- Université Libre de Bruxelles, Optique Nonlinéaire Théorique, Bruxelles, Belgium
In this paper, we analyze the strong feedback limit of two negative feedback schemes which have proven to be efficient for many biological processes (protein synthesis, immune responses, breathing disorders). In this limit, the nonlinear delayed feedback function can be reduced to a function with a threshold nonlinearity. This will considerably help analytical and numerical studies of networks exhibiting different topologies. Mathematically, we compare the bifurcation diagrams for both the delayed and non-delayed feedback functions and show that Hopf classical theory needs to be revisited in the strong feedback limit.
1 Introduction
The new multi-disciplinary field of Network Physiology concentrates on coordinated network interactions among distinct organs in the human body (Ivanov et al., 2016; Ivanov, 2021; Schöll et al., 2022). These coordinated network interactions are essential to generating distinct physiological states such as wake, sleep and sleep stages, rest and exercise, stress and anxiety, cognition, consciousness and unconsciousness. Disrupting organ communications can lead to dysfunction of individual systems or trigger a cascade of failures leading to a breakdown and collapse of the entire organism, such as sepsis, coma and multiple organ failure. In Refs. (Bashan et al., 2012; Ivanov et al., 2014), the authors considered a dynamical network consisting of ten nodes representing six physiological systems: brain activity (five EEG waves), cardiac, chin muscle tone, leg and eye movements. They observed changes in network topology during different sleep stages (deep, light, and wake). In addition, they recorded time delays between fluctuations in the output signals of one physiological system, such as cardiovascular, and the emergence of corresponding modulations in another, such as the respiratory. According to the authors, the longer the period during which this delay is constant the stronger the coupling between the two systems.
To develop adequate tools for network physiology, recent efforts focused on understanding the network dynamics of coupled excitable or oscillatory units. Traxl et al. (Traxl et al., 2014) study the effects of noise and global coupling strength on coupled oscillators with different network topologies and different node dynamics. They report a general scaling law for the synchronization of such networks. The inclusion of time delays between interacting nodes has a clear impact on the stability of the network. Inspired by leaky integrate-and-fire models for neuronal networks (Politi and Luccioli, 2010), Mafahim et al. (Mafahim et al., 2015) investigate the dynamics of interacting neurons described by
where k is the control parameter and Lij describes the coupling between neurons. Note that i = 1, .N where N is the total number of neurons (nodes). The function f(t) is a Dirac delta-function. Each neuron moves along the x − axis starting at the rest state x = 0 and fires when it reaches the threshold x = 1. When the neuron fires it forces all the neurons linked to it to make a step ahead or backward by the quantity k according to whether Lij = 1 (excitatory) or Lij = −1 (inhibitory). The authors highlight the role of inhibitory links in controlling global network dynamics. While considering a simple delayed coupling mechanism between neurons is reasonable for populations of active neurons, delayed nonlinear feedbacks could be more appropriate as communication mechanisms between distinct organs in the body. The mathematical problem then takes the form
where g(xi) describes the dynamics of xi in the absence of coupling. The Aij measures the (small or strong) coupling strengths between nodes. The nonlinear function f (xj (t − τj)) models the delayed feedback of node j with respect to node i. The complexity of the dynamical problem when N > 2 have motivated simplifications which have been explored both analytically and numerically. Networks of delayed coupled Kuramoto oscillators are popular dynamical problems because the state of an oscillator is described by a single angular variable (Laing, 2016; Bick et al., 2020). Another simplification is to consider ring geometries of (unidirectional or bidirectional) coupled nodes (Yuan and Campbell, 2004; Bungay and Campbell, 2007; Ibrahim et al., 2021; Bukh et al., 2023). But the main difficulty remains the fact that we are dealing with coupled delay differential equations (DDEs). If the feedback is strong, however, the feedback function may approach a function exhibiting a threshold nonlinearity which will considerably simplify Eq. 2. In this paper, we consider two delayed negative feedback functions of biological interest and analyze the strong feedback limit. This analysis has never been done and, as we shall demonstrate, Hopf bifurcation theory needs to be revisited.
Negative feedback is one of fundamental mechanisms in cellular networks (Tyson et al., 2003; Tsai et al., 2008; Alon, 2019), which fulfils a variety of functions such as mediating adaptation (Yi et al., 2000; Ma et al., 2009; Ni et al., 2009), stabilizing the abundance of biochemical components (Hasty et al., 2002; Tyson et al., 2003; Alon, 2019), inducing oscillations (Tsai et al., 2008; Elowitz and Leibler, 2000; Kholodenko, 2000; Novak et al., 2007) and decoupling signal and response time (Tyson et al., 2003). Negative feedbacks are shown to be present in many biochemical systems including bacterial adaptation (Yi et al., 2000; Kollmann et al., 2005), mammalian cell cycle (Novak et al., 2010; Ferrell et al., 2011), stress response in yeast (Klipp et al., 2005; Schaber et al., 2012).
A negative feedback control slows of stops a reaction. It may involve a time delay which is needed for signal transduction and transcription, translation and formation of biochemical species (Hoffmann et al., 2002; Börsch and Schaber, 2016). If the delay is too large, however, the control loop loose its landmarks (it does not remember its state so long ago) and exhibit oscillations. The simplest model problem is described by the first order DDE
where prime means differentiation with respect to time t, x(t) is the state variable, and x (t − τ) is its value at time t − τ. τ > 0 is the delay and b > 0 is a constant that measures the rate to equilibrium in the absence of feedback. The nonlinear function f(x) corresponds to a negative feedback loop: f = 1 if x (t − τ) is small (production is activated) and f = 0 if x (t − τ) is large (production stops).
We first consider the case
and analyze the limit κ → ∞. implying the limit f(x) = ∓1 as x → ±∞. Eqs 3, 4 appear in the modeling of delayed coupled cells (Yuan and Campbell, 2004; Bungay and Campbell, 2007) and for a minimal description of ENSO oscillations (Ghil et al., 2008; Keane et al., 2017). Compared to a purely cubic nonlinearity, the negative feedback function 4) saturates as
We next consider the bifurcation diagram of Eq. 3 with the Hill function
and analyze the limit p → ∞ implying the limit f(x) → 1 − H (x − 1) where H(y) is the Heaviside function. Originally, Eqs 3, 5 were modeling the control of hematopoiesis (production of blood cells). Proliferation and maturation of blood cells takes time, so there is a delay, τ, between the detection of a deficiency in a circulating population, x, and the appearance in the bloodstream of cells to replenish this population (Mackey and Glass, 1977; Glass and Mackey, 1979). Today, it is known as the Mackey-Glass equation and is considered as a reference DDE for any biological process involving a delayed negative feedback [(Fall et al., 2002) p249, (Beuter et al., 2003) p263, (Milton and Ohira, 2014) p236].
The plan of the paper is as follows. In Section 2, we consider the delayed sigmoidal feedback function 4) and determine the bifurcation diagram of the time-periodic solutions. The diagram shows two distinct domains, namely, one close to the Hopf bifurcation point where the amplitude grows parabolically and a larger domain where the amplitude increases linearly. In Section 3, we analyze the delayed Hill feedback function 5). The bifurcation diagram again exhibits two domains with different oscillatory waveforms. Close to the bifurcation point, the small amplitude oscillations quickly change from harmonic to pulsating oscillations. It motivates the analysis of two singular Hopf bifurcations detailed in Section 3.2. In the last section, we emphasize the role of a delayed exponential function appearing in several negative feedback problems and discuss the limit of large delays as another singular limit of physical interest.
2 Sigmoidal feedback function
In this section, we analyze Eqs 3, 4 using τ as our bifurcation parameter.
2.1 Hopf bifurcation analysis
From the linearized theory, we determine the first Hopf bifurcation located at
We may construct a small amplitude periodic solution near τ = τ0 by using the Lindstedt-Poincaré method (Erneux, 2009; Smith, 2011). We find
By comparing the first two terms in (Eq. 7) in the limit κ large, we note that this expansion becomes non uniform if (τ − τ0)/τ0 = O (1), or equivalently, if
In other words, the domain where the amplitude of the periodic solution increases parabolically as
is only valid if τ − τ0 ≪ κ−1.
2.2 Sawtooth oscillations
By contrast to our Hopf bifurcation analysis where we were looking for a small amplitude solution and then investigated its behavior for large κ, we now seek a periodic solution of arbitrary amplitude but take advantage of the large value of κ. A typical numerical solution for κ = 10 and τ = 0.4 > τ0 = 0.157 is shown in Figure 1. This solution consists of a succession of straight lines connected at extrema located at t = (1 + 2n)τ (n = 0, 1, … ). It motivates to construct an analytical solution by using the method of matched asymptotic expansions (Kevorkian and Cole, 1996; Bender and Orszag, 1999; O’Malley, 2014). The method considers two distinct approximations valid for different intervals of time. The outer approximation, valid for a large subdomain, is obtained by treating the problem as a regular perturbation problem. The inner approximation solves a separate perturbation problem valid in a small subdomain where the outer solution is inaccurate. This area is often referred to as a transition layer. Outer and inner solutions are then combined through a process called “matching” in such a way that a solution for the whole domain is obtained.
Figure 1. Periodic solution of Eqs 3, 4 for κ = 10 and τ = 0.4. The figure shows x(t) (black), x (t − τ) (red), and the leading asymptotic approximation provided by (Eqs 26, 27) (grey). The square shows x (t − τ) ≃ t − τ when t is close to τ.
2.3 Outer solution
Noting that tanh (κx) = 1 if κx ≫ 1 and tanh (κx) = −1 if κx ≪ 1, the leading approximation of Eqs 3, 4 satisfies
Consequently, x0(t) is alternatively increasing and decreasing as
and so on. Eq. 10 has been studied by Fridman et al. (Fridman et al., 2002) who showed that only the 4τ-periodic solution is stable, whereas the 4τ/(4n + 1) -periodic oscillations (n = 1, 2, … ) are unstable.
2.4 Inner solution
We now examine Eqs 3, 4 near t = τ and x = τ. To this end, we introduce the variables s and X defined by
We note from Figure 1 (square in the figure) that
when t is close to τ. Eqs 3, 4 then implies that the leading order equation for X = X0 is
The solution of this equation needs to satisfy matching conditions as s → ±∞. They are obtained by first introducing (14) into (11). We find
which implies the condition
Second, by introducing (14) into (12), we obtain
which leads to the condition
The solution of Eq. 16 is
where C is a constant of integration. We examine the limits s → ±∞ of (Eq. 21) which need to match (18) and (20). We find the conditions.
Both conditions requires that
The solution Eq. 21 now is given by
Figure 2 represents the numerical bifurcation diagram of the periodic solutions for κ = 10 together with Hopf local approximation 9) and the large κ approximation given by (Eq. 28). Similar inner solutions may be constructed for the other extrema. An uniform solution combining outer and inner solutions leads to.
and so on. These approximations are compared to the numerical solution (grey line in Figure 1). The reason for such good agreement comes from the fact that the first correction to the leading outer approximation x = x0(t) is not O (κ−1) but much smaller like O (exp (−κ)). This is because the expansion of tanh (κx) as κx → ±∞ is tan(κx) = ±1–2 exp (∓κx) + as κx → ±∞. The extrema of the oscillations are obtained from (Eq. 26) and (Eq. 27) at t = τ and t = 3τ, respectively:
Figure 2. Bifurcation diagram of the periodic solutions of Eqs. 3, 4 for κ = 10. The numerical bifurcation diagram of the extrema (black) is compared to Hopf local approximation (9) (blue). The straight lines (red) correspond to the approximation (28).
3 Hill feedback function
By the end of the seventies two independent papers devoted to the development of red blood cells generated considerable mathematical interest. The paper by Wazewska-Czyzewska and Lasota (Wazewska-Czyzewska and Lasota, 1976) and the one by Mackey and Glass (Mackey and Glass, 1977) appeared in 1976 and 1977, respectively. Without knowing each other at that time, these authors published almost simultaneously two models very similar in several points. The one from Wazewska and Lasota is given by (Wazewska-Czyzewska and Lasota, 1976)
where a, b, and c are all positives. The other, today known as one of the two Mackey-Glass equations, is given by Eqs. 3, 5 (Mackey and Glass, 1977; Glass and Mackey, 1979) where p > 0 and b > 0. The Wazewska-Lasota Eq. 29 was derived from an age structured partial differential equation, and delay was a consequence of its integration. On the other hand, the Mackey-Glass equation Eqs. 3, 5 had been set up directly into a delay differential equation. The nonlinear function 5) is Hill function which is based on the law of mass action for the binding of molecules (Milton and Ohira, 2014). Eqs. 3, 5 has been the source of many numerical and analytical studies. In particular, the limit of a strong feedback (p → ∞) allows to simplify 5) and obtain an analytical approximation. Our objective is to compare its bifurcation diagram with the one obtained numerically from the original DDE with a fixed value of p. As we shall demonstrate, the agreement between the two diagrams is excellent except near the Hopf bifurcation points.
Eqs. 3, 5 admit a unique steady state which is unstable if bH1 < b < bH2. The critical points b = bH1 and b = bH2 are Hopf bifurcation points. Their analytical determination is documented at several places (Fall et al., 2002) p249, (Milton and Ohira, 2014), p243 and we briefly detail their conditions. From the steady state equation, we first determine b as a function of x
The characteristic equation for the growth rate λ is
Inserting λ = iω into Eq. 31, we obtain from the real part a simple expression for xp given by
where z ≡ ωτ. From the imaginary part, we determine the following equation for τ as a function of z and b
Eqs 30, 32, 33 are the equations defining the Hopf bifurcation in parameter space. Using Eq. 32 for xp and determining
The approximation of the upper bifurcation point is provided in parametric form (π/2 < z0 < π is the parameter).
Figure 3. Hopf bifurcation line in the (τ, b) parameter space (p = 20).
3.1 Bifurcation diagrams
By the end of the seventies and early eighties, Mathematicians discovered that piecewise linear (Glass and Mackey, 1979; Mackey and an der Heiden, 1984) or piecewise constant functions (An der Heiden and Walther, 1983) as nonlinearities can make dynamics generated by a scalar delay differential equation accessible, and that one can compute periodic solutions explicitly. In the large p limit, the nonlinear function 5) approaches the function 1 − H (x − 1) where H(y) is the Heaviside step function. Consequently, Eqs 3, 5 simplify as
A typical periodic solution of Eq. 38 is shown in Figure 4. Eq. 38 consists of a pair of ordinary differential equations which can be solved by the method of steps (An der Heiden and Mackey, 1982). The application of the method is well documented in (Mackey and Glass, 1977; Mackey et al., 1996). The method is also used for a delayed negative feedback problem (Milton, 2003) modeling changes in pupil size. The periodic solution consists of increasing and decreasing exponentials. The extrema of the oscillations are given by.
while the period is
Figure 4. Periodic solution of Eq. 38. b = 0.4 and τ = 1.8.
The expressions (Eq. 39) and (Eq. 40) for the extrema and the Period (Eq. 41) are compared to the numerical bifurcation diagrams obtained from Eqs 3, 5 with p = 20. See Figure 5.
Figure 5. Bifurcation diagram. The fixed parameters are τ = 1.8 and p = 20. The black lines show the extrema and the period of the limit-cycle oscillations of Eqs 3, 5. The red lines are the approximations of the extrema and period provided by Eqs 39–41.
The same construction of the solution is proposed in Ref. (Coombes and Laing, 2009). but with τ as the bifurcation parameter instead of b. The amplitude of the oscillations xmax − xmin increases like τ and saturates at a fixed value as τ → ∞.
The analytical approximations obtained in the limit p → ∞ correctly match the bifurcation branches obtained numerically from Eqs 3, 5 except near the two Hopf bifurcation points where the period becomes infinite. According to Hopf bifurcation theory, the oscillations near the bifurcation point should be nearly sinusoidal and exhibit a fixed period. So how may we understand the radical change of the oscillations from harmonic to pulsating in the vicinity of the two Hopf bifurcation points ? To resolve this problem, we need to take into account the large value of p in the construction of a small amplitude solution near each bifurcation points. To this end, we plan to scale the deviation b − bH with respect to p−1 and then reexamine the large p limit.
3.2 Singular hopf bifurcations
We note from Eq. 39 and Eq. 40 that if b → 0+, xmin → 1, xmax → 1 + τ, and P → b−1 ln (1 + τ) → ∞. On the other hand, if b → 1−, xmin → exp (−τ), xmax → 1+, and P → − ln (1 − b) → ∞. Eq. 38 fails to provide the solution of Eqs 3, 5 near b = 0 and b = 1 because the period P become infinite at these points. We also need to realize that our analytical construction of the limit-cycle assumed that x(t) is sequentially larger and less that 1. This is not the case near the two Hopf bifurcation points where the oscillations remains either above or below 1. Figure 6 shows the limit-cycle oscillations obtained numerically from Eqs 3, 5 for b slightly above bH2 ≃ 0.048. The oscillations are sinusoidal for b = 0.05 and are clearly above x = 1 while the oscillations for b = 0.1 have their minima close to x = 1.
Figure 6. Limit-cycle oscillations close to the Hopf bifurcation point b = bH2 = 0.048. p = 20 and τ = 1.8. The value of b is indicated in the figure. The oscillations for b = 0.05 are sinusoidal with a period P = 3.89 close to the Hopf bifurcation period PH2 ≃ 2π/(π/2 + p−1) = 3.88. The oscillations for b = 0.1 exhibit minima slightly below x = 1 and the waveform approaches two successive exponentials. The period has increased and equals P = 4.88.
Our asymptotic theory based on the large value of p needs to be revised near the two Hopf bifurcation points. We first consider the lower Hopf bifurcation point b = bH2 ∼ 0 for which the analysis is simpler than the case b = bH1 ∼ 1.
3.2.1 b = bH2 ∼ 0
The analysis of the Hopf bifurcation point detailed in the appendix suggests that xp = O(p) and b = O(p−1). We introduce the new bifurcation parameter b1 = O(1) defined by
and take into account that xp (t − τ) is an O(p) large quantity. Eqs 3, 5 then simplifies as
We next introduce the new dependent variable u defined by
where the p−1 ln(p) term is motivated by the expansion of x at the Hopf bifurcation b = bH2 (see Appendix). We determine x−p (t − τ) and obtain1
From Eq. 43, we then find that the leading order problem is O (p−1) and is given by
Eq. 46 belongs to the family of Wright’s equation (Wright’s equation is Eq. 46 with b1 = 1). It admits a Hopf bifurcation at b1 = π/(2τ). The bifurcation diagram of Eq. 46 is shown in terms of the extrema of x in Figure 72. The agreement between the minima of the oscillations is excellent but the maxima diverges as soon as b > 0.06.
Figure 7. Bifurcation diagrams near b = bH2. The black lines correspond to the bifurcation diagram of Eqs 3, 5. The red dots mark the bifurcation diagram of Eq. 46.
3.2.2 b = bH1 ∼ 1
The analysis of the Hopf bifurcation point detailed in the appendix indicates that xp = O (p−1) for the upper Hopf bifurcation branch. Eqs 3, 5 then simplifies as
We introduce the new dependent variable u and new control parameter b1 = O(1) as.
where the ln(p)/p correction term is motivated by the asymptotic expressions of x and b at b = bH1 (see Supplementary Appendix). Using (Eq. 48), we first determine the leading approximation of xp. We obtain3
Second, we evaluate bx using (Eq. 48) and (Eq. 49). We find
Inserting (Eq. 48), (Eq. 50), and (Eq. 51) into Eq. 47, we find that the leading problem for u is O(p−1) and is given by
The steady state solution u = u(b1) in implicit form is
and the conditions for a Hopf bifurcation are.
The expression (Eq. 49) with (Eq. 53) and x1 replacing u is identical to Eq. 64 in the appendix. Eqs 54, 55 are identical to (66) and (63) in the appendix with x1 replacing u and z0 replacing z.
Figure 8 compares the bifurcation diagram of the original equations (Eqs 3, 5) and the bifurcation diagram obtained using the reduced Eq. 52. The agreement between the maxima is excellent but the minima quickly diverges as we deviate from the Hopf bifurcation point.
Figure 8. Bifurcation diagrams near b = bH1. The black lines correspond to the bifurcation diagram of Eqs 3, 5. The red dots mark the bifurcation diagram of Eq. 52. The analytical Hopf bifurcation point at
4 Discussion
The new field of network physiology is based on the observation that a healthy body requires good synchronization between different organs. When perturbing elements disturb this equilibrium, many physiological processes are changing from metabolism, immune function to cardiovascular regulation. An example of a simple and well studied network is the circadian network. Circadian rhythms are generated by the autonomous circadian clock, the suprachiasmatic nucleus (SCN), and clock genes that are present in all tissues (Buijs et al., 2016). The SCN times these peripheral clocks, as well as behavioral and physiological processes. Recent studies have shown that frequent violations of conditions set by our biological clock, such as shift work, jet lag, sleep deprivation, or simply eating at the wrong time of the day, may have deleterious effects on health. On the long run, these perturbations are desynchronizing the circadian network.
In this paper, we hypothesize that strong delayed negative feedback loops between elements of the network are essential for a good synchronization. This idea is motivated by the importance of negative feedback in cellular processes. We have considered two delayed negative feedback which have proven to be useful for combined analytical and numerical studies. The limit of strong feedback allows to reduce the delayed function to a function exhibiting a threshold nonlinearity. We have shown that Hopf bifurcation theory needs to be revisited in the case of a strong negative feedback. By treating the Hopf problem as a singular perturbation problem, we determine small amplitude solutions which are quickly changing waveforms as we deviate from the bifurcation point. Like Wazewska and Lasota Eq. 29, the reduced problems for the two Hopf bifurcations of Mackey-Glass equation (Eqs 3, 5) exhibit a delayed exponential nonlinearity. The latter also appeared in a minimal model for periodic or episodic star formation (Alice et al., 2008).
The singularity of the Hopf bifurcation caused by the strong feedback limit is not the only one of physical interest. The limit of large delay is another case where harmonic oscillations quickly become 2τ − periodic square-waves as we deviate from the Hopf bifurcation point (Erneux et al., 2004). From the analytical solution of Eq. 38, we note that the square-wave is switching from 0 to b−1 through fast transition layers consisting of decaying exponentials. Figure 9 shows the time-periodic solution of Mackey-Glass equations Eqs 3, 5 for a large value of the delay τ.
Figure 9. Periodic solution obtained numerically from Eqs 3, 5. The parameters are τ = 100, b = 0.1, and p = 20. The red curves are the large p approximations obtained from solving Eq. 38. Fast transition layers appears at t = 0, t = tm and t = P.
Author contributions
TE: Writing–original draft.
Funding
The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.
Acknowledgments
The author acknowledges useful discussions with MC Mackey.
Conflict of interest
The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fnetp.2024.1399272/full#supplementary-material
Footnotes
1
2In our simulations, we consider the logistic equation equivalent to Eq. 46 after the change of variables u = − ln(v). It is given by
3
4ln(xp) = p ln(x)
5ln(xp) = p ln(x)
References
Alice, C., Quillen, A. C., and Bland-Hawthorn, J. (2008). When is star formation episodic? A delay differential equation ‘negative feedback’ model. Mon. Not. R. Astron. Soc. 386, 2227–2234. doi:10.1111/j.1365-2966.2008.13193.x
Alon, U. (2019) An introduction to systems biology: design principles of biological circuits. Boca Raton: Chapman and Hall/CRC.
An der Heiden, U., and Mackey, M. C. (1982). The dynamics of production and destruction: analytic insight into complex behavior. J. Math. Biol. 16, 75–101. doi:10.1007/bf00275162
An der Heiden, U., and Walther, H. O. (1983). Existence of chaos in control systems with delayed feedback. J. Diff. Equations 47, 273–295. doi:10.1016/0022-0396(83)90037-2
Bashan, A., Bartsch, R. P., Kantelhardt, J. W., Havlin, S., and Ivanov, P. C. (2012). Network physiology reveals relations between network topology and physiological function. Nat. Commun. 3, 702. doi:10.1038/ncomms1705
Bender, C. M., and Orszag, S. A. (1999) Advanced mathematical methods for scientists and engineers. New York: Springer.
Beuter, A., Glass, L., Mackey, M. C., and Titcombe, M. (2003) Nonlinear dynamics in physiology and medicine. New York: Springer.
Bick, C., Goodfellow, M., Laing, C. R., and Martens, E. A. (2020). Understanding the dynamics of biological and neural oscillator networks through exact mean-field reductions: a review. J. Math. Neurosci. 10 (1), 9. doi:10.1186/s13408-020-00086-9
Börsch, A. B., and Schaber, J. (2016). How time delay and network design shape response patterns in biochemical negative feedback systems. BMC Syst. Biol. 10, 82. doi:10.1186/s12918-016-0325-9
Buijs, F. N., León-Mercado, L., Guzmán-Ruiz, M., Guerrero-Vargas, N. N., Romo-Nava, F., and Buijs, R. M. (2016). The circadian system: a regulatory feedback network of periphery and brain. Physiol. (Bethesda) 31 (3), 170–181. doi:10.1152/physiol.00037.2015
Bukh, A. V., Shepelev, I. A., Elizarov, E. M., Muni, S. S., Schöll, E., and Strelkova, G. I. (2023). Role of coupling delay in oscillatory activity in autonomous networks of excitable neurons with dissipation. Chaos 33, 073114. doi:10.1063/5.0147883
Bungay, S., and Campbell, S. A. (2007). Patterns of oscillation in a ring of identical cells with delayed coupling. Int. J. Bifurcation Chaos 17 (9), 3109–3125. doi:10.1142/s0218127407018907
Coombes, S., and Laing, C. R. (2009). Instabilities in threshold-diffusion equations with delay. Phys. D. 238, 264–272. doi:10.1016/j.physd.2008.10.014
Elowitz, M. B., and Leibler, S. (2000). A synthetic oscillatory network of transcriptional regulators. Nature 403 (6767), 335–338. doi:10.1038/35002125
Erneux, T., Larger, L., Won Lee, M., and Goedgebuer, J. P. (2004). Ikeda Hopf bifurcation revisited. Phys. D. 194, 49–64. doi:10.1016/j.physd.2004.01.038
Fall, C. P., Marland, E. S., Wagner, J. M., and Tyson, J. J. (2002) Computational cell biology. New York: Springer.
Ferrell, J. E., Tsai, T. Y.-C., and Yang, Q. (2011). Modeling the cell cycle: why do certain circuits oscillate? Cell 144 (6), 874–885. doi:10.1016/j.cell.2011.03.006
Fridman, L., Fridman, E., and Shustin, E. (2002). “Steady modes and sliding modes in relay control systems with delay,” in Sliding mode control in engineering. Editors J. P. Barbot, and W. Perruguetti (New York: Marcel Dekker), 264–295.
Ghil, M., Zaliapin, I., and Thompson, S. (2008). A delay differential model of ENSO variability: parametric instability and the distribution of extremes. Nonlin. Process. Geophys. 15, 417–433. doi:10.5194/npg-15-417-2008
Glass, L., and Mackey, M. C. (1979). Pathological conditions resulting from instabilities in physiological control systems. Ann. N. Y. Acad. Sci. 316, 214–235. doi:10.1111/j.1749-6632.1979.tb29471.x
Hasty, J., Dolnik, M., Rottschäfer, V., and Collins, J. J. (2002). Synthetic gene network for entraining and amplifying cellular oscillations. Phys. Rev. Lett. 88 (14), 148101. doi:10.1103/PhysRevLett.88.148101
Hoffmann, A., Levchenko, A., Scott, M. L., and Baltimore, D. (2002). The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. Science 298 (5596), 1241–1245. doi:10.1126/science.1071914
Ibrahim, M. M., Kamran, M. A., Mannan, M. M. N., Jung, I. H., and Kim, S. (2021). Lag synchronization of coupled time-delayed FitzHugh–Nagumo neural networks via feedback control. Sci. Rep. 11 (1), 3884. doi:10.1038/s41598-021-82886-x
Ivanov, P. C. (2021). The new field of network physiology: building the human physiolome. Front. Netw. Physiol. 1, 711778. doi:10.3389/fnetp.2021.711778
Ivanov, P. C., and Bartsch, R. P. (2014). “Network physiology: mapping interactions between networks of physiologic networks,” in Networks of networks: the last frontier of complexity. Editors G. D’Agostino, and A. Scala (Berlin, Germany: Springer International Publishing Switzerland), 203–222.
Ivanov, P. C., Liu, K. K. L., and Bartsch, R. P. (2016). Focus on the emerging new fields of network physiology and network medicine. New J. Phys. 18, 100201. doi:10.1088/1367-2630/18/10/100201
Keane, A., Krauskopf, B., and Postlethwaite, C. M. (2017). Climate models with delay differential equations. Chaos 27 (11), 114309. doi:10.1063/1.5006923
Kevorkian, J., and Cole, J. D. (1996) Multiple scale and singular perturbation methods. Berlin: Springer-Verlag.
Kholodenko, B. N. (2000). Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur. J. Biochem. 267 (6), 1583–1588. doi:10.1046/j.1432-1327.2000.01197.x
Klipp, E., Nordlander, B., Krüger, R., Gennemark, P., and Hohmann, S. (2005). Integrative model of the response of yeast to osmotic shock. Nat. Biotechnol. 23 (8), 975–982. doi:10.1038/nbt1114
Kollmann, M., Løvdok, L., Bartholomé, K., Timmer, J., and Sourjik, V. (2005). Design principles of a bacterial signalling network. Nature 438 (7067), 504–507. doi:10.1038/nature04228
Laing, C. R. (2016). Travelling waves in arrays of delay-coupled phase oscillators. Chaos 26, 094802. doi:10.1063/1.4953663
Ma, W., Trusina, A., El-Samad, H., Lim, W. A., and Tang, C. (2009). Defining network topologies that can achieve biochemical adaptation. Cell 138 (4), 760–773. doi:10.1016/j.cell.2009.06.013
Mackey, M. C. (1996). “Mathematical models of hematopoietic cell replication and control,” in The art of mathematical modelling: case studies in ecology, physiology and biofluids. Editors H. G. Othmer, F. R. Adler, M. A. Lewis, and J. C. Dallon (Hoboken, New Jersey, USA: Prentice Hall), 149–178.
Mackey, M. C., and an der Heiden, U. (1984). The dynamics of recurrent inhibition. J. Math. Biol. 19, 211–225. doi:10.1007/BF00277747
Mackey, M. C., and Glass, L. (1977). Oscillation and chaos in physiological control systems. Science 197, 287–289. doi:10.1126/science.267326
Mafahim, J. U., Lambert, D., Zare, M., and Grigolini, P. (2015). Complexity matching in neural networks. New J. Phys. 17, 015003. doi:10.1088/1367-2630/17/1/015003
Milton, J. (2003). “Pupil light reflex: delays and oscillations,” in Nonlinear dynamics in physiology and medicine. Interdisciplinary applied mathematics. Editors A. Beuter, L. Glass, M. C. Mackey, and M. S. Titcombe Berlin: Springer.
Ni, X. Y., Drengstig, T., and Ruoff, P. (2009). The control of the controller: molecular mechanisms for robust perfect adaptation and temperature compensation. Biophys. J. 97 (5), 1244–1253. doi:10.1016/j.bpj.2009.06.030
Novak, B., Kapuy, O., Domingo-Sananes, M. R., and Tyson, J. J. (2010). Regulated protein kinases and phosphatases in cell cycle decisions. Curr. Opin. Cell Biol. 22 (6), 801–808. doi:10.1016/j.ceb.2010.07.001
Novak, B., Tyson, J. J., Gyorffy, B., and Csikasz-Nagy, A. (2007). Irreversible cell-cycle transitions are due to systems-level feedback. Nat. Cell Biol. 9 (7), 724–728. doi:10.1038/ncb0707-724
Politi, A., and Luccioli, S. (2010). “Dynamics of networks of leaky-integrate-and-fire neurons,” in Network science: complexity in nature and technology (Berlin, Germany: Springer), 217–242.
Schaber, J., Baltanas, R., Bush, A., Klipp, E., and Colman-Lerner, A. (2012). Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast. Mol. Syst. Biol. 8, 622. doi:10.1038/msb.2012.53
Schöll, E., Sawicki, J., Berner, R., and Ivanov, P. C. (2022). Editorial: adaptive networks in functional modeling of physiological systems. Front. Netw. Physiol. 2, 996784. doi:10.3389/fnetp.2022.996784
Smith, H. (2011) An introduction to delay differential equations with applications to the life Sciences. New York: Springer.
Traxl, D., Boers, N., and Kurths, J. (2014). General scaling of maximum degree of synchronization in noisy complex networks. New J. Phys. 16, 115009. doi:10.1088/1367-2630/16/11/115009
Tsai, T. Y.-C., Choi, Y. S., Ma, W., Pomerening, J. R., Tang, C., and Ferrell, J. E. (2008). Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 321 (5885), 126–129. doi:10.1126/science.1156951
Tyson, J. J., Chen, K. C., and Novak, B. (2003). Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 15 (2), 221–231. doi:10.1016/s0955-0674(03)00017-6
Wazewska-Czyzewska, M., and Lasota, A. (1976). Matematyczne problemy dynamiki ukladu krwinek czerwonych (Mathematical problems of the dynamics of red blood cell population). Available at: https://wydawnictwa.ptm.org.pl/index.php/matematyka-stosowana/article/view/1173.
Yi, T. M., Huang, Y., Simon, M. I., and Doyle, J. (2000). Robust perfect adaptation in bacterial chemotaxis through integral feedback control. Proc. Natl. Acad. Sci. 97 (9), 4649–4653. doi:10.1073/pnas.97.9.4649
Yuan, Y., and Campbell, S. A. (2004). Stability and synchronization of a ring of identical cells with delayed coupling. J. Dyn. Diff. Equat. 16, 709–744. doi:10.1007/s10884-004-6114-y
Appendix
The large p limit of the Hopf bifurcation points of Eqs. (3) and (5)
In this appendix, we determine the large p limit of the upper and lower parts of the Hopf bifurcation line b = b(τ) shown in Figure 3. The conditions for the Hopf bifurcation are provided by the steady state equation (30) and Eqs. (32), (33).
The lower Hopf bifurcation b = bH2 ≪ 1
Numerical simulations suggest that xp = O(p) and x ∼ 1 for the lower Hopf bifurcation branch. It motivates to seek a solution for x of the form
where the p−1 ln(p) correction term is needed when we determine xp and x1 = O(1). We find4
as the leading approximation. From Eqs. (30) and (32), we then determine b and z ≡ ωτ as
Last, we evaluate τ from (33) and obtain
or equivalently,
5.2 The upper Hopf bifurcation b = bH1 ∼ 1
Numerical simulations now suggest that xp = O(p−1) and x ∼ 1 for the upper Hopf bifurcation branch. We seek a solution for x of the form
where the −p−1 ln(p) correction term is needed when we determine xp and x1 = O(1). We obtain5
From Eq. (30), we then determine b as
Inserting
into Eq. (32), we find that the leading equation is cos(z0) = − exp(−x1). It then provides an expression for x1 = x1(z0) given by
Last, we evaluate τ from Eq. (33) and find
In summary, the large p limit of the upper Hopf bifurcation branch shown in Figure 3 is provided in parametric form by Eq. (64) with x1 = x1(z0) determined from (66), and by Eq. (67) (z0 is the parameter).
Keywords: network physiology, delayed negative feedback, Mackey-Glass equation, delay differential equation, hopf bifurcation, time periodic oscillations, singular perturbation theory
Citation: Erneux T (2024) Strong delayed negative feedback. Front. Netw. Physiol. 4:1399272. doi: 10.3389/fnetp.2024.1399272
Received: 11 March 2024; Accepted: 17 April 2024;
Published: 05 June 2024.
Edited by:
Eckehard Schöll, Technical University of Berlin, GermanyReviewed by:
Cristina Masoller, Universitat Politecnica de Catalunya, SpainKathy Lüdge, Technische Universität Ilmenau, Germany
Copyright © 2024 Erneux. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Thomas Erneux, dGhvbWFzLmVybmV1eEB1bGIuYmU=