This article is a correction to:
Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera
Amaraja Joshi
Sonia Thite
Tushar Lodhaby Joshi, A., Thite, S., Karodi, P., Joseph, N., and Lodha, T. (2021). Front. Microbiol. 12:722369. doi: 10.3389/fmicb.2021.722369
In the original article, there was a mistake in the description of the new combinations in the newly proposed genus (Table 5). Culture collection number for Alkalihalobacterium bogoriense was given as MG 22234 in the original manuscript. It is changed to LMG 22234. The strain number for the type strain Alkalihalobacillus okhensis was incorrect. The corrected Table 5 appears below.
TABLE 5
Table 5. Description of the new combinations in the newly proposed genus.
In the original article, there was an error in the naming of a family species, Bacilla was written where it should be Bacillaceae. A correction has been made to Materials and Methods, Genome Sequences Used in This Study and Pathway Analysis, paragraph one:
“Type strains of 41 species of the genus Alkalihalobacillus (28 type strains), Desertibacillus, and Anaerobacillus and type species of the different genera of the family Bacillaceae, whose genomes were available in the public database, were considered in this study. Fifty genomes of non-type strains of genus Alkalihalobacillus were also included in this study. Streptococcus gordonii ATCC 10558T and Streptococcus agalactiae ATCC 13813T genomes were used to root (outgroup) the phylogenetic tree. The genome of strain MEB199T and Desertibacillus haloalkaliphilus KJ1-10-99T were sequenced under this study, and all the other genomes were downloaded from the PATRIC database (Supplementary Table 1). The functional annotations of each genome was carried out using EggNOG-mapper v2 (Cantalapiedra et al., 2021). The pathway was mapped using the KEGG Orthology (KO) Database3 for all the selected genomes. Heatmap to visualize the distribution of pathways across all the members of the genus Alkalihalobacillus was constructed using heatmapper.4”
The authors apologize for these errors and state that this does not change the scientific conclusions of the article in any way.
Publisher's Note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Footnotes
References
Borchert, M. S., Nielsen, P., Graeber, I., Kaesler, I., Szewzyk, U., Pape, T., et al. (2007). Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6. Int. J. Syst. Evol. Microbiol. 57, 2888–2893. doi: 10.1099/ijs.0.65177-0
Borsodi, A. K., Pollak, B., Keki, Z., Rusznyak, A., Kovacs, A. L., Spröer, C., et al. (2011). Bacillus alkalisediminis sp. nov., an alkaliphilic and moderately halophilic bacterium isolated from sediment of extremely shallow soda ponds. Int. J. Syst. Evol. Microbiol. 61, 1880–1886. doi: 10.1099/ijs.0.019489-0
Borsodi, A. K., Toth, E., Aszalos, J. M., Barany, A., Schumann, P., Sproer, C., et al. (2017). Bacillus kiskunsagensis sp. nov., a novel alkaliphilic and moderately halophilic bacterium isolated from soda soil. Int. J. Syst. Evol. Microbiol. 67, 3490–3495. doi: 10.1099/ijsem.0.002149
Boyer, E. W., Ingle, M., and Mercer, G. D. (1973). Bacillus alcalophilus subsp. halodurans subsp. nov.: an alkaline amylase producing alkalophilic organism. Int. J. Syst. Bacteriol. 23, 238–242. doi: 10.1099/00207713-23-3-238
Cantalapiedra, C. P., Hernández-Plaza, A., Letunic, I., Bork, P., and Huerta-Cepas, J. (2021). eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale. bioRxiv [Preprint]. doi: 10.1101/2021.06.03.446934
Chen, Y. G., Zhang, Y. Q., Chen, Q. H., Klenk, H., He, J. W., Tang, S. K., et al. (2011b). Bacillus xiaoxiensis sp. nov., a slightly halophilic bacterium isolated from non-saline forest soil. Int. J. Syst. Evol. Microbiol. 61, 2095–2100. doi: 10.1099/ijs.0.026286-0
Chen, Y. G., Zhang, Y. Q., He, J. W., Klenk, H. P., Xiao, J. Q., Zhu, H. Y., et al. (2011a). Bacillus hemicentroti sp. nov., a moderate halophile isolated from a sea urchin. Int. J. Syst. Evol. Microbiol. 61, 2950–2955. doi: 10.1099/ijs.0.026732-0
Denizci, A. A., Kazan, D., and Erarslan, A. (2010). Bacillus marmarensis sp. nov.,an alkaliphilic, protease-producing bacterium isolated from mushroom compost. Int. J. Syst. Evol. Microbiol. 60, 1590–1594. doi: 10.1099/ijs.0.012369-0
Dou, G., Liu, H., He, W., and Ma, Y. (2016). Bacillus lindianensis sp. nov., a novel alkaliphilic and moderately halotolerant bacterium isolated from saline and alkaline soils. Antonie van Leeuwenhoek 109, 149–158. doi: 10.1007/s10482-015-0616-y
Ghosh, A., Bhardwaj, M., Satyanarayana, T., Khurana, M., Mayilraj, S., and Jain, R. K. (2007). Bacillus lehensis sp. nov., an alkalitolerant bacterium isolated from soil. Int. J. Syst. Evol. Microbiol. 57, 238–242. doi: 10.1099/ijs.0.64617-0
Gupta, R. S., Patel, S., Saini, N., and Chen, S. (2020). Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the subtilis and cereus clades of species. Int. J. Syst. Evol. Microbiol. 70, 5753–5798. doi: 10.1099/ijsem.0.004475
Heyrman, J., Balcaen, A., Rodriguez-Diaz, M., Logan, N. A., Swings, J., and De Vos, P. (2003). Bacillus decolorationis sp. nov., isolated from biodeteriorated parts of the mural paintings at the servilia tomb (Roman necropolis of Carmona, Spain) and the saint-catherine chapel (Castle Herberstein, Austria). Int. J. Syst. Evol. Microbiol. 53, 459–463. doi: 10.1099/ijs.0.02452-0
Ivanova, E. P., Alexeeva, Y. A., Zhukova, N. V., Gorshkova, N. M., Buljan, V., Nicolau, D. V., et al. (2004). Bacillus algicola sp. nov., a novel filamentous organism isolated from brown alga Fucus evanescens. Syst. Appl. Microbiol. 27, 301–307. doi: 10.1078/0723-2020-00269
Lei, Z., Qiu, P., Ye, R., Tian, J., Liu, Y., Wang, L., et al. (2014). Bacillus Shacheensis sp. nov.,a moderately halophilic bacterium isolated from a saline-alkalisoil. J. Gen. Appl. Microbiol. 60, 101–105. doi: 10.2323/jgam.60.101
Liu, B., Liu, G. H., Wang, X. Y., Wang, J. P., Chen, Z., Chen, M. C., et al. (2019). Bacillus urbisdiaboli sp. nov., isolated from soil sampled in Xinjiang. Int. J. Syst. Evol. Microbiol. 69, 1591–1596. doi: 10.1099/ijsem.0.003363
Madhaiyan, M., Poonguzhali, S., Lee, J. S., Lee, K. C., and Hari, K. (2011). Bacillus rhizosphaerae sp. nov., an novel diazotrophic bacterium isolated from sugarcane rhizosphere soil. Antonie van Leeuwenhoek 100, 437–444. doi: 10.1007/s10482-011-9600-3
Mo, K., Huang, H., Bao, S., and Hu, Y. (2020). Bacillus caeni sp. nov., isolated from mangrove sediment. Int. J. Syst. Evol. Microbiol. 70, 1503–1507. doi: 10.1099/ijsem.0.003853
Nedashkovskaya, O. I., Van Trappen, S., Frolova, G. M., and De Vos, P. (2012). Bacillus berkeleyi sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Arch. Microbiol. 194, 215–221. doi: 10.1007/s00203-011-0771-0
Nielsen, P., Fritze, D., and Priest, F. G. (1995). Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. Microbiology 141, 1745–1761. doi: 10.1099/13500872-141-7-1745
Nogi, Y., Takami, H., and Horikoshi, K. (2005). Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species. Int. J. Syst. Evol. Microbiol. 55, 2309–2315. doi: 10.1099/ijs.0.63649-0
Nowlan, B., Dodia, M. S., Singh, S. P., and Patel, B. K. C. (2006). Bacillus okhensis sp.nov., a halotolerant and alkalitolerant bacterium from an Indian saltpan. Int. J. Syst. Evol. Microbiol. 56, 1073–1077. doi: 10.1099/ijs.0.63861-0
Olivera, N., Siñeriz, F., and Breccia, J. D. (2005). Bacillus patagoniensis sp. nov.,a novel alkalitolerant bacterium from the rhizosphere of Atriplex lampa in Patagonia, Argentina. Int. J. Syst. Evol. Microbiol. 55, 443–447. doi: 10.1099/ijs.0.63348-0
Patel, S., and Gupta, R. S. (2020). A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. Int. J. Syst. Evol. Microbiol. 70, 406–438. doi: 10.1099/ijsem.0.003775
Reddy, S. V., Thirumala, M., Farooq, M., Sasikala, C., and Ramana, C. V. (2015). Bacillus lonarensis sp. nov., an alkalitolerant bacterium isolated from a soda lake. Arch. Microbiol. 197, 27–34. doi: 10.1007/s00203-014-1040-9
Santini, J. M., Streimann, I. C. A., and vanden Hoven, R. N. (2004). Bacillus macyae sp.nov., an arsenate-respiring bacterium isolated from an Australian gold mine. Int. J. Syst. Evol. Microbiol. 54, 2241–2244. doi: 10.1099/ijs.0.63059-0
Shin, B., Park, C., Lee, B. H., Lee, K. E., and Park, W. (2020). Bacillus miscanthi sp. nov., a alkaliphilic bacterium from the rhizosphere of Miscanthus sacchariflorus. Int. J. Syst. Evol. Microbiol. 70, 1843–1849. doi: 10.1099/ijsem.0.003982
Singh, H., Kaur, M., Sharma, S., Kaur, L., Mishra, S., Tanuku, N. R. S., et al. (2018). Bacillus alkalilacus sp. nov., isolated from a sediment sample from a lake in India. Int. J. Syst. Evol. Microbiol. 68, 1665–1671. doi: 10.1099/ijsem.0.002726
Song, L., Liu, H., Wang, J., Huang, Y., Dai, X., Han, X., et al. (2016). Bacillus oceani sp. nov., isolated from seawater. Int. J. Syst. Evol. Microbiol. 66, 796–800. doi: 10.1099/ijsem.0.000793
Sorokin, D. Y., van Pelt, S., and Tourova, T. P. (2008). Utilization of aliphatic nitriles under haloalkaline conditions by Bacillus alkalinitrilicus sp. nov. isolated from soda solonchak soil. FEMS Microbiol. Lett. 288, 235–240. doi: 10.1111/j.1574-6968.2008.01353.x
Vargas, V. A., Delgado, O. D., Hatti-Kaul, R., and Mattiasson, B. (2005). Bacillus bogoriensis sp. nov., a novel alkaliphilic, halotolerant bacterium isolated from a Kenyan soda lake. Int. J. Syst. Evol. Microbiol. 55, 899–902. doi: 10.1099/ijs.0.63318-0
Yoon, J. H., Kim, I. G., Kang, K. H., Oh, T. K., and Park, Y. H. (2004). Bacillus hwajinpoensis sp. nov. and an unnamed Bacillus genomospecies, novel members of Bacillus rRNA group 6 isolated from sea water of the East Sea and the Yellow Sea in Korea. Int. J. Syst. Evol. Microbiol. 54, 803–808. doi: 10.1099/ijs.0.02678-0
Yumoto, I., Hirota, K., Goto, T., Nodasaka, Y., and Nakajima, K. (2005). Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile. Int. J. Syst. Evol. Microbiol. 55, 907–911. doi: 10.1099/ijs.0.63488-0
Yumoto, I., Yamaga, S., Sogabe, Y., Nodasaka, Y., Matsuyama, H., and Nakajima, K. (2003). Bacillus krulwichiae sp. nov., a halotolerant obligate alkaliphile that utilizes benzoate and m-hydroxybenzoate. Int. J. Syst. Evol. Microbiol. 53, 1531–1536. doi: 10.1099/ijs.0.02596-0
Zhang, J., Wang, J., Song, F., Fang, C., Xin, Y., and Zhang, Y. (2011). Bacillus nanhaiisediminis sp. nov., an alkalitolerant member of Bacillus rRNA group 6. Int. J. Syst. Evol. Microbiol. 61, 1078–1083. doi: 10.1099/ijs.0.023671-0
Keywords: alkaliphilic bacteria, Alkalihalobacterium, Alkalihalobacillus, taxogenomic, Lonar lake, Shouchella, Halalkalibacterium, Halalkalibacter
Citation: Joshi A, Thite S, Karodi P, Joseph N and Lodha T (2022) Corrigendum: Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera. Front. Microbiol. 13:871596. doi: 10.3389/fmicb.2022.871596
Received: 08 February 2022; Accepted: 22 February 2022;
Published: 23 March 2022.
Edited by:
Iain Sutcliffe, Northumbria University, United KingdomReviewed by:
Aharon Oren, Hebrew University of Jerusalem, IsraelCopyright © 2022 Joshi, Thite, Karodi, Joseph and Lodha. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Tushar Lodha, tushar.lodha@nccs.res.in; Amaraja Joshi, amaraja@nccs.res.in
†These authors have contributed equally to this work