Skip to main content

SYSTEMATIC REVIEW article

Front. Oncol., 01 December 2022
Sec. Molecular and Cellular Oncology
This article is part of the Research Topic Reviews in Molecular and Cellular Oncology View all 47 articles

PABPC1——mRNA stability, protein translation and tumorigenesis

Ya QiYa Qi1Min Wang*Min Wang1*Qi JiangQi Jiang2
  • 1Department of Gynecology and Obstetrics, Shengjing Hospital Affiliated of China Medical University, Shenyang, Liaoning, China
  • 2Second Department of Clinical Medicine, China Medical University, Shenyang, Liaoning, China

Mammalian poly A-binding proteins (PABPs) are highly conserved multifunctional RNA-binding proteins primarily involved in the regulation of mRNA translation and stability, of which PABPC1 is considered a central regulator of cytoplasmic mRNA homing and is involved in a wide range of physiological and pathological processes by regulating almost every aspect of RNA metabolism. Alterations in its expression and function disrupt intra-tissue homeostasis and contribute to the development of various tumors. There is increasing evidence that PABPC1 is aberrantly expressed in a variety of tumor tissues and cancers such as lung, gastric, breast, liver, and esophageal cancers, and PABPC1 might be used as a potential biomarker for tumor diagnosis, treatment, and clinical application in the future. In this paper, we review the abnormal expression, functional role, and molecular mechanism of PABPC1 in tumorigenesis and provide directions for further understanding the regulatory role of PABPC1 in tumor cells.

Background

There are about 1914 human RNA binding proteins (RBPs) identified in studies to date, accounting for 7.5% of protein-coding genes (1). RBPs are highly species conserved and play a key role in maintaining homeostasis of gene expression (2). RBPs play a key role in regulating various RNA processes through both temporal and spatial regulation of expression in membranes or phase-separated subcellular compartments of dynamic shuttling, interactions with specific protein partners and RNA targets, and control of all metabolic processes of RNA. This includes splicing, cleavage and polyadenylation as well as translocation, translation and degradation of coding RNAs, non-coding RNAs and microRNAs (37). Recent studies have shown that RBPs not only play important roles in normal cells, but also become major players in cancer development and proliferation (8, 9). (Figure 1) RBPs were initially classified according to their RNA-binding structural domains that bind various types of RNAs, while they were purified and classified according to the RNA sequences they interact with, with one class of factors including proteins that recognize polyadenylate tails added to the 3’ ends of most mRNAs (10). Poly(A)-binding proteins (PABPs) represent one of the major classes of regulatory proteins and are found only in eukaryotes (11). PABP1 (also called PABPC1), the prototypical PABP, is highly conserved RNA-binding protein in eukaryotes, and although yeast has only one PABPC (Pab1p), most animals contain multiple paralogs with spatially and temporally distinct expression patterns. Vertebrates express PABPC1, PABPC3, PABPC4, PABPC4L, the X chromosome-encoded protein PABPC5 and PABPC1-like (PABPC1L, also known as embryonic PABP (ePAB) in the cytosol and PABPN1 and PABPN1-like (PABPN1L, also known as embryonic PABP2 (ePABP2) in the nucleus. (Table 1) PABPC1 and PABPC4 are nucleocytoplasmic shuttling proteins, and RNA is the main factor determining their nucleoplasmic localization. In contrast, nuclear PABPs are structurally and functionally distinct from cytoplasmic PABPs, which are involved in stimulating mRNA maturation and export (10, 1214).

FIGURE 1
www.frontiersin.org

Figure 1 PABPs proteins act as RNA binding proteins involved in post-transcriptional regulation of gene expression in tumors: bind the poly(A) tail of mRNA, including those of their own transcripts, and regulate processes of mRNA metabolism such as pre-mRNA splicing, alternative polyadenylation and mRNA stability; participate in microRNA-induced target gene inactivation and nonsense-mediated mRNA decay; regulate translation initiation and involved in translationally coupled mRNA turnover.

TABLE 1
www.frontiersin.org

Table 1 The expression and known function of PABPs.

Protein-coding genes are transcribed by RNA polymerase II production co-transcriptionally mature mRNA precursors. Co-transcriptional maturation of precursor mRNAs is achieved by recruitment of protein complexes through the carboxy-terminal structural domain (CTD) of RNA polymerase II, including the addition of a 5’ cap to the nascent transcript, removal of introns by the spliceosome, and addition of a 3 ‘ poly(A)tail (15). The post-transcriptional addition of 3’ poly(A)tails to eukaryotic mRNAs is important in order to their nuclear export, translation and stability. Poly(A)-binding proteins (PABPs) have the ability to bind poly(A) tails, interact with specific sequences in mRNAs, and have general and specific roles for different mRNA metabolism. PABPs are involved in mRNA in almost all metabolic pathways: polyadenylation/deadenylation, mRNA export, mRNA surveillance, translation, mRNA degradation, microRNA-related regulation and expression regulation during development, especially controlling mRNA-specific translation and stability, accompanying mRNA from initial intranuclear production to final destruction (13, 16). The translation mechanism of most eukaryotic mRNAs is cap-dependent translation, i.e. translation control is dependent on post-transcriptional modifications. Cap-dependent translation initiation involves the binding of the eIF4F complex, consisting of the cap-binding protein eIF4E, the scaffolding protein eIF4G and the the RNA helicases enzyme eIF4A, to the 7-methylguanosine cap located at the 5’ end of the mRNA. MRNA translation also regulates gene expression, which explains the difference between protein abundance and its corresponding mRNA (1722). In fact, in tumors, changes in the translation of existing mRNAs are more extensive than those occurring in transcription downstream of aberrant signaling pathways (15).

Cytoplasmic poly A binding protein (PABPC1) is significantly highly expressed in a variety of tumors, especially in ovarian, breast, gastric and hepatocellular carcinomas (2329). PABPC1 regulates the proliferation and transformation of gastric cancer cells in vitro and in vivo (25), and is also directly involved in breast carcinogenesis by affecting chemoresistance (24). PABPC1, an oncogene in hepatocellular carcinoma, induces cell proliferation by promoting tumor cells into S phase and enhancing anchorage-independent growth (28). LncRNA SNHG14 upregulates PABPC1 through H3K27 acetylation and regulates PTEN signaling in hepatocarcinogenesis to promote tumor cell proliferation and angiogenesis (29). PABPC1 is involved in a variety of signaling pathways involved in tumorigenesis and progression, including Nfr2 signaling, Hippo signaling and PTEN signaling (24, 29, 30), and PABPC1 may be a potential target for tumor therapy.

Cloning, characterization, and tissue distribution of PABPC1

Although there are numerous PABPs in mammals, almost all studies have focused on the prototype PABPC1. The PABPC1 gene, originally isolated and cloned in human melanoma cells by Grange et al. in 1978, is conserved throughout eukaryotes and is located on human chromosome 8 (31, 32). PABPC1 consists of four RNA binding domains (RRM1-4), a linker region and a C-terminal MLLE domain. RRM1-2 binds poly(A) with high specificity, RRM3-4 binds poly(A) with slightly lower affinity and can bind adenine/uridine rich RNA (33, 34). In addition to RNA, its C-terminal MLLE domain can mediate binding to the peptide motif PAM2, which allows PABPC1 to bind to more proteins such as PAIP1, PAIP2, GW182 and MKRN1 (3539). Most of these PAM2 motif-containing proteins are involved in mRNA translation and processing, including eukaryotic release factor 3 (eRF3), the deadenylase complex PAN2/PAN3 and TOB1/2 proteins regulating the CCR4-NOT deadenylase complex, and the GW182 protein family. Moreover, the E3 ubiquitin ligase EDD is the only protein other than PABPC1 that contains this MLLE structural domain, suggesting that both appear to have a deeper role in proteostasis (38, 40, 41). Protein expression in different tissues in the Human Protein Atlas dataset (https://www.proteinatlas.org/) showed that PABPC1 was mainly expressed in respiratory system, proximal digestive tract, gastrointestinal tract. Among them, the expression of nasopharynx, esophagus, stomach, urinary bladder, testis,tonsil,bone marrow is the highest, with low tissue specificity. The subcellular localization and expression of PABPC1 were mainly concentrated in the cytoplasm, suggesting that PABPC1 is involved in mRNA stability and translation regulation. PABPC1 can shuttle between the nucleus and cytoplasm (42), while at steady state, it is mainly diffusely distributed in the cytoplasm (13, 42). In addition to localization in the cytoplasm and nucleus, PABPC1 is also present at local translational sites such as neuronal dendrites and is enriched at the leading edge of migrating fibroblasts (43). In contrast, mRNA-bound PABPC1 cannot enter the nucleus because its RRM cannot interact with importinβ (44). PABPC1 is not always uniformly distributed in the cytoplasm but assembles into dynamic non-membrane foci that are incorporated into stress granules during cellular stress conditions such as osmotic shock (45), and these stress granules are sites of mRNA storage and remodeling by stalled translation initiation complexes composed of mRNA, small ribosomal subunits, specific initiation factors, and many mRNA-binding proteins.

The interactome of PABPC1

All aspects of life require tight regulation of gene expression, which is regulated through a complex interconnected network that includes multiple levels of transcription, mRNA processing, mRNA stability, and mRNA translation. Post-transcriptional control mechanisms are complex and important. The regulation of post-transcriptional gene expression is regulated by both mRNA cis-elements (e.g. 5’- and 3’-untranslated regions) and trans-acting factors (e.g. RBPs) (7). They form RNA-protein complexes through specific interactions to regulate mRNA metabolism and protein translation.

PABPC1 and mRNA translation

Most eukaryotic mRNAs are recruited to the ribosome by recognition of a 5’m7GpppN cap. One model assumes that mRNAs form a closed loop structure that involves 5’-3’ end proximity induced by four specific interactions, namely cap-eIF4E- eIF4G-PABPC1-poly(A). The 5’ cap interaction factor and the 3 ‘poly(A) binding protein plays an important role in bringing the 5’-3’ ends of mRNAs in close proximity to each other and promoting translation and stability of mRNAs (4648). This mode of translation is treated as a general model of eukaryotic translation in today’s biology textbooks. However, despite the direct observation of loop assembly in some cells and in vitro reconstruction systems, several findings have questioned the generality of the model across different mRNA and biological systems (4952).

Translation of most mRNAs is regulated at the time of initiation. At translation initiation, eIF4E binds to the 5’ cap while PABPC1 binds to the poly(a) tail, and eIF4G binds the two together to form a complex. Then eIF3 and the 43s ribosomal subunit bound to met-tRNA bind to the complex, initiating translation initiation. eIF3 is an initiation factor that functions by facilitating the linkage of the 48s initiation complex to the 60s subunit. Transmission electron microscopy that several PABPC1 molecules in the PABPC1- poly(a) complex were linearly arranged to form a worm-like structure. Further enhancement of translation was reported with the increasing length of poly(a), which seems to be associated with an increase in the number of PABPC1 molecules in the polyplex bound to poly(a) (53). The tethered structural domain of PABPC1 stimulates translation initiation, suggesting that the poly(a) length dependence of translation is due to the increased availability of PABPC1 bound at the 3’ end of the mRNA. The long poly(a) tails on most vertebrate mRNAs function as enhancers of translation initiation by recruiting multiple PABPC1 to the 3’ ends of mRNAs (54). Borman et al. extracted mammalian cytoplasm and partially depleted ribosomes and associated initiation factors by ultracentrifugation. Replication of the cap-poly(A) synergistic system in vitro demonstrated that PABPC1 enhances translation on poly(a) of mRNA in a cap-dependent manner, in addition to finding that binding of PABPC1 to poly(A) increased the affinity of PABPC1 for eIF4G and eIF4E for cap, which in turn increased translation initiation. Consistent with this, mutations that eliminate or alter PABPC1-eIF4G interactions result in reduced translation levels (55, 56). Unfertilized eggs and early embryos of animals lack the ability to produce or destroy mRNA, so for the regulation of protein production, they cannot adjust the number of mRNA molecules used for translation, but rather by changing the length of the poly(A) tail at the end of each mRNA molecule. In animal oocytes and early embryos, the poly(A) length of mRNAs strongly affects translation efficiency, with mRNAs with longer poly(A) tails being more efficiently translated than shorter ones, but this linkage gradually disappears later in development. Artificially giving higher levels of PABPC in frog eggs improves translation of the short tails and even achieves the same translation efficiency as long-tailed mRNAs, suggesting that there is competition for PABPC between the two (53).

The role of PABPC1 in stimulating translation initiation was demonstrated (57, 58); however, the role of PABPC1 in translation is not limited to regulating initiation. Using a reconstructed mammalian in vitro translation system, Ivanov et al. found that PABPC1 directly stimulates translation termination (59, 60). PABPC1 stimulates translation termination through the interaction of its C-terminal structural domain with eukaryotic peptide release factor 3 (eRF3). Eukaryotic translation termination requires two release factors: eukaryotic polypeptide release factor (eRF1)1 and eRF3 (61). ERF3 is a GTPase with an intrinsic PAM2 motif that binds to PABPC1, and a protein core (eRF3c) that interacts with eRF1 to ensure that the latter is loaded on the ribosome and induces its conformational rearrangement. The binding action of PABPC1 to eRF3 enhances the loading of the release factor on the ribosome, thereby preventing the interaction of the eRF1-eRF3 complex with the nonsense-mediated decay mechanism and inhibiting the reading of the termination codon. The C-terminal structural domain of PABPC1 interacts with the N-terminal structural domain of eRF3a to enhance the binding of the eRF1-eRF3 complex to the ribosome, while eRF3a itself plays an active role in translation termination (6267).

In addition, PABP-interacting proteins 1 and 2 (PAIP1 and PAIP2), bind the same structural domains of PABPC1 and regulate its translational activity (68). The results of Ivanov et al. showed that both PAIP1 and PAIP2 prevent translation termination due to premature stop codons by controlling PABPC1 activity (59).PAIP1 contains PAM1 and PAM2 motifs, and a structural domain homologous to the mediate eIF4G structural domain (meIF4G) (69), whereas PAIP2 contains only the PAM1 and PAM2 motifs. PAIP1 binds the RRM1-RRM2 motif of PABPC1 with high affinity, whereas PAIP2 binds the CTC structural domain with low affinity. PAIP1 is able to induce translational activity by binding to eIF3, eIF4A and PABPC1 simultaneously. In contrast, PAIP2 binds PABPC1 competitively with PAIP1 or eIF4G, reducing the binding affinity of PABPC1 to the poly(A) tail, and therefore, PAIP2 inhibits translation in vivo or in vitro (70, 71). Although PAIP2a has two PABPC1 interaction motifs, PAM1 and PAM2, at its N-terminal and C-terminal ends, respectively, PAM1 binds mainly to RRM2-RRM3 with hundreds of times the binding affinity of PAM2 and plays a major role mainly in PAIP2a-mediated dissociation of PABPC1 from poly(A). Recent studies have shown that PAIP2a competitively inhibits the binding of RRM to poly(A), first by binding to RRM2 to form a transient ternary complex and then by replacing poly(A) by RRM3.

Notably, Bartel et al. suggested that while PABPC1 plays a critical role in protecting mRNA from premature decay, its contribution to translation in postembryonic mammalian cell lines is minimal (53). Previous studies have identified a role for PABPC1 in promoting translation, either in frog oocytes or early embryos, in vitro, or in cell extracts, while in rabbit reticulocyte lysates, PABPC1 had the least effect on translation (13, 57, 7274). So further experiments are needed to determine whether this difference is due to cell type or to differences between cell cytoplasm and ex vivo extracts. It is also necessary to distinguish whether it is due to PABPC1 promoting translation activation or mRNA stability.

PABPC1 and mRNA stability

The mRNAs of different genes are degraded at significantly different rates, as short as a few minutes or as long as several days (75). Different conditions or developmental environments also alter the rate of degradation, affecting the dynamic accumulation of mRNA and ultimately the steady-state abundance of mRNA (75, 76). Termini often determine the fate of the RNA molecules, and 3’ tailing(non-templated nucleotide addition at the 3’ end of RNA) is one of the most common types of RNA modifications, with tailing catalyzed by a set of non-templated terminal nucleotidyltransferases (TENTs) (77, 78). In addition to the attachment of poly(A) polymerase-catalyzed poly(A) tails to mRNA in the form of transcriptional coupling (79), post-transcriptional modifications such as guanylation and uridylation are included to control RNA stability and activity (80, 81). Several cis-acting elements present in the 3’ untranslated region of target mRNAs have been shown to be involved in regulating polyadenylation/de-enylation of specific mRNAs (39). These cis-acting sequences are recognized by microRNAs, AU-rich element-binding proteins, polyadenylation factors or other RNA-binding factors that greatly influence mRNA fate and ultimately gene expression (38, 82, 83).

Bartel et al. showed that almost all endogenous mRNAs are degraded primarily by a mechanism of deadenylation linkage, implying that the rate of deadenylation of each mRNA largely determines its half-life, while other contributions such as endonucleolytic cleavage and deadenylation-independent decapping are unexpectedly little (84). Further use of mathematical models to extend the range of known deadenylation rate constants from 60-fold to 1000-fold emphasizes that mRNAs with faster deadenylation rate constants can reach the short tail length associated with mRNA destruction more quickly, while mRNAs with the same 20-nt tail but from different genes can also have widely different decay rate constants. The tails become so short that they cannot synergistically bind PABPC1 and homeostasis is out of balance.

Recent studies have revealed the presence of noncanonical other forms of mRNA tailing, such as U tails and mixed tails (85). Initially uridylation of mRNA was found at the 3’ end of miRNA-mediated cleavage products (86), and U tails have also been detected on human replication-dependent histone mRNAs, which are uridylated and degraded at the end of the S period or after inhibition of DNA replication (87). Lim et al. developed a method called TAIL-seq for deep sequencing of a large portion of the 3’ end sequences of the transcriptome and found that the vast majority of mammalian mRNAs are subject to uridylation (88). Upon deadenylation, mRNAs (with A-tails shorter than ∼25 nt) lose PABPC1 and instead gain a U-tail by the redundant action of TUT4 and TUT7, which triggers decay by serving as a mark that is recognized by downstream decay factors (89). PABPC1 preferentially protects the long poly(A) tail from uridylation, and this specific inhibition may result from length-dependent binding of PABPC1 (90, 91).

The family of La-related proteins (LARPs) is characterized by sharing a ‘La-module’ (92): it contains a La motif (LaM) followed by an RNA recognition motif (RRM), and some LARPs have unique activities in specific aspects of RNA metabolic processes. Among them, LARP3 and LARP7 is nuclear and protects a subset of RNAs with 3′ oligo(U) (9395) while LARP 1, 4 and 6 are highly divergent and reside in the cytoplasm (96). LARP1 and LARP4 were recently found to contain a PAM2 motif that binds directly to poly(A) and PABPC1 with variable affinity for the MLLE structural domain of PABPC1. LARP4 is an mRNA poly(A) stabilizer that promotes mRNA translation and inhibits deadenylation. LARP1 is a translation blocker that inhibits translation of mRNAs containing 5 ‘TOP (terminal oligopyrimidine) motifs in mRNA translation and exhibits similar poly(A) length and mRNA stability protection to LARP4 (97, 98). Mattijssen et al. confirmed the interaction of LARP1 with PABPC1 independent of RNA by endogenous pull-down in the presence of RNAase I and further verified the binding to PABPC1 in bacterially expressed LARP1. With the addition of Dey680-labeled A20 RNA, the amount of PABPC1 coprecipitated in the His-LARP1 pull-down increased, indicating that the LARP1 interaction between PABPC1 may be enhanced by binding to RNA (99).

It is now generally accepted that RNA-binding proteins negatively regulate gene expression by accelerating the deadenylation of target mRNAs. The most widely studied example is the RNA-binding protein TTP, which binds directly to AREs and recruits CCR4-NOT complexes to accelerate the deadenylation and decay of target mRNAs (100, 101). In marked contrast, positive regulation through polyadenylation has been most extensively studied in the context of early development (102).Spinocerebellar ataxia type 2 (SCA2) gene product, Ataxin-2, a member of the RNA-binding protein Like-Sm (LSm) family, is a cytoplasmic protein that binds and stabilizes many mRNA sequences, which is involved in many aspects of RNA metabolism (103), and it harbors an LSm domain and LSm-associated domain (LSmAD) within the N-terminal half. Yokoshi successfully identified Ataxin-2 as a member of the group of RBPs that target AREs and related elements within the 3′ UTRs of mRNAs to control RNA stability and protein expression (104). Although interaction with PABPC1 might increase the efficiency of Ataxin-2 binding to RNAs, it is dispensable for recognition of the distinct elements by Ataxin-2. In accordance, they found that Ataxin-2 binds preferentially to sites that are close to the polyadenylation site. These results suggest that interaction with PABPC1 stabilizes the binding of Ataxin-2 to RNAs, and more importantly, PABPC1 probably targets A-rich elements within the 3′ UTR, including the polyadenylation signal, in addition to the poly(A) tail. Inagaki et al. showed that Ataxin-2 indirectly recognizes the poly(A) tail through PAM2-mediated contact with PABPC1, which is assumed to increase the binding specificity of Ataxin-2 to the cis-element close to the polyadenylation site of the mRNA and enables the recruitment of a noncanonical poly(A) polymerase (PAPD4) to the polyadenylation site (39).

PABPC1 and nonsense-mediated decay of PTC-containing mRNAs

The premature termination codon (PTC) is found in approximately 30% of disease-associated mutations, and because it promotes aberrant as well as premature translation termination, mRNA surveillance mechanisms recognize, respond to, and ultimately produce nonsense-mediated mRNA decay (NMD). Nonsense-mediated mRNA decay detects and eliminates erroneous mRNA transcripts with premature termination codons, representing a translation-dependent post-transcriptional mRNA quality control process that prevents the synthesis of truncated, potentially harmful proteins (105109). Because one-third of all known disease-causing mutations are predicted to produce PTC, NMD is an important regulator of human inherited disease phenotypes.

In mammalian cells PTCs are recognized and NMD is activated if the PTC is located >50 nucleotides upstream of an exon-junction complex (EJC) (110, 111), a protein complex deposited on the mRNA during splicing (112). During splicing in the nucleus, exon-exon junctions are labeled by EJC and these complexes act as NMD activation signals during translation in the cytoplasm. In addition to the EJC-dependent NMD described above, another EJC-independent NMD pathway targets mRNAs with long 3’UTRs (113116). Three upshift code proteins, UPF1, UPF2, and UPF3, are at the core of the NMD pathway. UPF1 plays a key role in the initiation of NMD and is an ATP-dependent RNA unwinding enzyme, and UPF1, UPF2, and UPF3 interact so that these three proteins can be separated as a complex. After recognition of PTC, a series of events initiate mRNA degradation by recruiting heterodimers SMG5/SMG7 and SMG6 (117, 118).

During eukaryotic translation termination, PABPC1 interacts with ribosome-bound eRF3a to stimulate polypeptide release and subsequent ribosome recycling; however, when PABPC1 interaction with eRF3a is reduced by an unusually long 3’UTR, UPF1 binds to eRF3a and activates NMD. thus, PABPC1 binding at the termination codon binding in the vicinity can inhibit NMD by mimicking the presence of the poly(A) tail (119). The physical distance between the premature termination codon and PABPC1 is a key determinant of PTC recognition, and by increasing the distance between poly(a)-bound PABPC1 and PTC by lengthening the 3’UTR, the normal termination codon can trigger nonsense-mediated mRNA decay (114). Conversely, NMD can inhibit EJC-enhanced NMD by folding the poly(a) tail near the PTC or tethering it to the PTC (120, 121).

Two independent studies have shown that the C-terminal structural domain of PABPC1, which mediates the interaction with eRF3a, is nonessential for the inhibition of NMD-targeted reporter molecules (120, 121). To elucidate which structural domains and interaction regions of PABPC1 are responsible for the NMD repressive effect, Fatscher et al. designed and generated six mutants, including an RRM-containing mutant lacking the C-terminal MLLE structural domain and an MLLE structural domain mutant, and ligated the mutants to the TPI-4MS2-SMG5 reporter gene construct to increase the mRNA abundance of the reporter gene increased to the same extent as that of PABPC1. The results indicate that the MLLE motif of PABPC1 interacting with eRF3a, as well as other interactions involving the MLLE motif of PABPC1, are not strictly necessary for pegging PABPC1 to suppress NMD. In contrast, the introduction of two point mutations into RRM2 of PABPC1 that eliminate binding to eIF4G (PABPC1M161A/D165K) no longer inhibits NMD, and it is the binding of eIF4G but not eRF3a that contributes to NMD inhibition by pegged PABPC1, suggesting the eIF4G-mediated mRNA recycling and ribosome recycling as NMD regulators importance (119)

Involved in miRNA-induced target gene inactivation

MicroRNAs (miRNAs) are a new class of non-protein-coding endogenous small RNAs that are important regulatory molecules. It regulates gene expression post-transcriptionally through translational repression, mRNA splicing and mRNA decay initiated by rapidly dying genes. miRNAs silence the expression of most eukaryotic transcriptomes and regulate a wide range of biological processes, including cell growth, division and differentiation, as well as metabolism and development (122124). At the molecular level, miRNA bases are incompletely paired with the 3’ untranslated region of the target mRNA and bind to the Argonute (Ago) protein in its induced silencing complex (miRISC) to inhibit translation or trigger degradation of the mRNA.

TNRC6A, TNRC6B and TNRC6C are members of the GW182 protein family and components of the miRNA-induced silencing complex (125, 126). the TNRC6-PABPC1 interaction is required for effective miRNA-mediated silencing (127). the carboxy-terminal structural domain of the GW182 protein, called the silencing structural domain, includes intermediate and terminal sub-structural domains (128). The intermediate structural domain can be further subdivided into M1 and M2 regions flanked by poly(A)-binding PAM2. PABPC1 assembles the miRISC complex by recruiting GW182 and bringing the death enzyme complex in close proximity to the mRNA. In contrast, TNRC6 promotes the separation of PABPC1 from mRNA thereby exposing its tail end to promote deadenylation, reducing translation efficiency and causing mRNA decapitation and 5’-3’ exonuclease nucleic acid degradation in somatic cells (129).

PABPC1 and virus replication

Viruses do not have a specific apparatus to encode their own protein synthesis, but rather compete with the host to translate their own viral mRNA, where the most important mechanism of interference is to disrupt translation initiation on polyadenylate mRNA. Active modification of PABPC1 allows viruses to block translation initiation in the host. Depending on the structure of viral mRNA, different RNA and DNA viruses have different mechanisms to manipulate PABPC1 (130134).

Lentiviruses (HIV-1 and HIV-2), microRNA viruses and cuplaviruses infect cells and cleave PABPC1 into fragments at several predetermined positions between its RNA binding domain and C-terminal structural domain, limiting the translation of host mRNA. In contrast, rotavirus NSP3 displaces and expels PABPC1 in interaction with eIF4G to mediate translation termination (135). It was shown that members of the herpesviridae, eutheroviridae and bunyaviridae relocate PABPC1 to the nucleus after infection (136). In contrast, specific viral proteins for PABPC1 relocalization were also identified in Kaposi’s sarcoma-associated herpesviruses and rotaviruses (45, 137139).

PABPC1 and immunoglobulin secretion

There is growing evidence that selective processing of mRNAs, including selective splicing, 3’ selective polyadenylation and mRNA stability/translational regulation, is a major mechanism that promotes protein diversification (140143). Selective splicing and polyadenylation in eukaryotic cells generate multiple mRNA types with different 3’UTR lengths from the same gene (144, 145). PABPN1 has been identified as a key molecule regulating selective splicing and polyadenylation, and deep sequencing after siRNA knockdown has shown that PABPC1 enhances selective poly(A) at the distal end of pre-mRNA. A site use (146).

Plasma cells are terminally differentiated B cells that produce large amounts of secretory immunoglobulins. And the first identified example of selective polyadenylation is that the 3’ end of immunoglobulin heavy chain (IgH) mRNA is processed in a cell type-specific manner during B-cell differentiation (147, 148). Switching between mIg and sIg is a tightly controlled process regulated by mRNA selective splicing and selectable polyadenylation. Peng et al. reported that hnRNPLL specifically binds to PABPC1 in T cells and plasma cells, and that PABPC1 facilitates the binding of hnRNPLL to immunoglobulin mRNA and regulates the switch from mIgH to sIgH in plasma cells (149). Further protein truncation and mutation experiments demonstrated that RRM1 is the key structural domain mediating the interaction of PABPC1 with hnRNPLL.

PABPC1 in cancer development

Human and mouse heart cells proliferate immediately after birth, during which PABPC1 expression is enhanced (13, 54). After they grow, cell proliferation is inhibited and PABPC1 expression is reduced. Dengue viruses use PABPC1 in their host cells to transcribe viral mRNA, which leads to viral proliferation. PABPC1 similarly accumulates in cytomegalovirus-infected cells.

The expression of PABPC1 in 31 tumor specimens was analyzed using the Tumor Genome Atlas (TCGA) and Tissue Genotype Expression (GTEx) datasets in comparison to normal tissues. Elevated levels were found in acute myeloid leukemia (LAML), esophageal cancer (ESCA), bladder uroepithelial carcinoma (BLCA), gastric cancer (STAD), ovarian cancer (OV), rectal adenocarcinoma (READ), testicular cancer (TGCT), and COAD (colon cancer). High PABPC1 expression was also found in diffuse large B-cell lymphoma (DLBC), head and neck squamous cell carcinoma (HNSC), lung squamous carcinoma (LUSC), prostate cancer (PRAD), and uterine sarcoma (UCS), suggesting that the progression of the above tumors requires high PABPC1 expression (Figure 2).

FIGURE 2
www.frontiersin.org

Figure 2 PABPC1 is involved in various aspects of tumor malignant biological behavior as an RNA binding protein. NPM1mA, SNHG14, Sp1 and p300 significantly induce upregulation of PABPC1 expression by increasing acetylation of PABPC1 promoter H3K27 and H2K37; Inactivated MKRN3 reduces PABPC1 ubiquitination, promotes its binding to 3’ poly(A) tails of mRNAs, and thereby accelerates global protein synthesis and promotes cancer proliferation and progression. PABPC1 regulates the generation and stability of tumor-associated RNAs, and the intracellular tumorigenic miR-19a-3p, miR-21-5p, lnc-BDNF-AS, and lnc-PAGBC levels are elevated, along with increased translation of CCNB1, PEG10, SLC7A11, and IFI27, and elevated protein levels. PABPC1 enhances miR-19a-3p, miR-21-5p loading in tumor cell-derived exosomes, target vascular endothelial cells to induce angiogenesis, and CD8+ T cells to impair the immune function.

PABPC1 in liver tumor

Hepatocellular liver cancer is the major malignancy of the liver and is the fifth most common and third deadliest cancer in the world (150, 151). Currently, despite the advances in liver transplantation and surgery in the treatment of liver cancer, the high recurrence and metastasis rates also make the prognosis of liver cancer still poor (152). Therefore, it is crucial to search for the underlying mechanisms of hepatocarcinogenesis and identify new therapeutic targets (153).

Zhu et al. screened gene modules highly correlated with HCC prognosis by WGCNA and constructed PPI networks for the genes in the modules (27). 8 genes were screened using MCODE software and survival analysis was performed using Kaplan-Meier mapping database, showing that PABPC1 was significantly associated with liver cancer prognosis. Further studies confirmed that mRNA and protein levels of PABPC1 were significantly upregulated in HCC patients. GSEA analysis also showed that the P53 signaling pathway, WNT signaling pathway and cell cycle were highly positively correlated with PABPC1 expression. the P53 pathway is one of the classical pathways controlling cell cycle progression and Wnt/β-catenin signaling is involved in a variety of processes including embryogenesis, The P53 pathway is one of the classical pathways controlling cell cycle progression and Wnt/β-catenin signaling plays a key role in the regulation of various processes such as embryogenesis, differentiation and tumorigenesis.

MicroRNAs are involved in hepatocellular carcinoma development and metastasis as a tumor-associated regulator. miRNA-induced RNA-induced silencing complex (RISC) promotes mRNA degradation or translation inhibition. Zhang et al. purified RISC-interacting proteins using anti-AGO2 antibody and identified 12 AGO2-binding proteins by mass spectrometry (28). PABPC1 was found to be highly expressed in hepatocellular carcinoma, especially in high-grade hepatocellular carcinoma. PABPC1 acts as an oncogene in hepatocellular carcinoma, accelerating cell proliferation and promoting anchorage-independent growth by promoting cell entry into S and G2/M phases. The specific mechanism is that PABPC1 interacts with AGO2 in the cytoplasm of hepatocellular carcinoma cells, and this interaction increases the recruitment of mRNA to RISC and represses multiple oncogenes. For miRNA-targeted genes, PABPC1 increases the efficiency of miRNA repression, and this efficiency is higher in cancer cells than in normal cells. For miRNA non-target genes, PABPC1 interacted with eIF4G to inhibit the decay of mRNA, making translation higher in cancer cells than in normal cells and thus increasing cellular activity.

Long non-coding RNAs (lncRNAs) play important roles in various biological processes at epigenetic, transcriptional and post-transcriptional levels, and are of increasing interest for their critical role in tumorigenesis and progression (154158). Small nucleolar RNA host genes (SNHG) long non-coding RNAs are frequently dysregulated in various types of cancers and are involved in tumorigenesis and progression. Studies have shown that SNHG14 upregulates PABPC1 expression in hepatocellular carcinoma cells via H3K27 acetylation (29), and PABPC1 silencing Zhaattenuates SNHG14-induced proliferation and angiogenesis in Hep3B cells, while PABPC1 overexpression abrogates the effect of sh-SNHG14 on HepG2 cell proliferation and angiogenesis. sh-SNHG14/PABPC1 effects on cell proliferation and angiogenesis was regulated by inhibition of PTEN signaling, a tumor suppressor involved in cell proliferation or angiogenesis through negative regulation of PI3K/Akt signaling or VEGF expression, respectively.

Hepatoblastoma is the most common type of liver tumor in children and arises from embryonic parenchymal hepatocytes or hepatoblasts (159, 160). It has a better prognosis compared to hepatocellular carcinoma, but the overall prognosis remains poor for patients who cannot be surgically resected or are chemotherapy resistant (161). m6-methyladenosine (m6A) is considered to be the most abundant mRNA modification in eukaryotic cells and occurs at the N6 position of adenosine (162, 163). As a reversible mRNA modification, it is involved in regulating various aspects of RNA metabolism and also in the oncogenic process. Recent studies have shown that m6A-containing mRNAs exhibit accelerated deadenylation mediated by direct recruitment of the CCR4-NOT complex through YTHDF2 (41, 164). YTHDF2 is has been reported to act as a reader of m6A recognizing and binding specific m6A modifications that also include IGF2BP1-3, YTHDF3 and YTHDC2, among others (165). The study showed that in hepatoblastoma, IGF2BP1 similarly acts as readers to recognize and bind m6A modifications in SLC7A11 mRNA, stabilize it and upregulate its expression in an m6A-dependent manner (26). the CCR4-NOT complex mediates the deadenylation of SLC7A11 mRNA, and IGF2BP1 competitively binds PABPC1 to block BTG2/CCR4-NOT complex recruitment, thereby inhibiting the deadenylation of SLC7A11 mRNA and enhancing SLC7A11 mRNA stability and expression. In contrast, SLC7A11 acts as an oncogene that promotes hepatoblastoma proliferation and enhances ferroptosis resistance in tumor cells.

PABPC1 in esophageal cancer

Esophageal cancer, the sixth most common cause of cancer-related death worldwide (166), is an aggressive malignancy, of which esophageal squamous cell carcinoma is the predominant histologic subtype, accounting for more than 70% of total cases. Esophageal cancer exhibits local infiltration and lymph node metastasis at advanced or even initial diagnosis, thus leading to poor prognosis and lower survival rates.

Zhang et al. used their own cohort and public database TCGA sample analysis to conclude that PABPC1 expression is upregulated in esophageal squamous cancer tissues and its elevated expression is associated with tumor cell differentiation and poor prognosis in patients (167). Pabpc1 promotes esophageal squamous cancer cell proliferation, migration and invasion and inhibits apoptosis. The IFN pathway was identified by RNA-seq as a key mediator of esophageal squamous carcinoma progression exerted by PABPC1. IFN27 is a key regulator in the IFN-α signaling pathway (168170) and its upregulation was one of the most significant alterations in DEGs upregulated by PABPC1. The investigators further observed a significant decrease in 5-ethynyluridine (EU)-tagged IFI27 mRNA after PABPC1 knockdown, suggesting that PABPC1 regulates IFI27 expression at the post-transcriptional level. Further construction of RNA-binding structural domain RRM1-deficient plasmids demonstrated that PABPC1 interacts with eukaryotic initiation factor protein 4G (eIF4G) to enhance the stability of IFI27 mRNA by extending its half-life.

In eukaryotic cells, RNA exosomes are essential for the degradation and processing of target RNAs, and the RNA exosome core contains barrel-like structures (composed of EXOSC4-9) and cap-like structures (composed of EXOSC1-3). EXOSC2 is an important catalytic part of the RNA exosome complex, and EXOSC2 knockdown severely reduced RNA exosome function (171, 172). The investigators rescued the decrease in IFI27mRNA stability by EXOSC2 knockdown and EXOSC2 knockdown increased PABPC1 binding to IFI27mRNA, similar to how PABPC1 knockdown increased the binding affinity of EXOSC2 to IFI27mRNA, all suggesting that PABPC1 competes with the RNA exosome to prevent degradation of IFI27mRNA (167). Various miRNAs from exosomes are major inducers of angiogenesis by activating signal transduction pathways that trigger the promotion of endothelial cell growth and migration. PABPC1 increases miR-21-5p expression in esophageal squamous cancer cells and encapsulates miR-21-5p in ESCC cell-derived exosomes via ACUGAUG sequences to target vascular CXCL10 inhibition in endothelial cells to induce angiogenesis.

PABPC1 in leukemia

Tumor-derived exosomes can shuttle between tumor cells and immune cells and participate in tumor immune escape. Exosomal miRNAs contribute to the reprogramming of immune target cell functions. Targeted export of miRNAs to exosomes may require specific mechanisms. Recent studies have shown that RBPs are involved in the specific loading of miRNAs into exosomes. For example, hnRNPA2B1 was shown to enhance the export of miRNA exosomes from T cells. The relevant functions of Ago2 and Y-box in miRNA transport were demonstrated in colon cancer cells and HEK293T cells, respectively. The proteomics of two different populations of exosomes isolated from human seminal plasma showed that PABPC1 could promote RNA loading of exosomes.

Acute myeloid leukemia (AML) is a heterogeneous disease that possesses multiple cytogenetic and molecular abnormalities with an extremely poor prognosis (173). Mutations in the nuclear phosphoprotein gene, particularly the type A NPM1 mutation, are among the most common and clinically relevant genetic alterations. It accounts for approximately 30% of all AML cases (174, 175). As with other malignant diseases, leukemia uses a variety of mechanisms to evade killing by immune cells. T cells play a central role in mediating and coordinating the immune response against cancer, and many strategies aim to harness the potential of t cells to recognize and kill cancer cells in a targeted manner (176, 177). The study found that serum from AML patients with NPM1 mutations and leukemia cells in a co-culture system impaired the immune function of CD8+ T cells (142). Mechanistically, leukemic cells secrete miR-19a-3p into the tumor microenvironment via small extracellular vesicles (sEVs), which are controlled by the NPM1 mutant protein/CTCF/PABPC1 signaling axis. SEV-related miR-19a-3p is internalized by CD8+ T cells, directly inhibiting solute carrier family 6 member 8 (SLC6A8)-mediated of creatine import and reduces ATP production to enhance immune escape of leukemic cells. To investigate the specific process of miR-19a-3p specific packaging in sEVs, the investigators found that knockdown of PABPC1 expression significantly reduced miR-19a-3p levels in OCI/AML3-sEV and Blasts/mut-sEV, while miR-19a-3p levels in OCI/AML3 cells and Blasts/mut cells were almost unchanged, and the interaction between PABPC1 and miR-19a-3p in OCI/AML3 and Blasts/mut cells was further verified by miRNA pull-down and RIP assays, which indicated that PABPC1 plays a key role in miR-19a-3p encapsulation into sEVs.

Homeostatic regulation of protein synthesis plays a crucial role in hematopoietic stem cell differentiation and cellular transformation, and a major clinical challenge in the treatment of patients with HR-MDS is the progression to AML, which is driven by developmentally abnormal hematopoietic stem and progenitor cells with different metabolic changes (178). Trans-transport RNA-derived fragments (tRFs) are small emerging non-coding RNAs that are commonly altered in tumors (179). Studies have shown that stem cell-enriched pseudouridylation (Ψ) of tRF isoform 2 (mini-tRF containing 5’ terminal oligopurine (mTOG)) selectively inhibits abnormal protein synthesis programs, thereby promoting implantation and differentiation of hematopoietic stem and progenitor cells in patients with myelodysplastic syndromes. On the basis of mTOG-Ψ targeting PABPC1, the interaction of mTOG and PABPC1 impeded the recruitment of PAPI1 as revealed using isotope exchange proteomics. The translation of the transcript sharing pyrimidine-rich sequence (PES) and the 5’ terminal oligopyrimidine bundle (TOB) encoding the mechanical component of the protein was strongly inhibited in the 5’ untranslated region, while mTOG dysregulation resulted in increased aberrant translation of 5′ PES mRNA in malignant MDS-HSPC, which was clinically associated with leukemic transformation and reduced patient survival (68, 180, 181).

PABPC1 in lung tumor

Lung cancer has the second highest cancer incidence and the second highest cancer-related mortality rate worldwide, with approximately 85% of lung cancer cases being non-small cell lung cancer, and non-small cell lung cancer consisting primarily of lung adenocarcinoma and squamous cell carcinoma of the lung (21, 182). Although tyrosinase inhibitors and immunotherapy have shown significant survival benefits for some patients, their 5-year overall survival rate is less than 15%. Researchers have recently identified that the MKRN3-PABPC1 pathway plays an important role in lung cancer pathogenesis (183). Germline mutations in the makorin ring finger protein 3(MKRN3) gene cause central precocious puberty (CPP), which is epidemiologically associated with various diseases in adulthood, including cancer (3133) (184). Li et al. analyzed public data from cancer genomics studies and found recurrent inactivation of genomic MKRN3 aberrations in non-small cell lung cancer (183). low levels of MKRN3 expression were associated with poor patient survival, and in both in vivo and ex vivo, MKRN3 reduced cell growth and proliferation. Further proteomic screening by mass spectrometry identified PABPC1 as the major substrate of MKRN3. the tumor suppressive function of MKRN3 is dependent on its E3 ubiquitin ligase activity, and MKRN3 missense mutations were found to impair MKRN3-mediated PABPC1 ubiquitination in patients. the A203/F206/P208 of MKRN3 is a key interaction residue mediating PABPC1 ubiquitination, and the second RRM in PABPC1 is required for PABPC1 ubiquitination. Non-protein hydrolytic ubiquitination attenuates its binding to mRNA3’ poly(a), thereby inhibiting total protein synthesis and maintaining lung cancer cells with limited proliferative capacity. MKRN3 restoration induces cell cycle arrest in the G2/M phase, an effect also due to less PABPC1 binding to the poly(a) tail of CCNB1 mRNA, downregulating its protein levels. binding, downregulating its protein levels. This study contributes to the understanding of the genetic drivers of PABPC1 ubiquitination in non-small cell lung cancer.

PABPC1 in other cancers

In addition to the above mentioned tumors, PABPC1 has clinical and prognostic relevance to other tumors. For example, Eisermann et al. reported that PABPC1 is a novel AR co-regulator that regulates AR function and subcellular localization in prostate cancer cells (185). knockdown of PABPC1 inhibited the proliferation of AR-positive prostate cancer cells. An et al. demonstrated that PABPC1 was upregulated in gastric cancer and its high expression was significantly associated with poorer overall and disease-free survival (25). et al. further demonstrated that PABPC1 knockdown induced apoptosis in gastric cancer cells through upregulation of pro-apoptotic and downregulation of anti-apoptotic proteins, and that miR-34c was a target of PABPC1. PABPC1 acts as an oncogene promoting the growth and invasion of ovarian cancer cells in ovarian cancer partly through regulation of the EMT process (23).

Histone acetylation modification is one of the major types of histone modifications for chromatin structural remodeling and transcriptional regulation. Acetylation neutralizes the positive charge of lysine and unfolds chromatin structure, thereby attenuating DNA-histone interactions and enhancing transcriptional activity. Dong et al. found that SNHG14 regulates the expression of PABPC1 through H3K27ac8, which activates the Nrf2 signaling pathway and promotes breast carcinogenesis and resistance to trastuzumab (24). et al. demonstrated by microarray that H3K27ac was enriched in the PABPC1 promoter region of hepatocellular carcinoma cells and that SNHG14 regulated PABPC1 expression in hepatocellular carcinoma cells through H3K27ac. The study showed that PABPC1 interacted with BDNF-AS and increased its expression by stabilizing the expression of BDNF-AS, and overexpression of both inhibited proliferation, migration and invasion of glioblastoma and promoted apoptosis (30). PABPC1 interacts with lncRNA-PAGBC in gallbladder cancer (186), enhancing the stability of the latter, while lncRNA-PAGBC competitively binds miR-133b and miR-511 and activates the AKT/mTOR pathway to promote tumor growth and metastasis.

Further study of the relationship between PABPC1 and other tumors is important for understanding the mechanisms by which PABPC1 promotes tumor development and its potential role in tumor therapy (Table 2).

TABLE 2
www.frontiersin.org

Table 2 The expression and role of PABPC1 in multiple tumors.

Conclusions

The central dogma of molecular biology has guided scientists’ research for a long time, and the targets of tumor research have focused on the final protein function. As scientific research continues, scientists have discovered that the translation process from mRNA to protein also plays an important role in tumor progression and drug resistance. Changes in mRNA translation in tumors are more extensive than those in transcription downstream of aberrant signaling pathways, and in response to oncogenic signaling or microenvironmental stressors, alterations in intracellular mRNA translation allow rapid changes in the proteome, increasing cancer cell adaptation, leading to tumor formation, spread metastasis and treatment resistance (15).There is no doubt that PABPC1 plays an important role in mRNA translation and stability as an RNA binding protein. Over the past two decades, The issue surrounding the importance of PABPC1 and poly(A) in translation has been controversial. Through exhaustive experiments in different cell types and cell conditions, researchers have demonstrated that poly(A) tail length and translation efficiency are coupled by PABPC1 at early stages of embryonic development, while at later stages, this relationship shifts to promote mRNA stability (53).

Most past studies on PABPC1 in tumors have focused on detecting gene copy number and/or protein expression of PABPC1 in different types of tumor tissues or cells, and its high expression in some solid tumors is associated with poorer patient prognosis (2330, 142, 161, 183, 185190). PABPC1 selectively regulates transcripts by interacting with non-coding RNAs such as long-stranded non-coding RNAs, microRNAs specific translation and expression of specific oncogenic proteomes, enhancing cancer cell plasticity and thus promoting therapeutic evasion of cancer progression (24, 2830, 167, 186).

Studies of PABPC1 initially revealed its broad function as a tumor and metastasis-promoting protein, and PABPC1 gene overexpression was associated with abnormalities in tumor cell proliferation, apoptosis, invasion and distant metastasis. The effect of PABPC1 on cell proliferation and migration was verified by knocking down and overexpressing PABPC1 in ovarian cancer cell lines, and the deletion of PABPC1 significantly inhibited the viability and invasiveness of SKOV3 cells, while the upregulation of PABPC1 in A2780 cells showed the opposite result (23). Similarly, PABPC1 depletion in gastric cancer cells BGC823, MKN-45 and MGC803 reduced cell proliferation rate and colony-forming activity, and tumor xenografting assays suggested that PABPC1 knockdown significantly inhibited gastric cancer growth in vivo (191). Similar studies include metastatic duodenal cancer (192), glioblastoma (30), and hepatocellular carcinoma (2729). All these data provide evidence supporting the possible involvement of PABPC1 in tumorigenesis as an oncogene.

These current findings are far from sufficient, and more features and biological functions of PABPC1 protein remain to be explored. Further studies are urgently needed to demonstrate the molecular and cellular mechanisms by which PABPC1 plays a role in the development of different tumor cells, and to elaborate the tumor-promoting effects of PABPC1, which may pave the way for the development of inhibitors or agonists and the treatment of tumor patients with abnormal expression of PABPC1.

Data availability statement

The original contributions presented in the study are included in the article/supplementary materials. Further inquiries can be directed to the corresponding author.

Author contributions

YQ and QJ wrote the manuscript, surveyed and analyzed the literature. MW contributed with intellectual expertise and supervised this work. All authors contributed to the article and approved the submitted version.

Funding

The work was supported by the Outstanding Scientific Fund of Shengjing Hospital (Grant No. 201705). And this work was also supported by the 2019 Liaoning Provincial Education Department Project (ZF2019017).

Acknowledgments

We thank Mr. Chou for his thoughtful suggestions.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

References

1. Gerstberger S, Hafner M, Tuschl T. A census of human RNA-binding proteins. Nat Rev Genet (2014) 15:829–45. doi: 10.1038/nrg3813

PubMed Abstract | CrossRef Full Text | Google Scholar

2. Matia-González AM, Laing EE, Gerber AP. Conserved mRNA-binding proteomes in eukaryotic organisms. Nat Struct Mol Biol (2015) 22:1027–33. doi: 10.1038/nsmb.3128

PubMed Abstract | CrossRef Full Text | Google Scholar

3. Brinegar AE, Cooper TA. Roles for RNA-binding proteins in development and disease. Brain Res (2016) 1647:1–8. doi: 10.1016/j.brainres.2016.02.050

PubMed Abstract | CrossRef Full Text | Google Scholar

4. Glisovic T, Bachorik JL, Yong J, Dreyfuss G. RNA-Binding proteins and post-transcriptional gene regulation. FEBS Lett (2008) 582:1977–86. doi: 10.1016/j.febslet.2008.03.004

PubMed Abstract | CrossRef Full Text | Google Scholar

5. Shi D-L. RBM24 in the post-transcriptional regulation of cancer progression: Anti-tumor or pro-tumor activity? Cancers (2022) 14:1843. doi: 10.3390/cancers14071843

PubMed Abstract | CrossRef Full Text | Google Scholar

6. Shi D-L, Grifone R. RNA-Binding proteins in the post-transcriptional control of skeletal muscle development, regeneration and disease. Front Cell Dev Biol (2021) 9:738978. doi: 10.3389/fcell.2021.738978

PubMed Abstract | CrossRef Full Text | Google Scholar

7. Pereira B, Billaud M, Almeida R. RNA-Binding proteins in cancer: Old players and new actors. Trends Cancer (2017) 3:506–28. doi: 10.1016/j.trecan.2017.05.003

PubMed Abstract | CrossRef Full Text | Google Scholar

8. Qin H, Ni H, Liu Y, Yuan Y, Xi T, Li X, et al. RNA-Binding proteins in tumor progression. J Hematol Oncol J Hematol Oncol (2020) 13:90. doi: 10.1186/s13045-020-00927-w

CrossRef Full Text | Google Scholar

9. Mohibi S, Chen X, Zhang J. Cancer The’RBP’eutics – RNA-binding proteins as therapeutic targets for cancer. Pharmacol Ther (2019) 203:107390. doi: 10.1016/j.pharmthera.2019.07.001

PubMed Abstract | CrossRef Full Text | Google Scholar

10. Mangus DA, Evans MC, Jacobson A. Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression. Genome Biol (2003) 4:223. doi: 10.1186/gb-2003-4-7-223

PubMed Abstract | CrossRef Full Text | Google Scholar

11. Wigington CP, Williams KR, Meers MP, Bassell GJ, Corbett AH. Poly(A) RNA-binding proteins and polyadenosine RNA: new members and novel functions. Wiley Interdiscip Rev RNA (2014) 5:601–22. doi: 10.1002/wrna.1233

PubMed Abstract | CrossRef Full Text | Google Scholar

12. Goss DJ, Kleiman FE. Poly(A) binding proteins–are they all created equal? Wiley Interdiscip Rev RNA (2013) 4:167–79. doi: 10.1002/wrna.1151

PubMed Abstract | CrossRef Full Text | Google Scholar

13. Smith RWP, Blee TKP, Gray NK. Poly(A)-binding proteins are required for diverse biological processes in metazoans. Biochem Soc Trans (2014) 42:1229–37. doi: 10.1042/BST20140111

PubMed Abstract | CrossRef Full Text | Google Scholar

14. Zhao L-W, Fan H-Y. Revisiting poly(A)-binding proteins: Multifaceted regulators during gametogenesis and early embryogenesis. BioEssays (2021) 43:2000335. doi: 10.1002/bies.202000335

CrossRef Full Text | Google Scholar

15. Fabbri L, Chakraborty A, Robert C, Vagner S. The plasticity of mRNA translation during cancer progression and therapy resistance. Nat Rev Cancer (2021) 21:558–77. doi: 10.1038/s41568-021-00380-y

PubMed Abstract | CrossRef Full Text | Google Scholar

16. Hosoda N, Lejeune F, Maquat LE. Evidence that poly(A) binding protein C1 binds nuclear pre-mRNA poly(A) tails. Mol Cell Biol (2006) 26:3085–97. doi: 10.1128/MCB.26.8.3085-3097.2006

PubMed Abstract | CrossRef Full Text | Google Scholar

17. Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, et al. Global quantification of mammalian gene expression control. Nature (2011) 473:337–42. doi: 10.1038/nature10098

PubMed Abstract | CrossRef Full Text | Google Scholar

18. Ghaemmaghami S, Huh W-K, Bower K, Howson RW, Belle A, Dephoure N, et al. Global analysis of protein expression in yeast. Nature (2003) 425:737–41. doi: 10.1038/nature02046

PubMed Abstract | CrossRef Full Text | Google Scholar

19. Liu Y, Beyer A, Aebersold R. On the dependency of cellular protein levels on mRNA abundance. Cell (2016) 165:535–50. doi: 10.1016/j.cell.2016.03.014

PubMed Abstract | CrossRef Full Text | Google Scholar

20. Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, et al. Proteogenomic characterization of human colon and rectal cancer. Nature (2014) 513:382–7. doi: 10.1038/nature13438

PubMed Abstract | CrossRef Full Text | Google Scholar

21. Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, Doyle MJ, et al. Integrated genomic and proteomic analyses of gene expression in mammalian cells*. Mol Cell Proteomics (2004) 3:960–9. doi: 10.1074/mcp.M400055-MCP200

PubMed Abstract | CrossRef Full Text | Google Scholar

22. Vogel C, Abreu R de S, Ko D, Le S-Y, Shapiro BA, Burns SC, et al. Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line. Mol Syst Biol (2010) 6:400. doi: 10.1038/msb.2010.59

PubMed Abstract | CrossRef Full Text | Google Scholar

23. Feng C, Han Y-H, Qi N, Li J, Sheng Q-H, Liu Y, et al. Functional implications of PABPC1 in the development of ovarian cancer. Open Med Wars Pol (2021) 16:805–15. doi: 10.1515/med-2021-0278

CrossRef Full Text | Google Scholar

24. Dong H, Wang W, Mo S, Liu Q, Chen X, Chen R, et al. Long non-coding RNA SNHG14 induces trastuzumab resistance of breast cancer via regulating PABPC1 expression through H3K27 acetylation. J Cell Mol Med (2018) 22:4935–47. doi: 10.1111/jcmm.13758

PubMed Abstract | CrossRef Full Text | Google Scholar

25. An T, Deng L, Wang Y, Yang Z, Chai C, Ouyang J, et al. The prognostic impacts of PABPC1 expression on gastric cancer patients. Future Oncol Lond Engl (2021) 17:4471–9. doi: 10.2217/fon-2021-0101

CrossRef Full Text | Google Scholar

26. Liu L, He J, Sun G, Huang N, Bian Z, Xu C, et al. The N6-methyladenosine modification enhances ferroptosis resistance through inhibiting SLC7A11 mRNA deadenylation in hepatoblastoma. Clin Transl Med (2022) 12:e778. doi: 10.1002/ctm2.778

PubMed Abstract | CrossRef Full Text | Google Scholar

27. YuFeng Z, Ming Q. Expression and prognostic roles of PABPC1 in hepatocellular carcinoma. Int J Surg Lond Engl (2020) 84:3–12. doi: 10.1016/j.ijsu.2020.10.004

CrossRef Full Text | Google Scholar

28. Zhang H, Sheng C, Yin Y, Wen S, Yang G, Cheng Z, et al. PABPC1 interacts with AGO2 and is responsible for the microRNA mediated gene silencing in high grade hepatocellular carcinoma. Cancer Lett (2015) 367:49–57. doi: 10.1016/j.canlet.2015.07.010

PubMed Abstract | CrossRef Full Text | Google Scholar

29. Zhang H, Xu H-B, Kurban E, Luo H-W. LncRNA SNHG14 promotes hepatocellular carcinoma progression via H3K27 acetylation activated PABPC1 by PTEN signaling. Cell Death Dis (2020) 11:646. doi: 10.1038/s41419-020-02808-z

PubMed Abstract | CrossRef Full Text | Google Scholar

30. Su R, Ma J, Zheng J, Liu X, Liu Y, Ruan X, et al. PABPC1-induced stabilization of BDNF-AS inhibits malignant progression of glioblastoma cells through STAU1-mediated decay. Cell Death Dis (2020) 11:81. doi: 10.1038/s41419-020-2267-9

PubMed Abstract | CrossRef Full Text | Google Scholar

31. Gorgoni B, Gray NK. The roles of cytoplasmic poly(A)-binding proteins in regulating gene expression: A developmental perspective. Brief Funct Genomic Proteomic (2004) 3:125–41. doi: 10.1093/bfgp/3.2.125

PubMed Abstract | CrossRef Full Text | Google Scholar

32. Munroe D, Jacobson A. Tales of poly(A): a review. Gene (1990) 91:151–8. doi: 10.1016/0378-1119(90)90082-3

PubMed Abstract | CrossRef Full Text | Google Scholar

33. Adam SA, Nakagawa T, Swanson MS, Woodruff TK, Dreyfuss G. mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol Cell Biol (1986) 6:2932–43. doi: 10.1128/mcb.6.8.2932-2943.1986

PubMed Abstract | CrossRef Full Text | Google Scholar

34. Sachs AB, Bond MW, Kornberg RD. A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: domain structure and expression. Cell (1986) 45:827–35. doi: 10.1016/0092-8674(86)90557-x

PubMed Abstract | CrossRef Full Text | Google Scholar

35. Grimm C, Pelz J-P, Schneider C, Schäffler K, Fischer U. Crystal structure of a variant PAM2 motif of LARP4B bound to the MLLE domain of PABPC1. Biomolecules (2020) 10:E872. doi: 10.3390/biom10060872

CrossRef Full Text | Google Scholar

36. Wu Y, Xu K, Qi H. Domain-functional analyses of PIWIL1 and PABPC1 indicate their synergistic roles in protein translation via 3’-UTRs of meiotic mRNAs. Biol Reprod (2018) 99:773–88. doi: 10.1093/biolre/ioy100

PubMed Abstract | CrossRef Full Text | Google Scholar

37. Huang K-L, Chadee AB, Chen C-YA, Zhang Y, Shyu A-B. Phosphorylation at intrinsically disordered regions of PAM2 motif-containing proteins modulates their interactions with PABPC1 and influences mRNA fate. RNA N Y N (2013) 19:295–305. doi: 10.1261/rna.037317.112

CrossRef Full Text | Google Scholar

38. Xie J, Kozlov G, Gehring K. The “tale” of poly(A) binding protein: the MLLE domain and PAM2-containing proteins. Biochim Biophys Acta (2014) 1839:1062–8. doi: 10.1016/j.bbagrm.2014.08.001

PubMed Abstract | CrossRef Full Text | Google Scholar

39. Inagaki H, Hosoda N, Tsuiji H, Hoshino S-I. Direct evidence that ataxin-2 is a translational activator mediating cytoplasmic polyadenylation. J Biol Chem (2020) 295:15810–25. doi: 10.1074/jbc.RA120.013835

PubMed Abstract | CrossRef Full Text | Google Scholar

40. Hu Y, Yin K-L, Ma X, Xia H-F. Anti-PABPC1 co-immunoprecipitation for examining the miRNAs directly targeting the 3’-UTR of EED mRNA. PloS One (2014) 9:e103695. doi: 10.1371/journal.pone.0103695

PubMed Abstract | CrossRef Full Text | Google Scholar

41. Schäfer IB, Yamashita M, Schuller JM, Schüssler S, Reichelt P, Strauss M, et al. Molecular basis for poly(A) RNP architecture and recognition by the Pan2-Pan3 deadenylase. Cell (2019) 177:1619–31.e21. doi: 10.1016/j.cell.2019.04.013

PubMed Abstract | CrossRef Full Text | Google Scholar

42. Lemay J-F, Lemieux C, St-André O, Bachand F. Crossing the borders: poly(A)-binding proteins working on both sides of the fence. RNA Biol (2010) 7:291–5. doi: 10.4161/rna.7.3.11649

PubMed Abstract | CrossRef Full Text | Google Scholar

43. Gray NK, Hrabálková L, Scanlon JP, Smith RWP. Poly(A)-binding proteins and mRNA localization: who rules the roost? Biochem Soc Trans (2015) 43:1277–84. doi: 10.1042/BST20150171

PubMed Abstract | CrossRef Full Text | Google Scholar

44. Sato H, Maquat LE. Remodeling of the pioneer translation initiation complex involves translation and the karyopherin importin beta. Genes Dev (2009) 23:2537–50. doi: 10.1101/gad.1817109

PubMed Abstract | CrossRef Full Text | Google Scholar

45. Amen T, Kaganovich D. Quantitative photoconversion analysis of internal molecular dynamics in stress granules and other membraneless organelles in live cells. STAR Protoc (2020) 1:100217. doi: 10.1016/j.xpro.2020.100217

PubMed Abstract | CrossRef Full Text | Google Scholar

46. Wells SE, Hillner PE, Vale RD, Sachs AB. Circularization of mRNA by eukaryotic translation initiation factors. Mol Cell (1998) 2:135–40. doi: 10.1016/s1097-2765(00)80122-7

PubMed Abstract | CrossRef Full Text | Google Scholar

47. Christensen AK, Kahn LE, Bourne CM. Circular polysomes predominate on the rough endoplasmic reticulum of somatotropes and mammotropes in the rat anterior pituitary. Am J Anat (1987) 178:1–10. doi: 10.1002/aja.1001780102

PubMed Abstract | CrossRef Full Text | Google Scholar

48. Amrani N, Ghosh S, Mangus DA, Jacobson A. Translation factors promote the formation of two states of the closed-loop mRNP. Nature (2008) 453:1276–80. doi: 10.1038/nature06974

PubMed Abstract | CrossRef Full Text | Google Scholar

49. Thompson MK, Gilbert WV. mRNA length-sensing in eukaryotic translation: reconsidering the “closed loop” and its implications for translational control. Curr Genet (2017) 63:613–20. doi: 10.1007/s00294-016-0674-3

PubMed Abstract | CrossRef Full Text | Google Scholar

50. Rissland OS, Subtelny AO, Wang M, Lugowski A, Nicholson B, Laver JD, et al. The influence of microRNAs and poly(A) tail length on endogenous mRNA-protein complexes. Genome Biol (2017) 18:211. doi: 10.1186/s13059-017-1330-z

PubMed Abstract | CrossRef Full Text | Google Scholar

51. Costello J, Castelli LM, Rowe W, Kershaw CJ, Talavera D, Mohammad-Qureshi SS, et al. Global mRNA selection mechanisms for translation initiation. Genome Biol (2015) 16:10. doi: 10.1186/s13059-014-0559-z

PubMed Abstract | CrossRef Full Text | Google Scholar

52. Adivarahan S, Livingston N, Nicholson B, Rahman S, Wu B, Rissland OS, et al. Spatial organization of single mRNPs at different stages of the gene expression pathway. Mol Cell (2018) 72:727–38.e5. doi: 10.1016/j.molcel.2018.10.010

PubMed Abstract | CrossRef Full Text | Google Scholar

53. Xiang K, Bartel DP. The molecular basis of coupling between poly(A)-tail length and translational efficiency. eLife (2021) 10:e66493. doi: 10.7554/eLife.66493

PubMed Abstract | CrossRef Full Text | Google Scholar

54. Chorghade S, Seimetz J, Emmons R, Yang J, Bresson SM, Lisio MD, et al. Poly(A) tail length regulates PABPC1 expression to tune translation in the heart. eLife (2017) 6:e24139. doi: 10.7554/eLife.24139

PubMed Abstract | CrossRef Full Text | Google Scholar

55. Borman AM, Michel YM, Kean KM. Biochemical characterisation of cap-poly(A) synergy in rabbit reticulocyte lysates: the eIF4G-PABP interaction increases the functional affinity of eIF4E for the capped mRNA 5’-end. Nucleic Acids Res (2000) 28:4068–75. doi: 10.1093/nar/28.21.4068

PubMed Abstract | CrossRef Full Text | Google Scholar

56. Michel YM, Poncet D, Piron M, Kean KM, Borman AM. Cap-Poly(A) synergy in mammalian cell-free extracts. investigation of the requirements for poly(A)-mediated stimulation of translation initiation. J Biol Chem (2000) 275:32268–76. doi: 10.1074/jbc.M004304200

PubMed Abstract | CrossRef Full Text | Google Scholar

57. Kahvejian A, Svitkin YV, Sukarieh R, M’Boutchou M-N, Sonenberg N. Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms. Genes Dev (2005) 19:104–13. doi: 10.1101/gad.1262905

PubMed Abstract | CrossRef Full Text | Google Scholar

58. Haghighat A, Sonenberg N. eIF4G dramatically enhances the binding of eIF4E to the mRNA 5’-cap structure. J Biol Chem (1997) 272:21677–80. doi: 10.1074/jbc.272.35.21677

PubMed Abstract | CrossRef Full Text | Google Scholar

59. Ivanov A, Mikhailova T, Eliseev B, Yeramala L, Sokolova E, Susorov D, et al. PABP enhances release factor recruitment and stop codon recognition during translation termination. Nucleic Acids Res (2016) 44:7766–76. doi: 10.1093/nar/gkw635

PubMed Abstract | CrossRef Full Text | Google Scholar

60. Ivanov PV, Gehring NH, Kunz JB, Hentze MW, Kulozik AE. Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J (2008) 27:736–47. doi: 10.1038/emboj.2008.17

PubMed Abstract | CrossRef Full Text | Google Scholar

61. Zhouravleva G, Frolova L, Le Goff X, Le Guellec R, Inge-Vechtomov S, Kisselev L, et al. Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J (1995) 14:4065–72. doi: 10.1002/j.1460-2075.1995.tb00078.x

PubMed Abstract | CrossRef Full Text | Google Scholar

62. Alkalaeva EZ, Pisarev AV, Frolova LY, Kisselev LL, Pestova TV. In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3. Cell (2006) 125:1125–36. doi: 10.1016/j.cell.2006.04.035

PubMed Abstract | CrossRef Full Text | Google Scholar

63. Brown A, Shao S, Murray J, Hegde RS, Ramakrishnan V. Structural basis for stop codon recognition in eukaryotes. Nature (2015) 524:493–6. doi: 10.1038/nature14896

PubMed Abstract | CrossRef Full Text | Google Scholar

64. Hoshino S, Imai M, Kobayashi T, Uchida N, Katada T. The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3’-Poly(A) tail of mRNA. direct association of erf3/GSPT with polyadenylate-binding protein. J Biol Chem (1999) 274:16677–80. doi: 10.1074/jbc.274.24.16677

PubMed Abstract | CrossRef Full Text | Google Scholar

65. Kong C, Ito K, Walsh MA, Wada M, Liu Y, Kumar S, et al. Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from s. pombe. Mol Cell (2004) 14:233–45. doi: 10.1016/s1097-2765(04)00206-0

PubMed Abstract | CrossRef Full Text | Google Scholar

66. Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler DE, Berninghausen O, et al. Cryoelectron microscopic structures of eukaryotic translation termination complexes containing eRF1-eRF3 or eRF1-ABCE1. Cell Rep (2014) 8:59–65. doi: 10.1016/j.celrep.2014.04.058

PubMed Abstract | CrossRef Full Text | Google Scholar

67. Song H, Mugnier P, Das AK, Webb HM, Evans DR, Tuite MF, et al. The crystal structure of human eukaryotic release factor eRF1–mechanism of stop codon recognition and peptidyl-tRNA hydrolysis. Cell (2000) 100:311–21. doi: 10.1016/s0092-8674(00)80667-4

PubMed Abstract | CrossRef Full Text | Google Scholar

68. Craig AW, Haghighat A, Yu AT, Sonenberg N. Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation. Nature (1998) 392:520–3. doi: 10.1038/33198

PubMed Abstract | CrossRef Full Text | Google Scholar

69. Roy G, De Crescenzo G, Khaleghpour K, Kahvejian A, O’Connor-McCourt M, Sonenberg N. Paip1 interacts with poly(A) binding protein through two independent binding motifs. Mol Cell Biol (2002) 22:3769–82. doi: 10.1128/MCB.22.11.3769-3782.2002

PubMed Abstract | CrossRef Full Text | Google Scholar

70. Khaleghpour K, Kahvejian A, De Crescenzo G, Roy G, Svitkin YV, Imataka H, et al. Dual interactions of the translational repressor Paip2 with poly(A) binding protein. Mol Cell Biol (2001) 21:5200–13. doi: 10.1128/MCB.21.15.5200-5213.2001

PubMed Abstract | CrossRef Full Text | Google Scholar

71. Khaleghpour K, Svitkin YV, Craig AW, DeMaria CT, Deo RC, Burley SK, et al. Translational repression by a novel partner of human poly(A) binding protein, Paip2. Mol Cell (2001) 7:205–16. doi: 10.1016/s1097-2765(01)00168-x

PubMed Abstract | CrossRef Full Text | Google Scholar

72. Hinton TM, Coldwell MJ, Carpenter GA, Morley SJ, Pain VM. Functional analysis of individual binding activities of the scaffold protein eIF4G. J Biol Chem (2007) 282:1695–708. doi: 10.1074/jbc.M602780200

PubMed Abstract | CrossRef Full Text | Google Scholar

73. Mitchell SF, Walker SE, Algire MA, Park E-H, Hinnebusch AG, Lorsch JR. The 5’-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway. Mol Cell (2010) 39:950–62. doi: 10.1016/j.molcel.2010.08.021

PubMed Abstract | CrossRef Full Text | Google Scholar

74. Tarun SZ, Sachs AB. A common function for mRNA 5’ and 3’ ends in translation initiation in yeast. Genes Dev (1995) 9:2997–3007. doi: 10.1101/gad.9.23.2997

PubMed Abstract | CrossRef Full Text | Google Scholar

75. Dölken L, Ruzsics Z, Rädle B, Friedel CC, Zimmer R, Mages J, et al. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA N Y N (2008) 14:1959–72. doi: 10.1261/rna.1136108

CrossRef Full Text | Google Scholar

76. Rabani M, Levin JZ, Fan L, Adiconis X, Raychowdhury R, Garber M, et al. Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. Nat Biotechnol (2011) 29:436–42. doi: 10.1038/nbt.1861

PubMed Abstract | CrossRef Full Text | Google Scholar

77. Liudkovska V, Dziembowski A. Functions and mechanisms of RNA tailing by metazoan terminal nucleotidyltransferases. Wiley Interdiscip Rev RNA (2021) 12:e1622. doi: 10.1002/wrna.1622

PubMed Abstract | CrossRef Full Text | Google Scholar

78. Yu S, Kim VN. A tale of non-canonical tails: gene regulation by post-transcriptional RNA tailing. Nat Rev Mol Cell Biol (2020) 21:542–56. doi: 10.1038/s41580-020-0246-8

PubMed Abstract | CrossRef Full Text | Google Scholar

79. Colgan DF, Manley JL. Mechanism and regulation of mRNA polyadenylation. Genes Dev (1997) 11:2755–66. doi: 10.1101/gad.11.21.2755

PubMed Abstract | CrossRef Full Text | Google Scholar

80. Lim J, Kim D, Lee Y-S, Ha M, Lee M, Yeo J, et al. Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation. Science (2018) 361:701–4. doi: 10.1126/science.aam5794

PubMed Abstract | CrossRef Full Text | Google Scholar

81. Munoz-Tello P, Rajappa L, Coquille S, Thore S. Polyuridylation in eukaryotes: A 3’-end modification regulating RNA life. BioMed Res Int (2015) 2015:968127. doi: 10.1155/2015/968127

PubMed Abstract | CrossRef Full Text | Google Scholar

82. Barreau C, Paillard L, Osborne HB. AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res (2005) 33:7138–50. doi: 10.1093/nar/gki1012

PubMed Abstract | CrossRef Full Text | Google Scholar

83. Ha M, Kim VN. Regulation of microRNA biogenesis. Nat Rev Mol Cell Biol (2014) 15:509–24. doi: 10.1038/nrm3838

PubMed Abstract | CrossRef Full Text | Google Scholar

84. Eisen TJ, Eichhorn SW, Subtelny AO, Lin KS, McGeary SE, Gupta S, et al. The dynamics of cytoplasmic mRNA metabolism. Mol Cell (2020) 77:786–799.e10. doi: 10.1016/j.molcel.2019.12.005

PubMed Abstract | CrossRef Full Text | Google Scholar

85. Norbury CJ. Cytoplasmic RNA: A case of the tail wagging the dog. Nat Rev Mol Cell Biol (2013) 14:643–53. doi: 10.1038/nrm3645

PubMed Abstract | CrossRef Full Text | Google Scholar

86. Shen B, Goodman HM. Uridine addition after microRNA-directed cleavage. Science (2004) 306:997. doi: 10.1126/science.1103521

PubMed Abstract | CrossRef Full Text | Google Scholar

87. Mullen TE, Marzluff WF. Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5’ to 3’ and 3’ to 5’. Genes Dev (2008) 22:50–65. doi: 10.1101/gad.1622708

PubMed Abstract | CrossRef Full Text | Google Scholar

88. Chang H, Lim J, Ha M, Kim VN. TAIL-seq: genome-wide determination of poly(A) tail length and 3’ end modifications. Mol Cell (2014) 53:1044–52. doi: 10.1016/j.molcel.2014.02.007

PubMed Abstract | CrossRef Full Text | Google Scholar

89. Lim J, Ha M, Chang H, Kwon SC, Simanshu DK, Patel DJ, et al. Uridylation by TUT4 and TUT7 marks mRNA for degradation. Cell (2014) 159:1365–76. doi: 10.1016/j.cell.2014.10.055

PubMed Abstract | CrossRef Full Text | Google Scholar

90. Kühn U, Pieler T. Xenopus poly(A) binding protein: functional domains in RNA binding and protein-protein interaction. J Mol Biol (1996) 256:20–30. doi: 10.1006/jmbi.1996.0065

PubMed Abstract | CrossRef Full Text | Google Scholar

91. Sachs AB, Davis RW, Kornberg RD. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol Cell Biol (1987) 7:3268–76. doi: 10.1128/mcb.7.9.3268-3276.1987

PubMed Abstract | CrossRef Full Text | Google Scholar

92. Bousquet-Antonelli C, Deragon J-M. A comprehensive analysis of the la-motif protein superfamily. RNA N Y N (2009) 15:750–64. doi: 10.1261/rna.1478709

CrossRef Full Text | Google Scholar

93. Markert A, Grimm M, Martinez J, Wiesner J, Meyerhans A, Meyuhas O, et al. The la-related protein LARP7 is a component of the 7SK ribonucleoprotein and affects transcription of cellular and viral polymerase II genes. EMBO Rep (2008) 9:569–75. doi: 10.1038/embor.2008.72

PubMed Abstract | CrossRef Full Text | Google Scholar

94. He N, Jahchan NS, Hong E, Li Q, Bayfield MA, Maraia RJ, et al. A la-related protein modulates 7SK snRNP integrity to suppress p-TEFb-dependent transcriptional elongation and tumorigenesis. Mol Cell (2008) 29:588–99. doi: 10.1016/j.molcel.2008.01.003

PubMed Abstract | CrossRef Full Text | Google Scholar

95. Krueger BJ, Jeronimo C, Roy BB, Bouchard A, Barrandon C, Byers SA, et al. LARP7 is a stable component of the 7SK snRNP while p-TEFb, HEXIM1 and hnRNP A1 are reversibly associated. Nucleic Acids Res (2008) 36:2219–29. doi: 10.1093/nar/gkn061

PubMed Abstract | CrossRef Full Text | Google Scholar

96. Mattijssen S, Kozlov G, Fonseca BD, Gehring K, Maraia RJ. LARP1 and LARP4: up close with PABP for mRNA 3’ poly(A) protection and stabilization. RNA Biol (2021) 18:259–74. doi: 10.1080/15476286.2020.1868753

PubMed Abstract | CrossRef Full Text | Google Scholar

97. Cassidy KC, Lahr RM, Kaminsky JC, Mack S, Fonseca BD, Das SR, et al. Capturing the mechanism underlying TOP mRNA binding to LARP1. Struct Lond Engl 1993 (2019) 27:1771–81.e5. doi: 10.1016/j.str.2019.10.006

CrossRef Full Text | Google Scholar

98. Fonseca BD, Zakaria C, Jia J-J, Graber TE, Svitkin Y, Tahmasebi S, et al. La-related protein 1 (LARP1) represses terminal oligopyrimidine (TOP) mRNA translation downstream of mTOR complex 1 (mTORC1). J Biol Chem (2015) 290:15996–6020. doi: 10.1074/jbc.M114.621730

PubMed Abstract | CrossRef Full Text | Google Scholar

99. Mattijssen S, Kozlov G, Gaidamakov S, Ranjan A, Fonseca BD, Gehring K, et al. The isolated la-module of LARP1 mediates 3’ poly(A) protection and mRNA stabilization, dependent on its intrinsic PAM2 binding to PABPC1. RNA Biol (2021) 18:275–89. doi: 10.1080/15476286.2020.1860376

PubMed Abstract | CrossRef Full Text | Google Scholar

100. Lai WS, Carballo E, Strum JR, Kennington EA, Phillips RS, Blackshear PJ. Evidence that tristetraprolin binds to AU-rich elements and promotes the deadenylation and destabilization of tumor necrosis factor alpha mRNA. Mol Cell Biol (1999) 19:4311–23. doi: 10.1128/MCB.19.6.4311

PubMed Abstract | CrossRef Full Text | Google Scholar

101. Sandler H, Kreth J, Timmers HTM, Stoecklin G. Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin. Nucleic Acids Res (2011) 39:4373–86. doi: 10.1093/nar/gkr011

PubMed Abstract | CrossRef Full Text | Google Scholar

102. Barnard DC, Ryan K, Manley JL, Richter JD. Symplekin and xGLD-2 are required for CPEB-mediated cytoplasmic polyadenylation. Cell (2004) 119:641–51. doi: 10.1016/j.cell.2004.10.029

PubMed Abstract | CrossRef Full Text | Google Scholar

103. Wilusz CJ, Wilusz J. Eukaryotic lsm proteins: lessons from bacteria. Nat Struct Mol Biol (2005) 12:1031–6. doi: 10.1038/nsmb1037

PubMed Abstract | CrossRef Full Text | Google Scholar

104. Yokoshi M, Li Q, Yamamoto M, Okada H, Suzuki Y, Kawahara Y. Direct binding of ataxin-2 to distinct elements in 3’ UTRs promotes mRNA stability and protein expression. Mol Cell (2014) 55:186–98. doi: 10.1016/j.molcel.2014.05.022

PubMed Abstract | CrossRef Full Text | Google Scholar

105. Hentze MW, Kulozik AE. A perfect message: RNA surveillance and nonsense-mediated decay. Cell (1999) 96:307–10. doi: 10.1016/s0092-8674(00)80542-5

PubMed Abstract | CrossRef Full Text | Google Scholar

106. Maquat LE. Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nat Rev Mol Cell Biol (2004) 5:89–99. doi: 10.1038/nrm1310

PubMed Abstract | CrossRef Full Text | Google Scholar

107. Behm-Ansmant I, Kashima I, Rehwinkel J, Saulière J, Wittkopp N, Izaurralde E. mRNA quality control: an ancient machinery recognizes and degrades mRNAs with nonsense codons. FEBS Lett (2007) 581:2845–53. doi: 10.1016/j.febslet.2007.05.027

PubMed Abstract | CrossRef Full Text | Google Scholar

108. Chang Y-F, Imam JS, Wilkinson MF. The nonsense-mediated decay RNA surveillance pathway. Annu Rev Biochem (2007) 76:51–74. doi: 10.1146/annurev.biochem.76.050106.093909

PubMed Abstract | CrossRef Full Text | Google Scholar

109. Isken O, Maquat LE. Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev (2007) 21:1833–56. doi: 10.1101/gad.1566807

PubMed Abstract | CrossRef Full Text | Google Scholar

110. Zhang J, Sun X, Qian Y, Maquat LE. Intron function in the nonsense-mediated decay of beta-globin mRNA: indications that pre-mRNA splicing in the nucleus can influence mRNA translation in the cytoplasm. RNA N Y N (1998) 4:801–15. doi: 10.1017/s1355838298971849

CrossRef Full Text | Google Scholar

111. Thermann R, Neu-Yilik G, Deters A, Frede U, Wehr K, Hagemeier C, et al. Binary specification of nonsense codons by splicing and cytoplasmic translation. EMBO J (1998) 17:3484–94. doi: 10.1093/emboj/17.12.3484

PubMed Abstract | CrossRef Full Text | Google Scholar

112. Le Hir H, Izaurralde E, Maquat LE, Moore MJ. The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J (2000) 19:6860–9. doi: 10.1093/emboj/19.24.6860

PubMed Abstract | CrossRef Full Text | Google Scholar

113. Boehm V, Haberman N, Ottens F, Ule J, Gehring NH. 3’ UTR length and messenger ribonucleoprotein composition determine endocleavage efficiencies at termination codons. Cell Rep (2014) 9:555–68. doi: 10.1016/j.celrep.2014.09.012

PubMed Abstract | CrossRef Full Text | Google Scholar

114. Eberle AB, Stalder L, Mathys H, Orozco RZ, Mühlemann O. Posttranscriptional gene regulation by spatial rearrangement of the 3’ untranslated region. PloS Biol (2008) 6:e92. doi: 10.1371/journal.pbio.0060092

PubMed Abstract | CrossRef Full Text | Google Scholar

115. Singh G, Rebbapragada I, Lykke-Andersen J. A competition between stimulators and antagonists of upf complex recruitment governs human nonsense-mediated mRNA decay. PloS Biol (2008) 6:e111. doi: 10.1371/journal.pbio.0060111

PubMed Abstract | CrossRef Full Text | Google Scholar

116. Yepiskoposyan H, Aeschimann F, Nilsson D, Okoniewski M, Mühlemann O. Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA N Y N (2011) 17:2108–18. doi: 10.1261/rna.030247.111

CrossRef Full Text | Google Scholar

117. Kashima I, Yamashita A, Izumi N, Kataoka N, Morishita R, Hoshino S, et al. Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev (2006) 20:355–67. doi: 10.1101/gad.1389006

PubMed Abstract | CrossRef Full Text | Google Scholar

118. Le Hir H, Gatfield D, Izaurralde E, Moore MJ. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J (2001) 20:4987–97. doi: 10.1093/emboj/20.17.4987

PubMed Abstract | CrossRef Full Text | Google Scholar

119. Fatscher T, Gehring NH. Harnessing short poly(A)-binding protein-interacting peptides for the suppression of nonsense-mediated mRNA decay. Sci Rep (2016) 6:37311. doi: 10.1038/srep37311

PubMed Abstract | CrossRef Full Text | Google Scholar

120. Fatscher T, Boehm V, Weiche B, Gehring NH. The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay. RNA N Y N (2014) 20:1579–92. doi: 10.1261/rna.044933.114

CrossRef Full Text | Google Scholar

121. Joncourt R, Eberle AB, Rufener SC, Mühlemann O. Eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay by two genetically separable mechanisms. PloS One (2014) 9:e104391. doi: 10.1371/journal.pone.0104391

PubMed Abstract | CrossRef Full Text | Google Scholar

122. Eulalio A, Huntzinger E, Izaurralde E. Getting to the root of miRNA-mediated gene silencing. Cell (2008) 132:9–14. doi: 10.1016/j.cell.2007.12.024

PubMed Abstract | CrossRef Full Text | Google Scholar

123. Carthew RW, Sontheimer EJ. Origins and mechanisms of miRNAs and siRNAs. Cell (2009) 136:642–55. doi: 10.1016/j.cell.2009.01.035

PubMed Abstract | CrossRef Full Text | Google Scholar

124. Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet (2008) 9:102–14. doi: 10.1038/nrg2290

PubMed Abstract | CrossRef Full Text | Google Scholar

125. Tritschler F, Huntzinger E, Izaurralde E. Role of GW182 proteins and PABPC1 in the miRNA pathway: a sense of déjà vu. Nat Rev Mol Cell Biol (2010) 11:379–84. doi: 10.1038/nrm2885

PubMed Abstract | CrossRef Full Text | Google Scholar

126. Kozlov G, Safaee N, Rosenauer A, Gehring K. Structural basis of binding of p-body-associated proteins GW182 and ataxin-2 by the Mlle domain of poly(A)-binding protein. J Biol Chem (2010) 285:13599–606. doi: 10.1074/jbc.M109.089540

PubMed Abstract | CrossRef Full Text | Google Scholar

127. Zekri L, Huntzinger E, Heimstädt S, Izaurralde E. The silencing domain of GW182 interacts with PABPC1 to promote translational repression and degradation of microRNA targets and is required for target release. Mol Cell Biol (2009) 29:6220–31. doi: 10.1128/MCB.01081-09

PubMed Abstract | CrossRef Full Text | Google Scholar

128. Huntzinger E, Braun JE, Heimstädt S, Zekri L, Izaurralde E. Two PABPC1-binding sites in GW182 proteins promote miRNA-mediated gene silencing. EMBO J (2010) 29:4146–60. doi: 10.1038/emboj.2010.274

PubMed Abstract | CrossRef Full Text | Google Scholar

129. Yao B, Li S, Jung HM, Lian SL, Abadal GX, Han F, et al. Divergent GW182 functional domains in the regulation of translational silencing. Nucleic Acids Res (2011) 39:2534–47. doi: 10.1093/nar/gkq1099

PubMed Abstract | CrossRef Full Text | Google Scholar

130. Bouillier C, Cosentino G, Léger T, Rincheval V, Richard C-A, Desquesnes A, et al. The interactome analysis of the respiratory syncytial virus protein M2-1 suggests a new role in viral mRNA metabolism post-transcription. Sci Rep (2019) 9:15258. doi: 10.1038/s41598-019-51746-0

PubMed Abstract | CrossRef Full Text | Google Scholar

131. Suzuki Y, Chin WX, Han Q, Ichiyama K, Lee CH, Eyo ZW, et al. Characterization of RyDEN (C19orf66) as an interferon-stimulated cellular inhibitor against dengue virus replication. PloS Pathog (2016) 12:4987–97. doi: 10.1371/journal.ppat.1005357

CrossRef Full Text | Google Scholar

132. McKinney C, Yu D, Mohr I. A new role for the cellular PABP repressor Paip2 as an innate restriction factor capable of limiting productive cytomegalovirus replication. Genes Dev (2013) 27:1809–20. doi: 10.1101/gad.221341.113

PubMed Abstract | CrossRef Full Text | Google Scholar

133. Hk K, Im S XJ, Bd G, Sa L. Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs. RNA N Y N (2016) 22:e92. doi: 10.1261/rna.053447.115

CrossRef Full Text | Google Scholar

134. When Poly(A) binding proteins meet viral infections, including SARS-CoV-2 - PMC. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006897/ (Accessed July 20, 2022).

Google Scholar

135. Harb M, Becker MM, Vitour D, Baron CH, Vende P, Brown SC, et al. Nuclear localization of cytoplasmic poly(A)-binding protein upon rotavirus infection involves the interaction of NSP3 with eIF4G and RoXaN. J Virol (2008) 82:11283–93. doi: 10.1128/JVI.00872-08

PubMed Abstract | CrossRef Full Text | Google Scholar

136. Wise EL, Samolej J, Elliott G. Herpes simplex virus 1 expressing GFP-tagged virion host shutoff (vhs) protein uncouples the activities of RNA degradation and differential nuclear retention of the virus transcriptome. J Virol (2022) 132, e0192621. doi: 10.1128/jvi.01926-21

CrossRef Full Text | Google Scholar

137. Borah S, Nichols LA, Hassman LM, Kedes DH, Steitz JA. Tracking expression and subcellular localization of RNA and protein species using high-throughput single cell imaging flow cytometry. RNA N Y N (2012) 18:1573–9. doi: 10.1261/rna.033126.112

CrossRef Full Text | Google Scholar

138. Borah S, Darricarrère N, Darnell A, Myoung J, Steitz JA. A viral nuclear noncoding RNA binds re-localized poly(A) binding protein and is required for late KSHV gene expression. PloS Pathog (2011) 7:e1002300. doi: 10.1371/journal.ppat.1002300

PubMed Abstract | CrossRef Full Text | Google Scholar

139. Alvarado-Hernandez B, Ma Y, Sharma NR, Majerciak V, Lobanov A, Cam M, et al. Protein-RNA interactome analysis reveals wide association of kaposi’s sarcoma-associated herpesvirus ORF57 with host noncoding RNAs and polysomes. J Virol (2022) 96:e0178221. doi: 10.1128/JVI.01782-21

PubMed Abstract | CrossRef Full Text | Google Scholar

140. Tian B, Manley JL. Alternative cleavage and polyadenylation: the long and short of it. Trends Biochem Sci (2013) 38:13599–13606. doi: 10.1016/j.tibs.2013.03.005

CrossRef Full Text | Google Scholar

141. Tw N, Br G. Expansion of the eukaryotic proteome by alternative splicing. Nature (2010) 463:6220–6231. doi: 10.1038/nature08909

CrossRef Full Text | Google Scholar

142. Peng M, Ren J, Jing Y, Jiang X, Xiao Q, Huang J, et al. Tumour-derived small extracellular vesicles suppress CD8+ T cell immune function by inhibiting SLC6A8-mediated creatine import in NPM1-mutated acute myeloid leukaemia. J Extracell Vesicles (2021) 10:e12168. doi: 10.1002/jev2.12168

PubMed Abstract | CrossRef Full Text | Google Scholar

143. Moore MJ, Proudfoot NJ. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell (2009) 136:688–700. doi: 10.1016/j.cell.2009.02.001

PubMed Abstract | CrossRef Full Text | Google Scholar

144. Fu Y, Sun Y, Li Y, Li J, Rao X, Chen C, et al. Differential genome-wide profiling of tandem 3’ UTRs among human breast cancer and normal cells by high-throughput sequencing. Genome Res (2011) 21:741–7. doi: 10.1101/gr.115295.110

PubMed Abstract | CrossRef Full Text | Google Scholar

145. Shepard PJ, Choi E-A, Lu J, Flanagan LA, Hertel KJ, Shi Y. Complex and dynamic landscape of RNA polyadenylation revealed by PAS-seq. RNA N Y N (2011) 17:761–72. doi: 10.1261/rna.2581711

CrossRef Full Text | Google Scholar

146. Li W, You B, Hoque M, Zheng D, Luo W, Ji Z, et al. Systematic profiling of poly(A)+ transcripts modulated by core 3’ end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation. PloS Genet (2015) 11:e1005166. doi: 10.1371/journal.pgen.1005166

PubMed Abstract | CrossRef Full Text | Google Scholar

147. Early P, Rogers J, Davis M, Calame K, Bond M, Wall R, et al. Two mRNAs can be produced from a single immunoglobulin mu gene by alternative RNA processing pathways. Cell (1980) 20:313–9. doi: 10.1016/0092-8674(80)90617-0

PubMed Abstract | CrossRef Full Text | Google Scholar

148. Alt FW, Bothwell AL, Knapp M, Siden E, Mather E, Koshland M, et al. Synthesis of secreted and membrane-bound immunoglobulin mu heavy chains is directed by mRNAs that differ at their 3’ ends. Cell (1980) 20:293–301. doi: 10.1016/0092-8674(80)90615-7

PubMed Abstract | CrossRef Full Text | Google Scholar

149. Peng Y, Yuan J, Zhang Z, Chang X. Cytoplasmic poly(A)-binding protein 1 (PABPC1) interacts with the RNA-binding protein hnRNPLL and thereby regulates immunoglobulin secretion in plasma cells. J Biol Chem (2017) 292:12285–95. doi: 10.1074/jbc.M117.794834

PubMed Abstract | CrossRef Full Text | Google Scholar

150. Wise EL, Samolej J, Elliot G. Hepatocellular carcinoma. Nat Rev Dis Primer (2021) 7:7. doi: 10.1038/s41572-021-00245-6

CrossRef Full Text | Google Scholar

151. Gerbes A, Zoulim F, Tilg H, Dufour J-F, Bruix J, Paradis V, et al. Gut roundtable meeting paper: selected recent advances in hepatocellular carcinoma. Gut (2018) 67:380–8. doi: 10.1136/gutjnl-2017-315068

PubMed Abstract | CrossRef Full Text | Google Scholar

152. Dhir M, Melin AA, Douaiher J, Lin C, Zhen WK, Hussain SM, et al. A review and update of treatment options and controversies in the management of hepatocellular carcinoma. Ann Surg (2016) 263:1112–25. doi: 10.1097/SLA.0000000000001556

PubMed Abstract | CrossRef Full Text | Google Scholar

153. Zhu Y, Xu D, Zhang Z, Dong J, Zhou Y, Zhang W-W, et al. A new laboratory-based algorithm to predict microvascular invasion and survival in patients with hepatocellular carcinoma. Int J Surg Lond Engl (2018) 57:45–53. doi: 10.1016/j.ijsu.2018.07.011

CrossRef Full Text | Google Scholar

154. Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet (2009) 10:155–9. doi: 10.1038/nrg2521

PubMed Abstract | CrossRef Full Text | Google Scholar

155. Gibb EA, Brown CJ, Lam WL. The functional role of long non-coding RNA in human carcinomas. Mol Cancer (2011) 10:38. doi: 10.1186/1476-4598-10-38

PubMed Abstract | CrossRef Full Text | Google Scholar

156. Fatima R, Akhade VS, Pal D, Rao SM. Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets. Mol Cell Ther (2015) 3:5. doi: 10.1186/s40591-015-0042-6

PubMed Abstract | CrossRef Full Text | Google Scholar

157. Booy EP, Gussakovsky D, Choi T, McKenna SA. The noncoding RNA BC200 associates with polysomes to positively regulate mRNA translation in tumor cells. J Biol Chem (2021) 296:100036. doi: 10.1074/jbc.RA120.015775

PubMed Abstract | CrossRef Full Text | Google Scholar

158. Tan J, Xie Y, Yao A, Qin Y, Li L, Shen L, et al. Long noncoding RNA-dependent regulation of vascular smooth muscle cell proliferation and migration in hypertension. Int J Biochem Cell Biol (2020) 118:105653. doi: 10.1016/j.biocel.2019.105653

PubMed Abstract | CrossRef Full Text | Google Scholar

159. Zhang Y-T, Feng L-H, Zhong X-D, Wang L-Z, Chang J. Single-agent cisplatin treatment of children with high-risk hepatoblastoma. J Pediatr Hematol Oncol (2014) 36:271–5. doi: 10.1097/MPH.0000000000000072

PubMed Abstract | CrossRef Full Text | Google Scholar

160. Czauderna P, Lopez-Terrada D, Hiyama E, Häberle B, Malogolowkin MH, Meyers RL. Hepatoblastoma state of the art: pathology, genetics, risk stratification, and chemotherapy. Curr Opin Pediatr (2014) 26:19–28. doi: 10.1097/MOP.0000000000000046

PubMed Abstract | CrossRef Full Text | Google Scholar

161. Marin JJG, Cives-Losada C, Asensio M, Lozano E, Briz O, Macias RIR. Mechanisms of anticancer drug resistance in hepatoblastoma. Cancers (2019) 11:407. doi: 10.3390/cancers11030407

PubMed Abstract | CrossRef Full Text | Google Scholar

162. He L, Li H, Wu A, Peng Y, Shu G, Yin G. Functions of N6-methyladenosine and its role in cancer. Mol Cancer (2019) 18:176. doi: 10.1186/s12943-019-1109-9

PubMed Abstract | CrossRef Full Text | Google Scholar

163. Chen X-Y, Zhang J, Zhu J-S. The role of m6A RNA methylation in human cancer. Mol Cancer (2019) 18:103. doi: 10.1186/s12943-019-1033-z

PubMed Abstract | CrossRef Full Text | Google Scholar

164. Du H, Zhao Y, He J, Zhang Y, Xi H, Liu M, et al. YTHDF2 destabilizes m(6)A-containing RNA through direct recruitment of the CCR4-NOT deadenylase complex. Nat Commun (2016) 7:12626. doi: 10.1038/ncomms12626

PubMed Abstract | CrossRef Full Text | Google Scholar

165. Deng X, Su R, Weng H, Huang H, Li Z, Chen J. RNA N6-methyladenosine modification in cancers: current status and perspectives. Cell Res (2018) 28:507–17. doi: 10.1038/s41422-018-0034-6

PubMed Abstract | CrossRef Full Text | Google Scholar

166. Kashyap MK, Abdel-Rahman O. Expression, regulation and targeting of receptor tyrosine kinases in esophageal squamous cell carcinoma. Mol Cancer (2018) 17:54. doi: 10.1186/s12943-018-0790-4

PubMed Abstract | CrossRef Full Text | Google Scholar

167. Zhang Y, Chen C, Liu Z, Guo H, Lu W, Hu W, et al. PABPC1-induced stabilization of IFI27 mRNA promotes angiogenesis and malignant progression in esophageal squamous cell carcinoma through exosomal miRNA-21-5p. J Exp Clin Cancer Res CR (2022) 41:111. doi: 10.1186/s13046-022-02339-9

CrossRef Full Text | Google Scholar

168. Chiang K-C, Huang S-T, Wu R-C, Huang S-C, Yeh T-S, Chen M-H, et al. Interferon α-inducible protein 27 is an oncogene and highly expressed in cholangiocarcinoma patients with poor survival. Cancer Manag Res (2019) 11:1893–905. doi: 10.2147/CMAR.S196485

PubMed Abstract | CrossRef Full Text | Google Scholar

169. Suomela S, Cao L, Bowcock A, Saarialho-Kere U. Interferon alpha-inducible protein 27 (IFI27) is upregulated in psoriatic skin and certain epithelial cancers. J Invest Dermatol (2004) 122:717–21. doi: 10.1111/j.0022-202X.2004.22322.x

PubMed Abstract | CrossRef Full Text | Google Scholar

170. Wang H, Qiu X, Lin S, Chen X, Wang T, Liao T. Knockdown of IFI27 inhibits cell proliferation and invasion in oral squamous cell carcinoma. World J Surg Oncol (2018) 16:64. doi: 10.1186/s12957-018-1371-0

PubMed Abstract | CrossRef Full Text | Google Scholar

171. Morton DJ, Kuiper EG, Jones SK, Leung SW, Corbett AH, Fasken MB. The RNA exosome and RNA exosome-linked disease. RNA N Y N (2018) 24:127–42. doi: 10.1261/rna.064626.117

CrossRef Full Text | Google Scholar

172. Zhang W, Zhu J, He X, Liu X, Li J, Li W, et al. Exosome complex genes mediate RNA degradation and predict survival in mantle cell lymphoma. Oncol Lett (2019) 18:5119–28. doi: 10.3892/ol.2019.10850

PubMed Abstract | CrossRef Full Text | Google Scholar

173. Coombs CC, Tallman MS, Levine RL. Molecular therapy for acute myeloid leukaemia. Nat Rev Clin Oncol (2016) 13:305–18. doi: 10.1038/nrclinonc.2015.210

PubMed Abstract | CrossRef Full Text | Google Scholar

174. Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, et al. The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nat Commun (2019) 10:5351. doi: 10.1038/s41467-019-13259-2

PubMed Abstract | CrossRef Full Text | Google Scholar

175. Zou Q, Tan S, Yang Z, Zhan Q, Jin H, Xian J, et al. NPM1 mutant mediated PML delocalization and stabilization enhances autophagy and cell survival in leukemic cells. Theranostics (2017) 7:2289–304. doi: 10.7150/thno.19439

PubMed Abstract | CrossRef Full Text | Google Scholar

176. Goebeler M-E, Bargou RC. T Cell-engaging therapies - BiTEs and beyond. Nat Rev Clin Oncol (2020) 17:418–34. doi: 10.1038/s41571-020-0347-5

PubMed Abstract | CrossRef Full Text | Google Scholar

177. Dumauthioz N, Tschumi B, Wenes M, Marti B, Wang H, Franco F, et al. Enforced PGC-1α expression promotes CD8 T cell fitness, memory formation and antitumor immunity. Cell Mol Immunol (2021) 18:1761–71. doi: 10.1038/s41423-020-0365-3

PubMed Abstract | CrossRef Full Text | Google Scholar

178. Stevens BM, Khan N, D’Alessandro A, Nemkov T, Winters A, Jones CL, et al. Characterization and targeting of malignant stem cells in patients with advanced myelodysplastic syndromes. Nat Commun (2018) 9:3694. doi: 10.1038/s41467-018-05984-x

PubMed Abstract | CrossRef Full Text | Google Scholar

179. Rosace D, López J, Blanco S. Emerging roles of novel small non-coding regulatory RNAs in immunity and cancer. RNA Biol (2020) 17:1196–213. doi: 10.1080/15476286.2020.1737442

PubMed Abstract | CrossRef Full Text | Google Scholar

180. Pelletier J, Graff J, Ruggero D, Sonenberg N. Targeting the eIF4F translation initiation complex: a critical nexus for cancer development. Cancer Res (2015) 75:250–63. doi: 10.1158/0008-5472.CAN-14-2789

PubMed Abstract | CrossRef Full Text | Google Scholar

181. Guzzi N, Muthukumar S, Cieśla M, Todisco G, Ngoc PCT, Madej M, et al. Pseudouridine-modified tRNA fragments repress aberrant protein synthesis and predict leukaemic progression in myelodysplastic syndrome. Nat Cell Biol (2022) 24:299–306. doi: 10.1038/s41556-022-00852-9

PubMed Abstract | CrossRef Full Text | Google Scholar

182. Campbell JD, Alexandrov A, Kim J, Wala J, Berger AH, Pedamallu CS, et al. Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas. Nat Genet (2016) 48:607–16. doi: 10.1038/ng.3564

PubMed Abstract | CrossRef Full Text | Google Scholar

183. Li K, Zheng X, Tang H, Zang Y-S, Zeng C, Liu X, et al. E3 ligase MKRN3 is a tumor suppressor regulating PABPC1 ubiquitination in non-small cell lung cancer. J Exp Med (2021) 218:e20210151. doi: 10.1084/jem.20210151

PubMed Abstract | CrossRef Full Text | Google Scholar

184. Li C, Han T, Li Q, Zhang M, Guo R, Yang Y, et al. MKRN3-mediated ubiquitination of Poly(A)-binding proteins modulates the stability and translation of GNRH1 mRNA in mammalian puberty. Nucleic Acids Res (2021) 49:3796–813. doi: 10.1093/nar/gkab155

PubMed Abstract | CrossRef Full Text | Google Scholar

185. Eisermann K, Dar JA, Dong J, Wang D, Masoodi KZ, Wang Z. Poly (A) binding protein cytoplasmic 1 is a novel Co-regulator of the androgen receptor. PloS One (2015) 10:e0128495. doi: 10.1371/journal.pone.0128495

PubMed Abstract | CrossRef Full Text | Google Scholar

186. Wu X-S, Wang F, Li H-F, Hu Y-P, Jiang L, Zhang F, et al. LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis. EMBO Rep (2017) 18:1837–53. doi: 10.15252/embr.201744147

PubMed Abstract | CrossRef Full Text | Google Scholar

187. Graetz D, Crews KR, Azzato EM, Singh RK, Raimondi S, Mason J, et al. Leukemic presentation of ALK-positive anaplastic large cell lymphoma with a novel partner, poly(A) binding protein cytoplasmic 1 (PABPC1), responding to single-agent crizotinib. Haematologica (2019) 104:e218–21. doi: 10.3324/haematol.2018.215103

PubMed Abstract | CrossRef Full Text | Google Scholar

188. Yu C, Yu J, Yao X, Wu WKK, Lu Y, Tang S, et al. Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing. Cell Res (2014) 24:701–12. doi: 10.1038/cr.2014.43

PubMed Abstract | CrossRef Full Text | Google Scholar

189. Wu Y-Q, Ju C-L, Wang B-J, Wang R-G. PABPC1L depletion inhibits proliferation and migration via blockage of AKT pathway in human colorectal cancer cells. Oncol Lett (2019) 17:3439–45. doi: 10.3892/ol.2019.9999

PubMed Abstract | CrossRef Full Text | Google Scholar

190. Comtesse N, Keller A, Diesinger I, Bauer C, Kayser K, Huwer H, et al. Frequent overexpression of the genes FXR1, CLAPM1 and EIF4G located on amplicon 3q26-27 in squamous cell carcinoma of the lung. Int J Cancer (2007) 120:2538–44. doi: 10.1002/ijc.22585

PubMed Abstract | CrossRef Full Text | Google Scholar

191. Zhu J, Ding H, Wang X, Lu Q. PABPC1 exerts carcinogenesis in gastric carcinoma by targeting miR-34c. Int J Clin Exp Pathol (2015) 8:3794–802. doi: 10.1038/nrclinonc.2015.210

PubMed Abstract | CrossRef Full Text | Google Scholar

192. Ohshima K, Kanto K, Hatakeyama K, Ide T, Wakabayashi-Nakao K, Watanabe Y, et al. Exosome-mediated extracellular release of polyadenylate-binding protein 1 in human metastatic duodenal cancer cells. Proteomics (2014) 14:2297–306. doi: 10.1002/pmic.201300477

PubMed Abstract | CrossRef Full Text | Google Scholar

Keywords: cytoplasmic poly-A binding protein (PABPC1), cancer development, tumor progression, mRNA translation, mRNA stability, oncogene

Citation: Qi Y, Wang M and Jiang Q (2022) PABPC1——mRNA stability, protein translation and tumorigenesis. Front. Oncol. 12:1025291. doi: 10.3389/fonc.2022.1025291

Received: 22 August 2022; Accepted: 08 November 2022;
Published: 01 December 2022.

Edited by:

John G. Clohessy, Beth Israel Deaconess Medical Center and Harvard Medical School, United States

Reviewed by:

Shan Lei, Guizhou Medical University, China
Matthew Brook, University of Edinburgh, United Kingdom

Copyright © 2022 Qi, Wang and Jiang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Min Wang, d20yMXN0QDEyNi5jb20=

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.