu, C. L., Gu, J., Yuan, Y. F., Xu, F. K., et al. (2015). USP7 overexpression predicts a poor prognosis in lung squamous cell carcinoma and large cell carcinoma. Tumour Biol. 36, 1721–1729. doi: 10.1007/s13277-014-2773-4
Zhu, H. Q., and Gao, F. H. (2017). The molecular mechanisms of regulation on USP2's alternative splicing and the significance of its products. Int. J. Biol. Sci. 13, 1489–1496. doi: 10.7150/ijbs.21637
Zhu, L., Yang, S., He, S., Qiang, F., Cai, J., Liu, R., et al. (2016). Downregulation of ubiquitin-specific protease 14 (USP14) inhibits breast cancer cell proliferation and metastasis, but promotes apoptosis. J. Mol. Histol. 47, 69–80. doi: 10.1007/s10735-015-9650-3
Keywords: ubiquitin-specific proteases, ubiquitin proteasome system, deubiquitinases, anticancer, inhibitors
Citation: Yuan T, Yan F, Ying M, Cao J, He Q, Zhu H and Yang B (2018) Inhibition of Ubiquitin-Specific Proteases as a Novel Anticancer Therapeutic Strategy. Front. Pharmacol. 9:1080. doi: 10.3389/fphar.2018.01080
Received: 10 June 2018; Accepted: 06 September 2018;
Published: 27 September 2018.
Edited by:
Zhi Sheng, Virginia Tech, United StatesReviewed by:
Yun Dai, Virginia Commonwealth University, United StatesChun Hei Antonio Cheung, National Cheng Kung University, Taiwan
Copyright © 2018 Yuan, Yan, Ying, Cao, He, Zhu and Yang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Bo Yang, eWFuZzkyNEB6anUuZWR1LmNu
Hong Zhu, aG9uZ3podUB6anUuZWR1LmNu