ORIGINAL RESEARCH article

Front. Microbiol., 05 December 2023

Sec. Aquatic Microbiology

Volume 14 - 2023 | https://doi.org/10.3389/fmicb.2023.1253239

Morphological and multi-gene phylogenetic analyses reveal five new hyphomycetes from freshwater habitats

  • 1. College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, Guizhou, China

  • 2. School of Chinese Medicine, Hong Kong Baptist University, Hong Kong, Hong Kong SAR, China

  • 3. School of Food and Pharmaceutical Engineering, Guizhou Institute of Technology, Guiyang, Guizhou, China

Abstract

During the survey on freshwater hyphomycetes in Guangxi, Guizhou and Hainan Provinces, China, five fresh collections were encountered. Based on their morphology, these five isolates were identified as belonging to Hermatomyces, Kirschsteiniothelia, Paramonodictys, Pleopunctum and Sparticola. Multi-gene phylogenetic analyses were performed for each genus, which resulted in the identification of five new species, namely Hermatomyces hainanensis, Kirschsteiniothelia ramus, Paramonodictys globosa, Pleopunctum guizhouense, and Sparticola irregularis. Detailed descriptions and illustrations of the morphological characteristics of these new taxa were provided. This research enriches the biodiversity of freshwater dematiaceous hyphomycetes.

1 Introduction

Freshwater fungi are a diverse and heterogeneous group that can be classified into different classes (Marvanová, 1980; Goh and Hyde, 1996; Shearer et al., 2009; Baschien et al., 2013; Luo et al., 2019; Dong et al., 2020; Yang et al., 2023). Calabon et al. (2022) listed 3,870 species occurring in freshwater habitats. They play essential roles, such as decomposers for submerged woody debris, in freshwater ecosystems (Wong et al., 1998; Grossart et al., 2019), and many of them possess unique biochemical properties that have great potential for various applications (Krauss et al., 2011; El-Elimat et al., 2021). Therefore, the study of fungal biodiversity in freshwater habitats is important, and five genera are involved in the present paper.

Hermatomyces was introduced by Spegazzini (1910) with the type species H. tucumanensis. This genus was previously placed in Lophiotremataceae (Tibpromma et al., 2016; Doilom et al., 2017). Hashimoto et al. (2017) excluded Hermatomyces from Lophiotremataceae and resurrected the family Hermatomycetaceae based on their phylogenetic analyses using SSU, ITS, LSU, tef1-α and rpb2 sequences. Asexual morph of Hermatomyces species is characterized by sporodochial conidiomata and dimorphic conidia, i.e., cylindrical conidia and lenticular conidia (Ellis, 1971; Chang, 1995; Tibpromma et al., 2016; Doilom et al., 2017; Koukol et al., 2018; Ren et al., 2021). Its sexual morph was recently reported by de Silva et al. (2022), which has dark brown to black ascomata with central ostiole, 8-spored, bitunicate asci, and broadly fusiform, hyaline, 1-septate ascospores.

Hawksworth (1985) proposed Kirschsteiniothelia as a sexual morphic genus, which was linked to the Dendryphiopsis asexual morph. Kirschsteiniotheliaceae was established by Boonmee et al. (2012) after observing the sexual-asexual morph connection based on a culture study. The order Kirschsteiniotheliales was subsequently proposed by Hernández-Restrepo et al. (2017). The dendryphiopsis-like asexual morph is characterized by macronematous, mononematous, apically branched conidiophores and cylindrical conidia with rounded ends (Ellis, 1971; Pratibha et al., 2010; Boonmee et al., 2012). Su et al. (2016) identified Kirschsteiniothelia submersa as a sporidesmium-like asexual morph, and then several novel Kirschsteiniothelia species with sporidesmium-like morphology were introduced, such as K. aquatica, K. cangshanensis, K. fluminicola and K. rostrata (Hyde et al., 2017; Bao et al., 2018). Sun et al. (2021) provided a detailed summary of Kirschsteiniothelia species.

Hyde et al. (2020) introduced Paramonodictys for a monodictys-like species, which is characterized by present stroma and globose to subglobose, brown, muriform conidia. Paramonodictys is classified in Parabambusicolaceae (Pleosporales) (Hyde et al., 2020). To date, four species are accepted in this genus (Hyde et al., 2020; Yang et al., 2022; Xu et al., 2023), among which, P. dispersa, has been reported from a freshwater habitat (Xu et al., 2023).

Pleopunctum belonging to Phaeoseptaceae (Pleosporales) was introduced by Liu et al. (2019) based on the type species Pl. ellipsoideum, along with Pl. pseudoellipsoideum. Seven species were included in Pleopunctum, of which three species, viz. Pl. megalosporum, Pl. multicellularum and Pl. rotundatum were reported from freshwater habitats (Xu et al., 2023). The sexual morph of Pleopunctum has not been reported, and its asexual morph is characterized by sporodochial conidiomata, oval to ellipsoidal, brown, muriform conidia often with one or several hyaline, globose to ellipsoidal basal cells (Liu et al., 2019; Phukhamsakda et al., 2020; Boonmee et al., 2021; Senwanna et al., 2021; Wanasinghe et al., 2022; Xu et al., 2023). Hyaline phragmosporous or dictyosporous conidia have also been reported in this genus (Phukhamsakda et al., 2020; Senwanna et al., 2021; Wanasinghe et al., 2022).

Sparticola was introduced by Phukhamsakda et al. (2016) to accommodate S. forlicesenae, S. junci (type species) and S. triseptata. A fourth species, S. muriformis, was introduced by Karunarathna et al. (2017). All four of these terrestrial species have been found to exhibit sexual morphs in nature. Only S. junci produces a hyphomycetous asexual morph in culture, characterized by semi-macronematous to macronematous, pale brown to brown conidiophores, holoblastic conidiogenous cells, and irregular, brown to dark brown conidia (Phukhamsakda et al., 2016).

In this study, we introduce five new species collected from freshwater habitats in Guangxi, Guizhou and Hainan Provinces, China. Based on morphological characteristics and phylogenetic analyses, they are identified as Hermatomyces hainanensis sp. nov., Kirschsteiniothelia ramus sp. nov., Paramonodictys globosa sp. nov., Pleopunctum guizhouense sp. nov., and Sparticola irregularis sp. nov. Detailed descriptions and illustrations are provided for these five new taxa.

2 Materials and methods

2.1 Collections and examination of specimens

Fresh samples were collected from May 2021 to July 2022 in Guangxi, Guizhou and Hainan Provinces, China. The samples were incubated in moist plastic boxes at room temperature for 14 days. A Motic SMZ 168 Series dissecting microscope was used to check the specimen. Fruiting bodies of the new collections were examined and photographed with a Nikon ECLIPSE Ni compound microscope fitted with a Canon 90D digital camera. The software Tarosoft (R) Image Frame Work was used to take measurements of fungal structures, and Adobe Photoshop CC 2019 (Adobe Systems, USA) was used to prepare the photo-plates.

Single conidium isolations were carried out on potato dextrose agar (PDA) media (Senanayake et al., 2020). Germinated conidia were individually transferred to fresh PDA media plates and incubated in a constant temperature incubator at 25°C. Dried specimens were deposited in the Herbarium of Cryptogams, Kunming Institute of Botany Academia Sinica (HKAS), Kunming, China, and the herbarium of Guizhou Academic of Agriculture Sciences (GZAAS), Guiyang, China. Pure cultures were deposited in the Guizhou Culture Collection (GZCC), Guiyang, China. Fungal Names numbers were applied in Fungal Names (2023).1

2.2 DNA extraction, PCR amplification and sequencing

Genomic DNA was extracted from fresh mycelia growing on PDA medium for 1 month at 25°C using a DNA extraction kit (BioFlux, China). Four different gene regions, the nuclear large subunit rDNA (28S, LSU), the internal transcribed spacer (ITS), the translation elongation factor (tef1-α), and the RNA polymerase II subunit 2 (rpb2) were selected for study. Primer pairs LR0R/LR5 (Vilgalys and Hester, 1990), ITS5/ITS4 (White et al., 1990), EF1-983F/EF1-2218R (Rehner and Buckley, 2005) and fRPB2-5F/fRPB2-7cR (Liu et al., 1999) were used to amplify part of LSU, ITS, tef1-α and rpb2 loci, respectively. Polymerase chain reaction (PCR) was carried out in a 50 μL reaction volume containing 44 μL of 1.1 × T3 Supper PCR Mix (Qingke Biotech, China), 2 μL of forward and reverse primers, and 2 μL of DNA template. The PCR protocols were referred to Ma et al. (2023). And 1% agarose electrophoresis gels stained with ethidium bromide were used to examine the resulting PCR products. Successful PCR products were sequenced by Beijing Qingke Biotechnology Co., Ltd.

2.3 Phylogenetic analyses

Sequences obtained from different primers were analyzed with related taxa determined by blastn search in NCBI. Alignments for different gene loci were automatically performed by online MAFFT version 7.2 Trimal v1.2 (Capella-Gutierrez et al., 2009) was used to remove ambiguously aligned regions and uninformative positions with gappyout option. Multi-gene alignments were combined using SequenceMatrix 1.7.8 (Vaidya et al., 2011). Alignments were checked visually using AliView (Larsson, 2014). Sequences derived in this study were deposited in GenBank (Table 1).

Table 1

SpeciesStrain numberLSUITStef1-αrpb2tub2
Angustimassarina populiMFLUCC 13–0034KP888642KP899137KR075164NAN/A
Anteaglonium globosumANM 925.2GQ221879N/AGQ221925N/AN/A
Anteaglonium parvulumMFLUCC 14–0821KU922915N/AKU922921N/AN/A
Aquastroma magniostiolatumCBS 139680NG_056936LC014540AB808486N/AN/A
Corynespora cassiicolaCBS 100822GU301808N/AGU349052N/AN/A
Corynespora torulosaCPC 15989NG_058866NR_145181N/AN/AN/A
Decaisnella formosaBCC 25617GQ925847N/AGU479850N/AN/A
Decaisnella formosaBCC 25616GQ925846N/AGU479851N/AN/A
Exosporium stylobatumCBS 160.30JQ044447JQ044428N/AN/AN/A
Forliomyces uniseptataMFLUCC 15–0765KU721762KU721772N/AN/AN/A
Hermatomyces amphisporusCBS 146610LR812664LR812664N/AN/AN/A
Hermatomyces amphisporusCBS 146613LR812662LR812662LR812657LR812668LR812673
Hermatomyces amphisporusCBS 146614LR812666LR812666LR812660LR812671LR812676
Hermatomyces anomianthiMFLUCC 21–0202OK655817OL413437OM117546N/AN/A
Hermatomyces bauhiniaeMFLUCC 16–0395MK443378MK443382MK443384MK443386N/A
Hermatomyces biconisporusKUMCC 17–0183MH260296MH275063MH412771MH412755N/A
Hermatomyces bifurcatusCCF 5899LS398262LS398262LS398416LS398343LS398441
Hermatomyces bifurcatusCCF 5900LS398263LS398263LS398417LS398344LS398442
Hermatomyces clematidisMFLUCC 17–2085MT214556MT310603MT394735MT394684N/A
Hermatomyces constrictusCCF 5904LS398264LS398264LS398418LS398345LS398443
Hermatomyces indicusMFLUCC 14–1143KU764692KU144920KU872754KU712488N/A
Hermatomyces indicusMFLUCC 14–1144KU764693KU144921KU872755KU712489N/A
Hermatomyces iriomotensisKH 361LC194367LC194483LC194394LC194449N/A
Hermatomyces jinghaensisHKAS 112167MW989519MW989495MZ042642N/AN/A
Hermatomyces krabiensisMFLUCC 16–0249KX525742KX525750KX525758KX525754N/A
Hermatomyces krabiensisMFLUCC 16–2817KY559394N/AN/AN/AN/A
Hermatomyces hainanensisGZCC 23–0592OR091329OR098708N/AN/AN/A
Hermatomyces megasporusCCF 5897N/ALS398265LS398419LS398346LS398444
Hermatomyces megasporusCCF 5898LS398266LS398266LS398420N/ALS398445
Hermatomyces nabanheensisKUMCC 16–0149KY766059KY766058KY766061N/AN/A
Hermatomyces pandanicolaMFLUCC 16–0251KX525743KX525751KX525759KX525755N/A
Hermatomyces reticulatusCCF 5893LS398267LS398267LS398421LS398347LS398446
Hermatomyces reticulatusMFLUCC 15–0843KX259523KX259521KX259527KX259529N/A
Hermatomyces sphaericoidesCCF 5908LS398273LS398273LS398427LS398352LS398450
Hermatomyces sphaericoidesCCF 5895LS398270LS398270LS398424LS398350LS398447
Hermatomyces sphaericusPMA 116080LS398281LS398281LS398431LS398356LS398454
Hermatomyces sphaericusPMA 116081N/ALS398283LS398432LS398357LS398455
Hermatomyces sphaericusPRC 4105N/ALS398286N/AN/AN/A
Hermatomyces sphaericusPRC 4104N/ALS398278LS398430LS398355LS398453
Hermatomyces sphaericusKZP 462N/ALS398287LS398434LS398359LS398457
Hermatomyces sphaericusMFLUCC 16–2818KY559393N/AN/AN/AN/A
Hermatomyces sphaericusMFLUCC 16–0266KX525740KX525748KX525756KX525752N/A
Hermatomyces sphaericusMFLUCC 14–1140KU764695KU144917KU872757KU712486N/A
Hermatomyces trangensisBCC 80741KY790600KY790598KY790606KY790604N/A
Hermatomyces trangensisBCC 80742KY790601KY790599KY790607KY790605N/A
Hermatomyces tucumanensisCCF 5912LS398288LS398288LS398435LS398360LS398458
Hermatomyces tucumanensisCCF 5915LS398290LS398290LS398437LS398362N/A
Hermatomyces turbinatusMFLUCC 21–0038MW989518MW989494MZ042641MZ042638MZ042645
Hermatomyces verrucosusCCF 5903LS398292LS398292LS398439LS398364LS398462
Hermatomyces verrucosusCCF 5892LS398291LS398291LS398438LS398363LS398461
Kirschsteiniothelia acutisporaMFLU 21–0127ON980758OP120780N/AN/AN/A
Kirschsteiniothelia aethiopsCBS 109.53AY016361N/AN/AN/AN/A
Kirschsteiniothelia aethiopsMFLUCC 16–1104MH182589MH182583N/AN/AN/A
Kirschsteiniothelia aethiopsS-783MH182595MH182586N/AN/AN/A
Kirschsteiniothelia aethiopsMFLUCC 15–0424KU500578KU500571N/AN/AN/A
Kirschsteiniothelia aquaticaMFLUCC 17–1685MH182594MH182587N/AN/AN/A
Kirschsteiniothelia arasbaranicaIRAN 2509CKX621987KX621986N/AN/AN/A
Kirschsteiniothelia arasbaranicaIRAN 2508CKX621984KX621983N/AN/AN/A
Kirschsteiniothelia cangshanensisMFLUCC 16–1350MH182592MH182584N/AN/AN/A
Kirschsteiniothelia crustaceaMFLU 21–0129MW851854MW851849N/AN/AN/A
Kirschsteiniothelia dushanensisGZCC 19–0415N/AOP377845N/AN/AN/A
Kirschsteiniothelia extensaMFLU 21–0126ON980757OP120779N/AN/AN/A
Kirschsteiniothelia fluminicolaMFLUCC 16–1,263MH182588MH182582N/AN/AN/A
Kirschsteiniothelia lignicolaMFLUCC 10–0036HQ441568HQ441567N/AN/AN/A
Kirschsteiniothelia nabanheensisHJAUP C2004OQ023273OQ023197N/AN/AN/A
Kirschsteiniothelia nabanheensisHJAUP C2006OQ023275OQ023274N/AN/AN/A
Kirschsteiniothelia phoenicisMFLUCC 18–0216MG860484MG859978N/AN/AN/A
Kirschsteiniothelia ramusGZCC 23–0596OR091333OR098711OR494046OR494049N/A
Kirschsteiniothelia rostrataMFLUCC 15–0619KY697276KY697280N/AN/AN/A
Kirschsteiniothelia rostrataMFLUCC 16–1124MH182590N/AN/AN/AN/A
Kirschsteiniothelia septemseptataMFLU 21–0126ON980757OP120779N/AN/AN/A
Kirschsteiniothelia spatiosaMFLU 21–0128N/AOP077294N/AN/AN/A
Kirschsteiniothelia submersaMFLUCC 15–0427KU500577KU500570N/AN/AN/A
Kirschsteiniothelia submersaS-481MH182591N/AN/AN/AN/A
Kirschsteiniothelia submersaS-601MH182593MH182585N/AN/ANA
Kirschsteiniothelia tectonaeMFLUCC 12–0050KU764707KU144916N/AN/AN/A
Kirschsteiniothelia thailandicaMFLUCC 20–0116MT984443MT985633N/AN/AN/A
Kirschsteiniothelia thujinaJF 13210KM982718KM982716N/AN/AN/A
Kirschsteiniothelia xishuangbannaensisZHKUCC 22–0220OP303181OP289566N/AN/AN/A
Kirschsteiniothelia xishuangbannaensisZHKUCC 22–0221OP303182OP289563N/AN/AN/A
Lignosphaeria fusisporaMFLUCC 11–0377KP888646KP899140N/AN/AN/A
Lignosphaeria thailandicaMFLUCC 11–0376KP888645KP899139N/AN/AN/A
Lonicericola fuyuanensisMFLU 19–2,850NG_073809NR_172419MN938324N/AN/A
Lonicericola hyaloseptisporaKUMCC 18–0149NG_066434NR_164294N/AN/AN/A
Lonicericola qujingensisGMB 1386NG_154015NR_182717OM857556N/AN/A
Multilocularia bambusaeMFLUCC 11–0180NG_059654NR_148099KU705656N/AN/A
Multiseptospora thailandicaMFLUCC 11–0183NG_059554NR_148080KU705657N/AN/A
Multiseptospora thysanolaenaeMFLUCC 11–0202NG_059655NAKU705658N/AN/A
Neoaquastroma bauhiniaeMFLUCC 16–0398NG_067814NR_165217MH028247N/AN/A
Neoaquastroma guttulatumMFLUCC 14–0917KX949740KX949739KX949742N/AN/A
Parabambusicola aquaticaMFLUCC 18–1140NG_073791NR_171877N/AN/AN/A
Parabambusicola bambusinaMAFF 239462AB807536LC014578AB808511N/AN/A
Parabambusicola thysanolaenaeKUMCC 18–0147NG_066435NR_164044MK098209N/AN/A
Paradictyoarthrinium diffractumMFLUCC 12–0557KP744497KP744454N/AN/AN/A
Paradictyoarthrinium tectonicolaMFLUCC 12–0556KP744499KP744456N/AN/AN/A
Paramonodictys dispersaKUNCC 10788OQ146988ON261165OQ943185N/AN/A
Paramonodictys dispersaKUNCC 10782OQ146982ON261159OQ943183N/AN/A
Paramonodictys dispersaKUNCC 10783OQ146983ON261160OQ943184N/AN/A
Paramonodictys globosaGZCC 23–0594OR091331N/AOR494045OR494048N/A
Paramonodictys hongheensisKUMCC 21–0343NG_081549ON350762OL505582N/AN/A
Paramonodictys hongheensisKUMCC 21–0346OL436224OL436235OL505583N/AN/A
Paramonodictys solitariusGZCC 20–0007MN897835MN901152MT023012N/AN/A
Paramonodictys yunnanensisKUMCC 21–0337OL436226OL436231OL505585N/AN/A
Paramonodictys yunnanensisKUMCC 21–0347OL436228OL436233OL505586N/AN/A
Paratrimmatostroma kunmingenseKUN HKAS 102224MK098196MK098192MK098208N/AN/A
Phaeoseptum aquaticumCBS 123113JN644072N/AN/AN/AN/A
Phaeoseptum terricolaMFLUCC 10–0102MH105779N/AMH105781N/AN/A
Phyllobathelium anomalumMPN 242GU327722N/AN/AN/AN/A
Phyllobathelium firmumERP 3175GU327723N/AN/AN/AN/A
Pleopunctum bauhiniaeMFLUCC 17–2091NG_073849NR_170810MT394632N/AN/A
Pleopunctum ellipsoideumMFLU 19–0685MK804517MK804512MK828510N/AN/A
Pleopunctum guizhouenseGZCC 23–0595OR091332OR098710N/AN/AN/A
Pleopunctum heveaeMFLUCC 21-0146aOL782070OL780491N/AN/AN/A
Pleopunctum heveaeMFLUCC 21-0146bOL782071OL780492N/AN/AN/A
Pleopunctum megalosporumKUNCC 10785OQ146985ON261162OQ943186N/AN/A
Pleopunctum megalosporumKUNCC 10442OQ146986OQ135180OQ943187N/AN/A
Pleopunctum menglaenseKUMCC 21–0025ON009102ON009118ON009261N/AN/A
Pleopunctum menglaenseKUMCC 21–0026ON009103ON009119ON009262N/AN/A
Pleopunctum multicellularumKUNCC 10789OQ146989ON261166OQ943190N/AN/A
Pleopunctum multicellularumKUNCC 10781OQ146981ON261158OQ943189N/AN/A
Pleopunctum multicellularumKUNCC 10778OQ146978ON261155N/AN/AN/A
Pleopunctum pseudoellipsoideumMFLU 19–0686MK804518MK804513MK828511N/AN/A
Pleopunctum pseudoellipsoideumKUMCC 21–0820ON009100ON009116ON009259N/AN/A
Pleopunctum pseudoellipsoideumHKAS122915ON009101ON009117ON009260N/AN/A
Pleopunctum rotundatumKUNCC 10787OQ146987ON261164OQ943194N/AN/A
Pleopunctum rotundatumKUNCC 10780OQ146980ON261157OQ943193N/AN/A
Pleopunctum thailandicumMFLUCC 21–0039MZ198896MZ198894MZ172461N/AN/A
Preussia flanaganiiCBS 112.73NG_064098NR_077168N/AN/AN/A
Preussia funiculataCBS 659.74GU301864N/AN/AN/AN/A
Preussia lignicolaCBS 363.69DQ384098GQ203783N/AN/AN/A
Preussia lignicolaCBS 264.69GU301872N/AN/AN/AN/A
Preussia minimaCBS 524.50MH868263MH856741N/AN/AN/A
Preussia sp.ELV3.11KF269205JN418774N/AN/AN/A
Preussia sp.ELV3.2KF269206JN418773N/AN/AN/A
Pseudomonodictys aquaticaMFLUCC 22–0018ON553406ON561291ON556673N/AN/A
Pseudomonodictys tectonaeMFLUCC 12–0552NG_059590N/AKT285571N/AN/A
Sparticola forlicesenaeMFLUCC 14–1097KU721763KU721773N/AN/AN/A
Sparticola forlicesenaeMFLUCC 14–0952KU721764KU721774N/AN/AN/A
Sparticola junciMFLUCC 15–0030KU721765KU721775N/AN/AN/A
Sparticola junciMFLUCC 13–0926KU721766KU721776N/AN/AN/A
Sparticola muriformisMFLUCC 17–0316KY768862KY768864N/AN/AN/A
Sparticola triseptataCBS 614.86EF165031N/AN/AN/AN/A
Sporormia fimetariaUPS:Lundqvist 2302cGQ203728GQ203768N/AN/AN/A
Sporormia fimetariaUPS:dissing Gr.81.194GQ203729GQ203769N/AN/AN/A
Sparticola irregularisGZCC 23–0593OR091330OR098709OR494044OR494047N/A
Sporormurispora atraphaxidisMFLUCC 17–0742MG829083MG828971N/AN/AN/A
Sporormurispora pruniMFLUCC 17–0803MG829084MG828972N/AN/AN/A
Thyridaria macrostomoidesGKM1033GU385190N/AGU327776N/AN/A
Thyridaria macrostomoidesGKM1159GU385185N/AGU327778N/AN/A
Thyridaria macrostomoidesGKM224NGU385191N/AGU327777N/AN/A
Trichophoma cylindrosporaCBS 146340LR732024LR732023N/AN/AN/A
Westerdykella angulataCBS 610.74NG_057754NR_155956N/AN/AN/A
Westerdykella dispersaCBS 297.56NG_057827NR_111187N/AN/AN/A
Westerdykella ornataCBS 379.55MH869059MH857522N/AN/AN/A
Xenomonodictys iranicaCBS 147181MW175406MW175368N/AN/AN/A

Taxa used in this study and GenBank accession numbers.

Newly generated sequences are indicated in bold. *N/A, data not available in GenBank.

Maximum likelihood (ML) analyses were performed using IQ-TREE web server (Trifinopoulos et al., 2016). Substitution model was automatically tested. Ultrafast bootstrap (BS) analysis was implemented with 1,000 replicates. Maximum likelihood bootstrap values (ML-BS) equal or greater than 75% are marked near each node.

Bayesian inference (BI) analyses were carried out in MrBayes 3.2.6 (Ronquist et al., 2012) using a Markov Chain Monte Carlo (MCMC) algorithm. The best-fit substitution model GRT + I + G was decided for all four gene regions by MrModeltest 2.3 (Nylander, 2008) under the Akaike Information Criterion (AIC). Two parallel runs of four simultaneous Markov chains were performed for 1,000,000 generations. Trees were sampled every 1,000th generations. Burn-in phase was set at 25% and the remaining trees were used for calculating posterior probabilities (PP). PP values equal or greater than 0.95 are marked near each node.

Trees were visualized with FigTree v1.4.4,3 and the layouts were edited using Adobe Illustrator CS6 software (Adobe Systems, USA).

3 Taxonomy

Hermatomyces hainanensis J. Ma, Y.Z. Zhang & Y.Z. Lu, sp. nov., Figure 1.

Figure 1

Fungal Names number: FN571666.

Holotype: HKAS 129170.

Etymology: Referring to the location where the species was collected.

Saprobic on decaying wood in freshwater habitat. Sexual morph: Undetermined. Asexual morph: hyphomycetous. Colonies on natural substrate sporodochial, effuse, scattered, circular or subcircular, consisting of a brown sterile mycelial outer zone and an abundantly sporulating, dark brown to blackish brown center. Mycelium partly immersed, partly superficial, composed of pale to brown, branched, septate hyphae. Conidiophores 15–19 × 2–5 μm ( = 48 × 32 μm, n = 15), micronematous to semi-macronematous, unevenly cylindrical, geniculate, subhyaline to brown, septate, thick-walled. Conidiogenous cells 4.5–8 × 2.5–3 μm ( = 6.5 × 2.5 μm, n = 15), monoblastic, integrated, terminal, subcylindrical, subhyaline to pale brown. Conidia dimorphic, (1) cylindrical conidia 51–67 × 16–24 μm ( = 58.5 × 21 μm, n = 30), hyaline to subhyaline, often with a distinct dark brown pigmentation from the top downwards or at rim of the conidia, straight or broadly curved, phragmoseptate or muriform, sometimes with oblique septa, constricted at the septa, consisting of two columns from one or two basal cells, rounded at the apex; (2) lenticular conidia 44–52 × 29–39 μm ( = 48 × 32 μm, n = 30), ellipsoidal in front view, central cells dark brown to blackish brown, peripheral cells subhyaline to pale olivaceous brown, forming a distinct ring, muriform, constricted at the septa, smooth-walled, side views not observed.

Culture characteristics: Conidia were germinated on PDA medium and produced germ tubes within 18 h. Colonies grown on PDA are pale brown to brown, circular, surface flat, edge entire, reaching 36 mm diam. in 42 days at 25°C.

Material examined: China, Hainan Province, Qiongzhong Li and Miao Autonomous County, Baihualing Rainforest cultural tourism area, 18°98′ N, 109°82′ E, on rotting wood in a freshwater stream, 29 December 2021, Jian Ma, BH39 (HKAS 129170, holotype; GZAAS 23–0595, isotype), ex-type living culture GZCC 23-0592.

Notes: Hermatomyces hainanensis is similar to other Hermatomyces species with dimorphic conidia, such as H. bifurcatus, H. constrictus, H. iriomotensis, H. jinghaensis, H. krabiensis, H. megaspores, H. tucumanensis, and H. turbinatus (Chang, 1995; Tibpromma et al., 2016, 2017; Hashimoto et al., 2017; Koukol et al., 2018; Ren et al., 2021). Based on phylogenetic analyses, Hermatomyces hainanensis (GZCC 23-0592) is closely related to H. megasporus (CCF 5897 and CCF 5898) and H. reticulatus (CCF 5893 and MFLUCC 15-0843), although H. reticulatus only exhibits one type of conidia (Koukol et al., 2018). Despite some overlap in the sizes of the cylindrical (51–67 × 16–24 μm vs. 49.5–60.5 × 18–28 μm) and lenticular (44–52 × 29–39 μm vs. 49–56 × 37–46 μm) conidia of Hermatomyces hainanensis and H. megasporus (Koukol et al., 2018), the phylogenetic analyses suggest that they are distinct species (Figure 2). Comparisons of ITS sequences showed that there are 22 bp (in a total 886 bp, 2.5%) differences with 2 gaps between H. hainanensis (GZCC 23-0592) and H. megasporus (CCF 5898), and 10 bp (in a total 444 bp, 2.3%) differences with 1 gap between H. reticulatus (CCF 5893). Following the guidelines for species delineation (Jeewon and Hyde, 2016), we identify our collection as a new species.

Figure 2

Kirschsteiniothelia ramus J. Ma, Y.Z. Zhang & Y.Z. Lu, sp. nov., Figure 3.

Figure 3

Fungal Names number: FN571667.

Holotype: HKAS 129167.

Etymology: Referring to the apically branched conidiophores.

Saprobic on decaying wood in freshwater habitat. Sexual morph: Undetermined. Asexual morph: hyphomycetous. Colonies on natural substrate effuse, dark brown, gregarious, velvety. Mycelium mostly immersed, composed of gray to brown, branched, septate hyphae. Conidiophores 102–248 × 5–11 μm ( = 174 × 8.5 μm, n = 15), macronematous, mononematous, erect, straight or flexuous, cylindrical, brown, slightly paler toward the apex, simple or mostly apically branched, septate, thick-walled. Conidiogenous cells 18–27 × 6.5–9 μm ( = 22.5 × 8 μm, n = 30), monotretic, integrated, terminal at the apex of stipe and fertile branches, pale brown to brown, doliiform or lageniform. Conidia 42–56 × 15–22 μm ( = 49.5 × 19.5 μm, n = 30), acrogenous, solitary, cylindrical, rounded at the apex, subtruncate at the base, pale olivaceous when young, brown when mature, 2–3-septate, with septa thickened and darkened, verruculose.

Culture characteristics: Conidia were germinated on PDA medium and produced germ tubes within 24 h. Colonies grown on PDA are gray to olivaceous, circular, surface flat, edge entire, reaching 20 mm diam. in 28 days at 25°C.

Material examined: China, Hainan Province, Yanoda Tropical rainforest scenic area, on submerged decaying wood in a freshwater stream, 23 October 2021, Jian Ma, Y13 (HKAS 129167, holotype; GZAAS 23-0599, isotype), ex-type living culture, GZCC 23-0596.

Notes: Kirschsteiniothelia ramus resembles other Kirschsteiniothelia species with dendryphiopsis-like asexual morphs (Sun et al., 2021). Phylogenetically (Figure 4), Kirschsteiniothelia ramus (GZCC 23-0596) is a sister taxon to K. lignicola (MFLUCC 10-0036). However, K. ramus has larger conidiophores (102–248 × 5–11 μm vs. 39–148 × 4–7 μm) and larger conidia (42–56 × 15–22 μm vs. 24.5–35 × 14–16 μm) than K. lignicola (Boonmee et al., 2012). Besides, conidia of K. ramus are 2–3-septate, while the latter is 1–2-septate (Boonmee et al., 2012). Furthermore, the ITS (471 bp) sequence variation between K. ramus (GZCC 23-0596) and K. lignicola (MFLUCC 10–0036) occurs in 31 positions, including 5 gaps. Therefore, we introduce Kirschsteiniothelia ramus as a new species.

Figure 4

Paramonodictys globosa J. Ma, Y.Z. Zhang & Y.Z. Lu, sp. nov., Figure 5.

Figure 5

Fungal Names number: FN571668.

Holotype: HKAS 129169.

Etymology: Referring to the globose conidia.

Saprobic on decaying wood in freshwater habitat. Sexual morph: Undetermined. Asexual morph: hyphomycetous. Colonies on natural substrate superficial, effuse, scattered, black. Mycelium mostly immersed, composed of pale brown to brown, branched, septate hyphae. Stroma not observed. Conidiophores absent. Conidiogenous cells monoblastic. Conidia 34–65 × 24–60 μm ( = 54 × 46 μm, n = 30), solitary, globose to subglobose or irregular, usually broadly rounded at apex, subtruncate at base, olivaceous brown to dark brown, muriform, thickened and darkened at the septa, verrucous.

Culture characteristics: Conidia were germinated on PDA media and produced germ tubes within 24 h. Colonies grown on PDA are pale brown to brown, circular, surface umbonate, edge undulate, reaching 55 mm diam. in 42 days at 25°C.

Material examined: China, Guangxi Zhuang Autonomous Region, Hechi City, Nandan County, Pingzhou, on submerged decaying wood in a freshwater stream, 1 May 2021, Jian Ma, ND22 (HKAS 129169, holotype; GZAAS 23-0597, isotype), ex-type living culture, GZCC 23-0594.

Notes: A comparison of conidial sizes and shapes for the five accepted Paramonodictys species is provided in Table 2. The conidia of Paramonodictys globosa are larger than those of P. hongheensis. However, P. globosa has a similar conidial size to P. dispersa, P. solitarius and P. yunnanensis, meaning they cannot be distinguished based on morphology alone. In our phylogenetic analyses, P. globosa (GZCC 23-0594) formed a basal clade within the Paramonodictys group (Figure 6), indicating it is phylogenetically distinct. Therefore, we introduce Paramonodictys globosa as a new species based on both morphological and molecular evidence.

Table 2

SpeciesConidial sizeConidial shapeReferences
Paramonodictys dispersa52–61 × 35–43 μmSubglobose to ellipticalXu et al. (2023)
Paramonodictys globosa34–65 × 24–60 μmGlobose to subglobose or irregularThis study
Paramonodictys hongheensis19–26 × 19–22 μmSubglobose to ovalYang et al. (2022)
Paramonodictys solitarius50–87 × 40–61 μmGlobose or subgloboseHyde et al. (2020)
Paramonodictys yunnanensis47–70 × 35–47 μmObovoid to subgloboseYang et al. (2022)

Conidial size of accepted Paramonodictys species.

Figure 6

Pleopunctum guizhouense J. Ma, N.G. Liu & Y.Z. Lu, sp. nov., Figure 7.

Figure 7

Fungal Names number: FN571669.

Holotype: HKAS 129171.

Etymology: Referring to the location where the species was collected.

Saprobic on decaying wood in freshwater habitat. Sexual morph: Undetermined. Asexual morph: hyphomycetous. Colonies on natural substrate superficial, brown, sporodochial, punctiform. Mycelium mostly immersed, composed of hyaline to pale brown, branched, septate hyphae. Conidiophores macronematous, mononematous, cylindrical, medium brown, simple or branched, septate, thick-walled. Conidiogenous cells monoblastic, integrated, terminal, medium brown. Conidia 45–64 × 26–29.5 μm ( = 57 × 28 μm, n = 30), acrogenous, solitary, oval to ellipsoidal, broadly obtuse at apex, truncate at base, median brown, darker at the apex, muriform, constricted at septa, smooth-walled, often with a hyaline, ellipsoidal to globose basal cell, 16–26 × 11–17 μm ( = 20 × 13.5 μm, n = 30).

Culture characteristics: Conidia were germinated on PDA media and produced germ tubes within 12 h. Colonies grown on PDA are white to pale brown in front view and brown in reverse view, circular, surface umbonate, edge undulate, reaching 35 mm diam. in 28 days at 25°C.

Material examined: China, Guizhou Province, Chishui City, Swan Castle Forest Park, on submerged decaying wood in a freshwater stream, 28 July 2022, Jian Ma, TEB11.1 (HKAS 129171, holotype; GZAAS23-0598, isotype), ex-type living culture, GZCC 23-0595.

Notes: Pleopunctum guizhouense (GZCC 23-0595) clusters together with Pl. menglaense (KUMCC 21-0025 and KUMCC 21-0026) with a weak support in the phylogenetic analyses (Figure 8). However, it can be differentiated from Pl. menglaense by its monomorphic conidia, which are brown and oval to ellipsoidal with a basal cell, while the latter has two types of conidia: spatulate to obovate, hyaline conidia, and brown, ellipsoidal to oblong conidia with 1–3 basal cells (Wanasinghe et al., 2022). The ITS (464 bp) sequence variation between Pl. guizhouense (GZCC 23-0595) and Pl. menglaense (KUMCC 21-0026) occurs in 16 positions, including 5 gaps. Considering these morphological differences and their distinct phylogenetic positions, we introduce our collection as a new species, named Pleopunctum guizhouense.

Figure 8

Sparticola irregularis J. Ma, N.G. Liu & Y.Z. Lu, sp. nov., Figure 9.

Figure 9

Fungal Names number: FN571670.

Holotype: HKAS 129168.

Etymology: Referring to the irregular conidia.

Saprobic on decaying wood in freshwater habitat. Sexual morph: Undetermined. Asexual morph: hyphomycetous. Colonies on natural substrate effuse, black, velvety. Mycelium mostly immersed, composed of pale gray to pale brown, branched, septate hyphae. Conidiophores 97–162 × 9–11.5 μm ( = 127 × 10.5 μm, n = 15), macronematous, mononematous, erect, subcylindrical, sometimes with doliiform cells at upper part, dark brown and wider at base, paler and thinner toward to the apex, simple, occasionally branched, septate, thick-walled. Conidiogenous cells 11–15 × 5–6 μm ( = 13 × 5.5 μm, n = 15), monoblastic, integrated, terminal, subcylindrical or doliiform, brown. Conidia 33–53 × 33–51 μm ( = 45 × 40 μm, n = 30), acrogenous, solitary, irregular, brown to dark brown, muriform, with protuberant, truncate base.

Culture characteristics: Conidia were germinated on PDA media and produced germ tubes within 12 h. Colonies grown on PDA are gray to pale brown, irregular, surface flat, edge filiform, reaching 54 mm diam. in 42 days at 25°C.

Material examined: China, Hainan Province, Haikou City, Xiuying District, Ecological leisure trail, on decaying wood in a freshwater stream, 20°01′ N, 110°25′ E, 10 August 2021, Jian Ma, HK7 (HKAS 129168, holotype; GZAAS23-0596, isotype), ex-type living culture GZCC 23-0593.

Notes: Sparticola species are typically identified by their sexual morphology (Phukhamsakda et al., 2016; Karunarathna et al., 2017). Sparticola junci is the only species known to produce a hyphomycetous asexual morphology in culture, which is similar to that of our new collection in terms of conidial morphology (Phukhamsakda et al., 2016). Although our collection has larger conidiophores (97–162 × 9–11.5 μm vs. up to 35 × 4–7 μm) than those of S. junci, this difference might be attributed to variations in growth conditions (nature vs. culture). Unfortunately, we were unable to observe sporulation in our culture. Phylogenetically (Figure 10), Sparticola irregularis (GZCC 23-0593) forms a basal clade to the Sparticola group (ML-BS = 74%, PP = 0.93), and could represent a new genus because the LSU (823 bp) sequences comparison between S. irregularis (GZCC 23-0593) and S. junci (MFLUCC 15-0030) shows there are 28 position differences, including 2 gaps. However, considering that we only have one isolate, the evidence is insufficient to propose a new genus. Thus, we provisionally assign our new collection to Sparticola and introduce the new species Sparticola irregularis. Further fresh collections of Sparticola species or the discovery of the sexual morphology of S. irregularis may provide better resolution for its taxonomic identification.

Figure 10

4 Discussion

In this study, we introduce five new species, namely Hermatomyces hainanensis, Kirschsteiniothelia ramus, Paramonodictys globosa, Pleopunctum guizhouense, and Sparticola irregularis. The discovery of these five new taxa enriches the freshwater fungi resources of China and further reveals the diverse morphology for this group of fungi. Hermatomyces, Kirschsteiniothelia, Paramonodictys and Pleopunctum have been reported from both terrestrial and freshwater habitats (Sun et al., 2021; Calabon et al., 2022; Xu et al., 2023). Among them, Hermatomyces and Kirschsteiniothelia have a worldwide distribution, while Pleopunctum are reported from China and Thailand (Liu et al., 2019; Phukhamsakda et al., 2020; Senwanna et al., 2021; Xu et al., 2023). To date, all published Paramonodictys species are described from China (Hyde et al., 2020; Yang et al., 2022; Xu et al., 2023). However, occurring at different altitudes suggests that Paramonodictys is highly adaptable to different environments and thus may also exist in other countries. Sparticola species mainly occur in Europe except for S. muriformis from China (Phukhamsakda et al., 2016; Karunarathna et al., 2017). In this study, we report Sparticola from freshwater habitat for the first time.

The classification of species in Hermatomyces, particularly H. sphaericus, has been widely debated. Koukol et al. (2018) considered H. chromolaenae, H. saikhuensis and H. tectonae as synonyms for H. sphaericus, a species that they regarded as monomorphic. Using the GCPSR method, Phukhamsakda et al. (2020) further supported this conclusion. Conversely, Tibpromma et al. (2018) identified H. biconisporus as a distinct species that produces two types of conidia, and clusters within H. sphaericus clade. They rejected Koukol’s treatment and suggested that H. sphaericus might be a species complex. The taxonomic statuses of two other species in the H. sphaericus clade, H. biconisporus and H. pandanicola, remain unresolved. However, Koukol and Delgado (2019) speculated that contamination during single spore isolation may have led to a mixture of conidia from H. sphaericus and H. biconisporus, while H. pandanicola might be a hybrid species, or the sequences in GenBank could have been provided erroneously (Koukol et al., 2018). Therefore, it is essential to collect fresh samples of H. biconisporus and H. pandanicola to resolve their taxonomic controversies.

Statements

Data availability statement

The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/supplementary material.

Author contributions

JM provided the research materials. Y-ZZ and JM contributed to the methodology. N-GL performed the phylogenetic analyses. Y-ZZ, Q-LC, and N-GL wrote the original draft. Y-ZL, H-BC, and N-GL reviewed the draft. All authors contributed to manuscript revision, read, and approved the submitted version.

Funding

This study was supported by the Guizhou Province, Science and Technology Department, Natural Science Fund, Qiankehe Grant No. [2018]1071 and the Guizhou University of Traditional Chinese Medicine, National Nature Supply Fund, Grant No. 2018YFC170810501, and the Innovation and Technology Fund in Hong Kong (MHP/023/20).

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

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Summary

Keywords

5 new taxa, asexual morph, biodiversity, morphology, phylogeny

Citation

Zhang Y-Z, Chen Q-L, Ma J, Lu Y-Z, Chen H-B and Liu N-G (2023) Morphological and multi-gene phylogenetic analyses reveal five new hyphomycetes from freshwater habitats. Front. Microbiol. 14:1253239. doi: 10.3389/fmicb.2023.1253239

Received

05 July 2023

Accepted

06 November 2023

Published

05 December 2023

Volume

14 - 2023

Edited by

Dian-Ming Hu, Jiangxi Agricultural University, China

Reviewed by

Saowaluck Tibpromma, Qujing Normal University, China; Mingkwan Doilom, Zhongkai University of Agriculture and Engineering, China

Updates

Copyright

*Correspondence: Ya-Zhou Zhang, Ning-Guo Liu,

†These authors have contributed equally to this work

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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