Na Fang1
Chao Liu
Lu Lv
Yi-Jun Shi- 1Department of Oncology, The Affiliated People’s Hospital, Jiangsu University, Zhenjiang, China
- 2Department of Thoracic and Cardiovascular Surgery, The Affiliated People’s Hospital, Jiangsu University, Zhenjiang, China
- 3Department of Respiratory, The Affiliated People’s Hospital, Jiangsu University, Zhenjiang, China
circular RNA (circRNA) is a closed ring structure formed by cyclic covalent bonds connecting the 5’-end and 3’-end of pre-mRNA. circRNA is widely distributed in eukaryotic cells. Recent studies have shown that circRNA is involved in the pathogenesis and development of multiple types of diseases, including tumors. circRNA is specifically expressed in tissues. And the stability of circRNA is higher than that of linear RNA, which can play biological roles through sponge adsorption of miRNA, interaction with RNA binding protein, regulation of gene transcription, the mRNA and protein translation brake, and translation of protein and peptides. These characteristics render circRNAs as biomarkers and therapeutic targets of tumors. Gastrointestinal tumors are common malignancies worldwide, which seriously threaten human health. In this review, we summarize the generation and biological characteristics of circRNA, molecular regulation mechanism and related effects of circRNA in gastrointestinal tumors.
Introduction
Gastrointestinal tumors such as gastric cancer, esophageal cancer, colorectal cancer, pancreatic cancer, hepatocellular carcinoma and gallbladder cancer are common malignancies worldwide, which seriously threaten human health. The occurrence and progression of carcinomas are related to multiple factors. It is reported that circRNAs are associated with cancers, including gastrointestinal cancers (1–4).
circular RNA (circRNA) is a type of long non-coding RNA. In 1976, Sanger et al. found that the pathogenic plant virus was a single-stranded covalently closed circRNA molecule, but scientists considered that it was connected by host cell enzymes rather than formed by reverse splicing (5). circRNA formed by reverse splicing was first reported in the 1890s (6–9). However, only a few circRNAs were discovered at that time due to technical limitations. Until the 21st century, with the vigorous development of second-generation sequencing (NGS) technology and bioinformatics, it is gradually realized that circRNA is a type of non-coding RNA with prevalent distribution in nature as well as abundant and diverse expression (10). This renders a more intensive understanding of circRNA and in-depth researches on its formation process and mechanism.
Generation of circRNA
circRNA is formed by reverse splicing of pre-mRNA, and the same pre-mRNA can generate multiple circRNAs with different compositions due to the difference of splicing sites (11). The generated circRNA can be classified into three types according to the different composition: intronic circRNA (ciRNA) formed by intron cyclization (Figure 1A) (12), and exon-intro circRNA (EIciRNA) formed by exon and intron cyclization (Figure 1B) (13), and exonic circRNA (ecircRNA) formed by exon cyclization (Figures 1C–F) (14), among which exon circRNA is the most common. Most human endogenous circRNA contains multiple exons, with two or three exons as the most common. Each exon generally contains 112 to 130 nucleotides. There is also single exon formed by reverse splicing, which generally requires a median exon length of 353 nucleotides (15).
Figure 1 Different splicing sites and compositions form different circRNAs. (A) The splicing sites of pre-mRNA during the formation of intron circRNA (ciRNA) by intron circularization. (B) The splicing sites of pre-mRNA during exon and intron cyclization to form exon-intro circRNA (EIciRNA). (C-F) The splicing sites of pre-mRNA in the process exon cyclization to form exonic circRNA (ecircRNA).
Regardless of the splicing method, circRNA is formed by reverse splicing via spliceosome on the downstream 5’-splicing site and upstream 3’-splicing site of pre-mRNA and subsequent formation of 3’,5’-phosphodiester bond as well as cyclization (16). The formation modes of circRNA include intronic complementary sequence (ICS) pair-driven cyclization, RNA binding protein (RBP)-driven cyclization and lariat-driven cyclization (17). First of all, ICS of pre-mRNA can make the distal intron splicing sites closer in space to promote reverse splicing (Figures 2A, B) (18). Secondly, RBP can regulate the formation of circRNA by combining with ICS (Figures 2C, D). RBP usually contains a double-stranded RNA binding domain (dsRBD), and dsRBD can bind and pair with ICS. Nuclear factor 90 (NF90) and nuclear factor 110 (NF110) encoded by the ILF3 gene both contain dsRBD, which can promote the formation of circRNA by directly binding to the intronic reverse repeat Alu element (19, 20). ICS of SEPT9 can bind to EIF4A3 to increase the production of circSEPT9 (21). Quaking binds to ICS to make the splice site closer to facilitate reverse splicing to increase circRNAs formation (22). Thirdly, in the exon skipping event, the exon lariat formed by the covalently combined splice acceptor and splice donor provided by the exon is another formation of circRNA (Figure 2E) (23). Additionally, the formation of intron lariat caused by intron removal during the pre-mRNA splicing process can give rise to circRNA (Figure 2F) (12).
Figure 2 The formation modes of circRNA. (A, B) CircRNAs with intronic complementary sequence (ICS) of pre-mRNA can make the distal intron splicing sites closer in space to promote reverse splicing and ICS pair-driven cyclization. (C, D) CircRNAs with double-stranded RNA binding domain (dsRBD) can bind and pair with ICS to make the splice site closer, as well as facilitate reverse splicing to increase circRNAs formation. (E) In the exon skipping event, the exon lariat formed by the covalently combined splice acceptor and splice donor provided by the exon. (F) Intronic lariat-driven cyclization was caused by intron removal during the pre-mRNA splicing process.
Then, what are the factors affecting the formation of circRNA? Firstly, polymerase II plays an important role in reverse splicing. Analysis of the transcription elongation rate of human cellular polymerase II showed that the average transcription elongation rate of genes that can produce circRNA is higher than that of genes that cannot produce circRNA. The high transcription elongation rate renders transcription of more downstream genes and increases ICS matching that skipps exon, therefore, reverse splicing is more likely to form circRNA (10). After depletion cleavage/polyadenylation terminates the inhibitory effect of RNA polymerase II, the level of circRNA also increases (24). Moreover, reverse splicing and canonical splicing are in a competitive relationship. When the canonical splicing speed becomes slow or the splicing complex is consumed, the level of circRNA would increase, which is associated with the transformation from canonical splicing to reverse splicing (25).
Detection Method and Research Technology of circRNA
RNA sequencing and gene chip technology have relatively good sensitivity analysis and quantitative accuracy of circRNA detection, however, with expensive cost. Northern blot and reverse transcription polymerase chain reaction are also simple and effective methods to detect circRNA, however, with relatively low sensitivity analysis and quantitative accuracy. Quantitative reverse transcription polymerase chain reaction can be performed if rapid and accurate detection of the relative expression abundance of circRNA is required, whose sensitivity analysis and quantitative accuracy are better, and the cost is relatively low. The sensitivity analysis and quantitative accuracy of droplet digital PCR and NanoString Technologies nCounter assays to detect circRNA are extremely good, however, they are rarely used due to special equipment and relatively expensive cost (26).
Two-dimensional denaturing polyacrylamide gel electrophoresis can be used to assess whether RNA is circular (27). The cellular localization of circRNA requires FISH technology (13) and nuclear and cytoplasmic separation (14). Bioinformatics analysis and RNA-seq can be used to predict and to analyze the interaction between circRNA and miRNA. Bioinformatics analysis and identification of RNA pulldown and mass spectrometry can be used to predict and to analyze the interaction between circRNA and other proteins. RNA immunoprecipitation related assays and dual luciferase reporter gene assay can be used to validate their interaction.
Biological Characteristics of circRNA
In recent years, the continuous in-depth studies of circRNA have been revealed diverse noteworthy characteristics of circRNA.
Stability of circRNA
circRNA has a closed loop structure with 3’,5’-phosphodiester bonds, without 5’˜3’ polarity or poly A tail, which makes them more stable than linear RNA and not easily degraded by RNase R (28). In addition, during viral infection, circRNA is almost completely degraded by RNase L (29). The ribonuclease complex RNase P/MRP can degrade m6A-modified circRNA through the m6A reader protein YTHDF2 and HRSP12 (30). Another study has found that the combination of AGO2 protein and miRNA can mediate the degradation of circRNA. CDR1as contains miR-671 binding sites, and their binding can mediate the degradation of CDR1as by AGO2 (31). Meanwhile, miR-7 can also promote the degradation of circRNA by recruiting miR-671 (32). AGO2 can also mediate the degradation of circFilip11 by miRNA-1224 (33). Moreover, circRNA can also enter exosomes or extracellular vesicles, which can be eliminated by the export of active substances (34). Overall, circRNA is more stable than linear RNA, with an average half-life of 18.8-23.7 h, while the average half-life of homologous linear RNA is only 4.0-7.4 h (35).
Localization of Characteristics of circRNA
ciRNA and EIciRNA are mainly distributed in the nucleus of eukaryotes, and ecircRNA is mainly distributed in the cytoplasm (12–14). Partially-length circRNA could be transported from the nucleus to the cytoplasm, and different species have different requirements for the length of circRNA from the nucleus to the cytoplasm (36). In drosophila and human cells, Hel25E protein family is a key regulator that mediates the transport of circRNA from the nucleus to the cytoplasm. The ATP-dependent RNA helicase Hel25E (also known as WM6) in drosophila melanogaster mediates the export of long-chain circRNA with over 800 nucleotides in length. The homologous protein UAP56 (DDX39B) of Hel25E in human cell mainly mediates the nuclear export of long-chain circRNA with over 1300 nucleotides in length, while URH49 (DDX39A) mainly mediates the nuclear export of short-chain circRNA with less than 500 nucleotides in length. The amino acid sequence differences of the Hel25E protein family lead to its recognition of circRNA molecules of different sizes (37). YTHDC1 can regulate the nuclear export of m6A-modified mRNA (38). Chen et al. found that m6A-modified circNSUN2 can bind to YTHDC1 to promote the nuclear export of circNSUN2 (39).
Type and Expression Abundance of circRNA
High-throughput sequencing analysis has revealed the expression of multiple types of circRNA in fungi, protists, plants, worms, fish, insects and mammals (40–45). By identifying the transcriptomes of normal tissues and tumor tissues of humans and other animals, Zhao et al. identified most of the full-length sequences of circRNAs, and compiled the circRNA database (circAtlas) (46). The circAtlas database presently contains circRNAs from homo sapiens, macaca mulatta, mus musculus, rattus norvegicus, sus scrofa and gallus gallus. There were 421,501 types of circRNAs from 259 human samples, 169618 types of circRNAs from 80 macaque samples, and 175,273 types of circRNAs from 113 mouse samples.
circRNA is abundantly expressed in mammalian brain tissue (47–49), which is also enriched in human red blood cells and platelets (50). Notably, although the efficiency of reverse splicing is not high, the accumulation of circRNA is considerable due to its stability, therefore, the expression level of circRNA can be higher than its homologous linear mRNA. The stable abundance of circRNA is a balanced consequence of circRNA formation, nuclear output and turnover efficiency (10).
circRNA Is Highly Conservative and Expresses Specifically at the Stage of Tissue Development
Despite various types of circRNA, most types of circRNA are extremely conservative in evolution and among different species (51). The conservation of circRNAs among different species indicates that circRNAs are not by-products of precursor mRNA splicing, suggesting circRNA is extremely important in certain biological processes. circRNAs are specifically expressed at the stage of tissue development, and are involved in innate immunity, development of the nervous system, metabolism of hormones in the body, as well as tumorigenesis and tumor progression (52–55).
The Influences of Life Style, Nutrition, Diet, Environment and the Microbiome on circRNAs.
Based on the heterogeneity of disease, molecular pathological characteristics and epidemiological study design method, molecular pathological epidemiology analyzes the impact of molecular level changes caused intrinsic factors and extrinsic factors (such as life style, nutrition, diet, environment and the microbiome) on the occurrence, development, prognosis and outcome of the disease (56, 57). Studies have found that circRNA can be affected by different extrinsic factors. Chemical contamination in the environment is known to cause abnormal circRNA expression through multiple exposure routes (58). Fatty liver may result from excessive triglyceride uptake and production by the liver or by a secretory defect (59). The aberrant expression of circScd1 affects the extent of hepatocellular lipidosis in nonalcoholic fatty liver disease and promotes fatty liver disease via the JAK2/STAT5 pathway (60). Plasmatic circRNA MBOAT2 demonstrated a significantly lowered level 24 h after the marathon (61). CircNF1-419 improves the gut microbiome structure and function in AD-like mice (62). Cancers are complex diseases which are related to the above exogenous factors (63–65). There are also some relationships between circRNAs and exogenous factors in cancers. Gut microbiota regulate tumor metastasis via circRNA/miRNA networks (66). Zhang et al. have found that the expression of circ-DB in plasma exosomes of in hepatocellular carcinoma (HCC) patients with high body fat rate is up-regulated. After being taken up by HCC cells, exosomal circ-DB inhibits the expression level of miR-34a and activates deubiquitination-related USP/Cyclin A2 signaling pathway, thereby promoting the proliferation of HCC and attenuating cell DNA damage (67).
The Mechanism of circRNA in Gastrointestinal (GI) Tumors
In recent years, circRNA has been widely investigated in multiple diseases (68–70), including GI tumors (Tables S1–S7). Despite act as miRNA sponge, circRNAs can function as interaction with RNA binding protein, regulation of gene transcription, the mRNA and protein translation brake, and translation of protein and peptides in GI tumors.
As miRNA Sponge
circRNA can act as miRNA sponge in GI tumors (Figure 3A). circLPAR3 is highly expressed in esophageal squamous cell carcinoma (ESCC) tissues and cells, which can upregulate the expression of c-MET through sponge adsorption of miR-198 to increase the migration and invasion of ESCC (55). circCCDC9, with low expression in gastric cancer tissues and cells, can attenuate the inhibitory effect on the target gene CAV1 after adsorbing miR-6792-3p, thereby inhibiting the proliferation, migration and invasion of gastric cancer cells (71). circCAMSAP1 is highly expressed in colorectal cancer tissues than in normal tissues, and its expression is significantly lower in the plasma of colorectal cancer patients than that before surgery. circCAMSAP1 sponges miR-328-5p to weaken its inhibitory effect on transcription factor E2F1, thereby promoting proliferation of colorectal cancer cells (72). circBFAR, with high expression in pancreatic ductal adenocarcinoma, up-regulates the expression of mesenchymal-epithelial transformation (EMT) through sponge adsorption of miR-34b-5p to phosphorylate Akt at Ser 473, which further activates MET/PI3K/Akt signal transduction pathway to promote the proliferation, migration and invasion of pancreatic ductal adenocarcinoma (73). Circular RNA cSMARCA5 with low expression in HCC tissues and cells, can promote the expression of tumor suppressor gene TIMP3 by sponge adsorption of miR-17-3p and miR-181b-5p to suppress the proliferation and migration of HCC (74).
Figure 3 The mechanism of circRNA in gastrointestinal tumors. (A) CircRNAs can act as miRNA sponge or decoys as well as regulate the function of downstream mRNA. (B) CircRNAs with RNA binding protein (RBP) binding motifs may sponge or decoy the RBPs and regulate their functions. (C) A few circRNAs can combine with several RBPs and function as protein scaffolds to affect the tumor progressions. (D) Some circRNAs are involved in gene transcription regulation by recruiting the transcription regulators to influence promoters. (E, F) CircRNAs containing internal ribosome entry site (IRES) elements and AUG sites may act as templates as well as be translated.
All of the above findings suggest that circRNA can act as a sponge to adsorb one or more miRNAs to subsequently affect the expression of downstream target genes, thereby affecting the biological functions of tumor cells, with potential therapeutic value.
Interaction With RNA Binding Protein (RBP)
circRNA can affect the function of downstream target genes through competitive binding with RBP in GI tumors (Figure 3B) (75). circGSK3β is highly expressed in ESCC, and circGSK3β can bind to GSK3β protein to prevent β-catenin from phosphorylation and degradation, to affect the Wnt/β-catenin pathway, thereby promoting the migration and invasion of ESCC (76). circPTK2 is highly expressed in cancer tissues and serum of patients with colorectal cancer (CRC). To be specific, circPTK2 can affect the phosphorylation and expression level of Vimentin by binding to Ser38, Ser55 and Ser82 of Vimentin, which can promote EMT, inhibit apoptosis and enhance cell proliferation, migration and invasion of CRC cells (77). circAGO2 is significantly elevated in gastric cancer tissues. circAGO2 interacts with human antigen R (HuR) protein to promote the activation and enrichment of 3’-UTR of target genes, to prevent target genes from binding to AGO2, and to decrease the formation of AGO2-miRNA complex, thereby promoting the proliferation, invasion and metastasis of gastric cancer cells (78). circ-FOXP1 is highly expressed in gallbladder cancer (GBC) tissues and cells. By interacting with PTBP1 protein, circ-FOXP1 can protect PKLR mRNA from decay, promote cell proliferation, migration, invasion and inhibit apoptosis of GBC (79).
circRNA can combine with several RBPs to act as a protein scaffold (Figure 3C). In metastatic CRC, m6A-modified circNSUN2 combines with IGF2BP2 protein and HMGA2 protein to form a ternary complex to promote liver metastasis of CRC (39). circMRPS35 is lowly expressed in gastric cancer, and it can serve as a protein scaffold to recruit histone acetyltransferase KAT7 to the promoters of FOXO1 and FOXO3a genes to further cause H4K5 acetylation, which further activate the transcription of FOXO1 and FOXO3a and trigger the expression of their downstream targets (p21, p27, Twist1 and E-cadherin genes), thereby inhibiting the proliferation and invasion of gastric cancer cells (80).
Regulation of Gene Transcription
Li et al. have found that in cervical cancer Hela cells, circEIF3J, circPAIP2 interact with Pol II and U1 snRNP to bind to the parent gene promoter to promote parental gene transcription (13). However, the above regulatory pathway of gene transcription by circRNA has not been reported in GI tumors, while circRNA can regulate gene transcription through other pathways (Figure 3D).
circRHOT1 is highly expressed in HCC tissues and cells. circRHOT1 recruits TIP60 to the NR2F6 promoter and initiates NR2F6 transcription, promotes the expression of NR2F6, and enhances the proliferation, migration and invasion of HCC cells via the NOTCH2 signaling pathway (81). circERBB2 is highly expressed in GBC tissues and is mainly located in the nucleoli of GBC cells. It can bind to PA2G4 to regulate the nuclear localization of PA2G4. The binding of circERBB2 to PA2G4 can regulate the expression of TIFIA to regulate rDNA transcription, thereby promoting the proliferation of GBC cells (82). circ-DONSON is highly expressed in gastric cancer tissues and cells. It can interact with the important subunit SNF2L of the NURF complex, recruit NURF to the SOX4 promoter to initiate its transcription, promote the proliferation, migration and invasion and inhibit apoptosis of gastric cancer cells (83). circITGA7, with low expression in CRC, can increase the expression of NF1, a negative regulator of the Ras1 pathway after sponge adsorption of miR-370-3p, which can inhibit the Ras pathway, decrease the expression of RREB1, promote linear ITGA7 transcription to increase the expression of linear ITGA7, while overexpression of circITGA7 can inhibit the proliferation, migration and invasion of CRC cells (84).
The mRNA and Protein Translation Brake
In GI tumors, a few circRNAs can interfere with the translation of mRNA or protein. circBACH1 is significantly elevated in liver cancer tissues and cells. It can bind to HuR and promote the translocation of HuR from the nucleus to the cytoplasm. In HCC, circBACH1 can enhance the inhibitory effect of HuR on p27 translation and accelerate the cell cycle from G0/G1 phase to S phase, thereby promoting the proliferation of HCC (85). circ-MALAT1 is highly expressed in cancer stem cells (CSCs) of HCC tissues. circ-MALAT1 binds to ribosomes through the internal ribosome entry site (IRES) and binds with PAX5 mRNA through 11 bases to form circ-MALAT1, ribosome and PAX5 mRNA ternary complex, which prevents the translation of PAX5 and promotes the self-renewal of CSCs (86).
Protein or Peptide Translation
Studies have found that endogenous circRNA containing IRES and ribosome binding sites (AUG) has protein coding capacity (87). The translation mechanism of circRNA is different from that of ordinary linear mRNA, and it is initiated by ribosome scanning. Several circRNAs can act as templates for translation in GI tumors (Figures 3E, F). The translation mechanism of circRNA is similar to the cap-independent translation pathway. Studies have shown that m6A modification can drive circRNA translation in a cap-independent manner (88).
circPPP1R12A is highly expressed in gastric cancer tissues and cells. The short 216 nt small open reading frame of circPPP1R12A has the potential to peptide encoding (containing 73 amino acids). The encoded circPPP1R12A-73aa peptide can activate the hippo-YAP signaling pathway and enhance the proliferation, migration and invasion of gastric cancer cells (89). circFNDC3B is lowly expression in colon cancer tissues, and it can encode a new protein circFNDC3B-218aa. circFNDC3B-218aa can decrease the expression of Snail to promote the antitumor effect of FBP1 in colon cancer, to suppress the proliferation, invasion, migration and EMT of colon cancer cells (90). circβ-catenin is highly expressed in HCC tissues, which can encode a 370-amino acid protein (known as β-catenin-370aa). β-catenin-370aa competitively binds to GSK3β to prevent the binding and phosphorylation of GSK3β and β-catenin, thereby antagonizing the GSK3β-induced degradation of β-catenin and activating the Wnt pathway to promote the growth and metastasis of HCC cells (91).
Collectively, circRNA regulates GI tumors through various mechanisms, including miRNA sponge adsorption, interaction with RBP, regulation of gene transcription, the mRNA and protein translation brake, and translation of protein and peptides. These mechanisms are not completely separated, but interactive.
Biological Functions of circRNA in GI Tumors
Regulation of Proliferation, Migration, Invasion and Apoptosis of Tumor as Well as Self-Renewal of CSCs
There are extensive studies concerning the roles of circRNA the regulation of tumor proliferation, migration, invasion and apoptosis. In addition, circRNA can also affect the self-renewal of CSC. circHuR expression is down-regulated in gastric cancer tissues and lines. circHuR interacts with CNBP protein (CCHC-type zinc finger nucleic acid-binding protein) and inhibits the binding of CNBP to the HuR promoter, thereby leading to HuR down-regulation to further inhibit the proliferation, invasion and metastasis of gastric cancer cells (92). circLgr4 is highly expressed in CRC tissues and CSCs, with peptide-coding functions. The peptide encoded by circLgr4 interacts with Lgr4 and is activated by Lgr4, to further promote the activation of Wnt/β-catenin signal, which can promote the invasion of CRC cells and self-renewal of CSCs (93). circZMYM2 is overexpressed in pancreatic cancer tissues and cells. It increases the expression of JMJD2C by binding to miR-335-5p, promotes the proliferation and invasion as well as inhibits apoptosis of pancreatic cancer cells (94). hsa_circ_0016788 is up-regulated in HCC tissues and cell lines. It can increase the expression of CDK4 by binding to miR-486, promote the proliferation and invasion as well as inhibit apoptosis of HCC cells (95). The expression of circ-CCAC1 derived from ERBB2 is increased in cholangiocarcinoma cells. circ-CCAC1 up-regulates the expression of transcription factor YY1 by competitively binding to miR-514a-5p in tumor cells. YY1 promotes its transcription by directly binding to CAMLG promoter, thereby promoting the proliferation, migration and invasion of GBC cells (96).
Regulation of the Radiotherapy and Chemotherapy Response of Tumor Cells
In addition to affecting tumor proliferation and metastasis, circRNA can also affect the sensitivity of tumor cells to radiotherapy and chemotherapy. Then, does circRNA still have this function in GI tumors?
circVRK1 is lowly expressed in ESCC tissues and cells. It can positively regulate PTEN, inhibit the activity of PI3K/AKT signaling pathway, suppress proliferation, migration and EMT of ESCC cells as well as reverse radiation therapy resistance by adsorbing miR-624-3p (97). Has_circ_001680 is highly expressed in CRC tissues. It can induce irinotecan resistance by regulating the miR-340 to affect the target gene BMI1 (98).
The activity of key metabolites of autophagy is associated with the drug resistance of tumors, and circRNA can regulate the drug sensitivity of tumor cells by affecting autophagy (99). circRACGAP1 can sponge miR-3657 and further up-regulate the expression level of ATG7 by competitively inhibiting miR-3657 activity. Both endogenous and exogenous knockdown of circRACGAP1 expression can increase the sensitivity of gastric cancer cells to apatinib by suppressing autophagy, and knockdown of circRACGAP1 can decrease the toxicity of apatinib and enhance its therapeutic effect on gastric cancer (100). circCUL2 is lowly expressed in gastric cancer tissues and cells. circCUL2 can increase the expression of ROCK2 and p62, inhibit the expression of autophagic marker LC3 and Beclin1 by adsorbing miR-142-3p, which can inhibit autophagy and improve cisplatin sensitivity of cisplatin-resistant GC cells (101).
ABC transporter can transport chemotherapeutics to the extracellular compartment, specific organelles and exosomes. Therefore, the drug retention in the cellular vesicles and compartments can increase drug efflux, which reduces the drug concentration to cause chemotherapeutic resistance of tumor (100). circFBXO11 is highly expressed in HCC tissues. It can sponge miR-605 to decrease its inhibition of FOXO3 protein, and increased FOXO3 expression targets the promoter region of ABCB1 to accelerate its expression, thereby increasing the anti-oxaliplatin ability of HCC (102).
Effects on Immune Therapy
Immune function is crucial to tumorigenesis and tumor progression. circRNA can affect immune function. circ_0000977 in pancreatic cancer can adsorb miR-153 to affect the expression of HIF1A and ADAM10 as well as regulate the immune escape of pancreatic cancer cells mediated by HIF1A (103). circMET is highly expressed in HCC. It can affect the expression of Snail/dipeptidyl peptidase 4 (DPP4)/CXCL10, induce EMT, enhance the immunosuppression of the tumor microenvironment and promote HCC progression after adsorbing miR-30-5p (104). The HCC cell-secreted exosomes circUHRF1 can inhibit the function of NK cells, promote the immune escape of HCC cancer, and increase the resistance of anti-PD1 immunotherapy through the miR-449c-5p/TIM-3 pathway, which provide a novel therapeutic approach for HCC patients, that is, targeting circUHRF1 (105).
circRNAs and Tumor Microenvironment in GI Tumors
The tumor microenvironment (TME) consists of extracellular matrix components, endothelial cells, stromal cells, immune cells, vasculature and various signaling entities. TME, nourished by the vasculature, is an indispensable condition for metastatic tumor cell growth. It is important that endothelial cells of the TME which associate with angiogenesis and tumors metastasis. VEGF is the most important regulatory factor in angiogenesis (106). It is a mitogenic factor to promote the proliferation of endothelial cells and angiogenesis. circ_0072088 is overexpressed in ESCC cells and tissues. It can sponge miR-377 to attenuate the inhibitory effect of miR-377 on VEGF expression, which could elevate the expression of VEGF, thereby promoting migration and invasion of ESCC (107). Furthermore, exosomal circ-IARS is overexpressed in pancreatic cancer cells. It can promote the permeability of the vessel wall to accelerate tumor metastasis. The circ-IARS can sponge miR-122 and enhance the activity of Ras homolog gene family, member A (RhoA), which restrains tight junction ligand-protein Zonula occludens-1(ZO-1) and promotes endothelial monolayer permeability, thereby promoting tumor development (108). In conclusion, circRNA may plays a crucial role in the TME.
Exosomal circRNAS in GI Tumors
Exosomes are extracellular vesicles (EV) secreted by most eukaryotic cells and involved in intercellular communication. The components of exosomes include protein, DNA, RNA, etc. After circRNA is exported from exosomes and released in recipient cells, it plays a critical role in regulating tumor growth, metastasis and angiogenesis during tumor development (109). Then, what is the expression and role of exosomal circRNA in GI tumors? The expression of circPAGRAL is significantly up-regulated in CRC cells treated with tumor-derived exosomes, which promotes the proliferation, migration and invasion of CRC cells by modulating the miR-142-3p/miR-506-3p-TGF-β1 axis (110). The high expression of circSHKBP1 in gastric cancer, can be delivered by exosomes and promote the proliferation, migration and invasion of gastric cancer cells in vitro via sponge adsorption of miR-582-3p and binding to HSP90 (111). Exosome-delivered circ_MMP2 in HCC promotes HCC metastasis by up-regulating MMP2 (112). After endothelial cells receive extracellular vesicles (mainly exosomes) carrying circ-CCAC1 released by cholangiocarcinoma cells, circ-CCAC1 can bind to EZH2 in endothelial cells and prevent the nuclear translocation of EZH2, weakening EZH2-mediated H3K27me3 modification of SG3GL2 promoter region. The SG3GL2 promoter is activated and leads to up-regulated expression of SG3GL2 to inhibit the expression of ZO-1/Occludin, to weaken the tight junction of endothelial cells, to increase permeability and to promote infiltration and migration of tumor cells (96).
Clinical Application
The Diagnostic and Prognostic Roles of circRNAs in GI Tumors
At present, a variety of circRNAs have been found to have abnormal expression in plasma, serum and exosomes in ESCC, gastric cancer, HCC and CRC (113), which makes circRNA as a promising marker for liquid biopsy of GI tumors. For instance, the abnormal expression of circGSK3β (76), hsa_circ_0001946 and hsa_circ_0043603 (114) in the plasma of ESCC patients is associated with the prognosis of ESCC patients. circSHKBP1 is highly expressed in the serum of patients with gastric cancer, which is also correlated with the prognosis of patients with gastric cancer (111). The abnormal expression of hsa_circ_0051443 (115), hsa_circ_100338 (116), circ-ZEB1.33 (117) in the serum of HCC patients is related to the prognosis of HCC patients. The abnormal expression of hsa_circ_0000370 in the blood of CRC patients is associated with the prognosis of CRC patients (118). The expression of circ-LDLRAD3 in the plasma of patients with pancreatic cancer is high, which is also related to lymph node metastasis, vascular invasion and clinical stage (119). The high stability and specific expression of blood circRNAs render it as an ideal biomarker for liquid biopsy.
circRNA as a Possible Therapeutic Target for GI Tumors
Jost et al. have found that circRNA, which targets miR-122, isolates miR-122 from HCV through sponge action, thereby effectively suppressing and decreasing the replication and spread of HCV (120). In GI tumor studies, many animal experiments have revealed that interference with circRNA expression can inhibit the occurrence and progression of tumors. For instance, circLPAR3 is highly expressed in ESCC. Nude mice injected with ESCC cells with low expression of circLPAR3 had significantly lower lung metastasis rate than those injected with control cells (tail vein model) (55). In addition, MET inhibitors can inhibit circBFAR-mediated PDCA in nude mice (73).
Conclusions and Perspectives
circRNA, a novel type of non-coding RNA, has been a research hotspot in GI tumors in recent years. Despite gratifying results, there are still many problems to be solved, such as the generation mode, influencing factors, degradation, biological effects and mechanisms of circRNA in GI tumors. A large number of in-depth studies are required for circRNA as a biomarker and therapeutic target for GI tumors as well as its clinical application.
Author contributions
Y-JS provided direction and guidance throughout the preparation of this manuscript. NF wrote and edited the manuscript. G-WD, HD and JL reviewed and made significant revisions to the manuscript. CL and LL collected and prepared the related papers. All authors contributed to the article and approved the submitted version.
Funding
This work was supported by the Research Fund of The Affiliated People’s Hospital of Jiangsu University (grant nos. Y2019015).
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Acknowledgments
We appreciate Prof. Jianwei Zhou and Prof. Yongqian Shu for providing assistance.
Supplementary Material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fonc.2021.665246/full#supplementary-material
Abbreviations
circRNAs, Circular RNAs; RBP, RNA binding protein; ICS, Intronic complementary sequence; dsRBD, Double-stranded RNA binding domain; GI, Gastrointestinal; ESCC, Esophageal squamous cell carcinoma; EMT, Mesenchymal-epithelial transformation; HCC, Hepatocellular carcinoma; CRC, Colorectal cancer; GBC, Gallbladder cancer; IRES, Internal ribosome entry site; CSCs, Cancer stem cells.
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Keywords: circular RNA, circRNA, gastrointestinal tumors, pre-mRNA, miRNA
Citation: Fang N, Ding G-W, Ding H, Li J, Liu C, Lv L and Shi Y-J (2021) Research Progress of Circular RNA in Gastrointestinal Tumors. Front. Oncol. 11:665246. doi: 10.3389/fonc.2021.665246
Received: 07 February 2021; Accepted: 15 March 2021;
Published: 15 April 2021.
Edited by:
Zsolt Kovács, George Emil Palade University of Medicine, Pharmacy, Sciences and Technology of Târgu Mureş, RomaniaReviewed by:
Hamed Mirzaei, Kashan University of Medical Sciences, IranShuji Ogino, Department of Pathology, Brigham and Women's Hospital and Harvard Medical School, United States
Copyright © 2021 Fang, Ding, Ding, Li, Liu, Lv and Shi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Yi-Jun Shi, shiyijun@126.com