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ORIGINAL RESEARCH article

Front. Microbiol., 17 November 2022
Sec. Microbe and Virus Interactions with Plants
This article is part of the Research Topic Beneficial Microbe-Plant Interactions Under Biotic/Abiotic Stress Conditions View all 23 articles

Volatile organic compounds emitted by Burkholderia pyrrocinia CNUC9 trigger induced systemic salt tolerance in Arabidopsis thaliana

  • 1Department of Applied Biology, Chungnam National University, Daejeon, South Korea
  • 2Molecular Phytobacteriology Laboratory, Infectious Disease Research Center, KRIBB, Daejeon, South Korea

Salinity is among the most significant abiotic stresses that negatively affects plant growth and agricultural productivity worldwide. One ecofriendly tool for broadly improving plant tolerance to salt stress is the use of bio-inoculum with plant growth-promoting rhizobacteria (PGPR). In this study, a bacterium strain CNUC9, which was isolated from maize rhizosphere, showed several plant growth-promoting characteristics including the production of 1-aminocyclopropane-1-carboxylate deaminase, indole acetic acid, siderophore, and phosphate solubilization. Based on 16S rRNA and recA gene sequence analysis, we identified strain CNUC9 as Burkholderia pyrrocinia. Out of bacterial determinants to elicit plant physiological changes, we investigated the effects of volatile organic compounds (VOCs) produced by B. pyrrocinia CNUC9 on growth promotion and salinity tolerance in Arabidopsis thaliana. Higher germination and survival rates were observed after CNUC9 VOCs exposure under 100 mM NaCl stress. CNUC9 VOCs altered the root system architecture and total leaf area of A. thaliana compared to the control. A. thaliana exposed to VOCs induced salt tolerance by increasing its total soluble sugar and chlorophyll content. In addition, lower levels of reactive oxygen species, proline, and malondialdehyde were detected in CNUC9 VOCs-treated A. thaliana seedlings under stress conditions, indicating that VOCs emitted by CNUC9 protected the plant from oxidative damage induced by salt stress. VOC profiles were obtained through solid-phase microextraction and analyzed by gas chromatography coupled with mass spectrometry. Dimethyl disulfide (DMDS), methyl thioacetate, and 2-undecanone were identified as products of CNUC9. Our results indicate that optimal concentrations of DMDS and 2-undecanone promoted growth in A. thaliana seedlings. Our findings provide greater insight into the salt stress alleviation of VOCs produced by B. pyrrocinia CNUC9, as well as potential sustainable agriculture applications.

Introduction

Soil salinity is one of the most significant environmental constraints restricting seed germination, plant growth, and productivity worldwide, posing a serious threat to global food security (Mukhopadhyay et al., 2021). Globally, approximately 20% of agricultural areas and 33% of irrigated lands are negatively affected by soil salinity, and the salinization of irrigated land is predicted to increase by 50% by 2050 (Shrivastava and Kumar, 2015). Salinity adversely affects plant physiology, biochemistry, and metabolism that induces cellular osmotic imbalance, inhibited root growth, and alters root architecture, impairing the ability of plants to acquire water and nutrients (Nawaz et al., 2020). High salinity also induces the accumulation of reactive oxygen species (ROS), which are detrimental to cell viability, photosynthetic pigments, membrane lipid integrity, and phytohormone imbalance (Cappellari et al., 2020; Ali et al., 2022). Various strategies have been developed to mitigate the effects of soil salinity on crops, including the reclamation of saline soil and breeding salt-tolerant plant varieties through genetic engineering (Nawaz et al., 2020). However, these methods have not been widely accepted due to time and resource costs, as well as potential environmental risks (Hu et al., 2012). Therefore, the application of microorganisms that are beneficial to plants [e.g., plant growth-promoting rhizobacteria (PGPR)] has gained attention as an alternative sustainable agricultural approach to alleviating salt stress in crops.

PGPR are plant root-associated bacteria that improve plant growth and increase tolerance to various abiotic and biotic stresses (Ha Tran et al., 2021). The main mechanisms of growth and yield improvement are the production of growth regulators such as indole acetic acid (IAA), gibberellic acid, and cytokinins; processes increasing nutrient availability such as nitrogen fixation, phosphorous solubilization, and siderophore production; synthesis of 1-amino cyclopropane-1-carboxylic acid (ACC) deaminase; and secretion of exopolysaccharides (EPS) and antimicrobial secondary metabolites (Bhattacharyya and Jha, 2012; Gouda et al., 2018; Basu et al., 2021). In addition, volatile organic compounds (VOCs) produced by PGPR have been shown to enhance plant biomass, disease resistance, and abiotic stress tolerance (Farag et al., 2013; Fincheira and Quiroz, 2018; Fincheira et al., 2021).

VOCs emitted by plant-associated microorganisms are low-molecular-weight (<300 g mol−1) lipophilic compounds with a low boiling point and high vapor pressure. These characteristics allow them to act as signals via short-and long-distance dispersal in the rhizosphere, allowing indirect interactions between plants and microorganisms (Cordovez et al., 2018). Since the production of VOCs by rhizobacteria was first reported to trigger growth promotion in A. thaliana (Ryu et al., 2003), several studies have demonstrated that VOCs released from rhizobacteria such as Bacillus, Burkholderia, Enterobacter, Pseudomonas, Streptomyces, and Stenotrophomonas species can stimulate plant growth and induced systemic tolerance (IST) against abiotic stresses (Yang et al., 2009; Fincheira and Quiroz, 2018; Veselova et al., 2019; Cellini et al., 2021). Some studies reported that bacterial VOCs promote plant growth by influencing root architecture and growth, resulting in increased surface area for nutrient and water acquisition as well as other rhizosphere effects (Gutiérrez-Luna et al., 2010; Grover et al., 2021). The number of chloroplasts and chlorophyll content increase following exposure to Bacillus subtilis GB03 VOCs to A. thaliana, resulting in higher quantum efficiency, complex II photosynthetic efficiency, and effective quantum yield (Zhang et al., 2008). VOCs also regulate growth hormone redistribution, induce key defense mechanisms, and increase antioxidant enzyme accumulation (Kwon et al., 2010).

The Burkholderia cepacia complex (Bcc) is the primary cluster in the Burkholderia genus, and is found in diverse environmental niches (Meier-Kolthoff et al., 2022). Some Bcc species have been used as agricultural biocontrol agents or in toxin bioremediation (LiPuma and Mahenthiralingam, 1999). Bibi et al. (2022) reported that the application of B. cenocepacia as a bio-organic fertilizer increased the maize germination index, promptness index, and seedling vigor index by 32, 34, and 21%, respectively, compared to controls. B. phytofirmans strain PsJN enhances A. thaliana growth and salt tolerance throughout its life cycle, modifying ion transporters necessary for salt-stress tolerance (Pinedo et al., 2015). Sarkar et al. (2018) reported that Burkholderia sp. MTCC 12259 was tolerant to treatment with 1.2 M NaCl and produced IAA, EPS, and proline essential for rice seedling growth under salt stress. Subsequent studies have mainly focused on the antagonistic effects of B. pyrrocinia (Vandamme et al., 2002; Ren et al., 2011; de los Santos-Villalobos et al., 2012; Depoorter et al., 2016). However, the mechanisms of its VOCs-mediated growth promotion and IST in plants against abiotic stresses, particularly salt stress are currently limited.

In this study, we screened 24 bacterial isolates from maize rhizosphere, and selected one isolate that identified as B. pyrrocinia (strain CNUC9) has various plant growth promoting traits. Considering the potential role of bacterial VOCs in growth promotion and plant stress tolerance, we investigated the role of CNUC9 VOCs on plant biomass (vigor and morphological characteristics of leaf and root), and the mitigation of salt stress in A. thaliana. In addition, we evaluated stress-related biochemical changes in cellular solutes and ROS generation in A. thaliana under salt stress.

Materials and methods

Sample collection and rhizobacterium isolation

Rhizosphere soil samples were collected from roots of maize (Zea mays L.) grown in Gongju, South Korea (36°21′34.6”N 127°09′48.4″E), in 2020. Roots and adhered soil were manually separated from the surrounding bulk soil and collected into sterile polyethylene bags. To isolate rhizobacteria, roots were gently washed with tap water, and 5 g root tips were transferred to 50 ml 0.8% NaCl (w/v) solution. Bacteria were removed from root tips by vortexing and sonication three times each for 30 s. The suspension was serially diluted and each dilution was separately spread on nutrient agar (NA) plates. After 3 days of incubation at 28°C, bacterial colonies with different phenotypes were purified. Purified bacterial isolates were stored in 40% glycerol at −80°C and used for further study.

Screening of bacterial isolates for plant growth-promoting traits

To screen for phosphate solubilization, 10 μl each bacterial isolate was inoculated onto Pikovaskya’s agar medium containing tri-calcium phosphate as the mineral P (Pikovskaya, 1948) and incubated at 28°C for 4 days. Halo zone formation by the colonies was considered to indicate phosphate-solubilizing capacity. IAA production by bacterial strains was estimated in LB broth supplemented with L-tryptophan (100 mg/l) using the Salkowski reagent, which consisted of 0.5 M of FeCl3 in 70% HClO4 (Bric et al., 1991). The IAA concentration was determined from a standard curve of purified IAA (Daejung Chemicals and Metals Co. Ltd., Siheung, Korea). To screen for siderophore production, 10 μl each bacterial isolate was inoculated onto Chrome Azurol Sulphonate over-laid onto NA medium (Alexander and Zuberer, 1991). A color change observed on the overlaid medium after 3 days was considered to indicate siderophore production. Proteolytic activity was determined by streaking isolates on skim milk agar, and the formation of clear zones surrounding the colonies was considered to indicate casein hydrolyzation and the formation of soluble nitrogenous compounds. ACC deaminase production was screened by culturing bacteria in Dwarkin and Foster (DF) medium using ACC (Thermo Fisher Scientific, Waltham, MA, United States) as the sole nitrogen source (Dworkin and Foster, 1958). Quantification of ACC deaminase activity was performed spectrophotometrically by measuring the production of α-ketobutyrate at 540 nm by comparing it with the standard curve of different concentrations of purified α-ketobutyrate (Sigma, United States; Penrose and Glick, 2003).

Molecular identification of rhizobacteria

For taxonomical identification of the bacterial isolates, 16S rRNA and recA genes were amplified and sequenced using the primers 27 F and 1492 R (Pitcher et al., 1989), and BCR1 and BCR2 (Mahenthiralingam et al., 2000), respectively. Multiple sequence alignments were generated with the 16S rRNA and recA sequences of strain CNUC9, and available sequences of related species were downloaded from the National Center for Biotechnology Information (NCBI) databank. A phylogenetic tree was constructed using the MEGA v7.0 software (Kumar et al., 2018) based on maximum likelihood (ML) analysis. The best-fit model of molecular evolution with 1,000 bootstrap replicates was computed, and bootstrap values >80% were considered highly supported.

Screening of water-and salt-stress tolerant strains

To screen drought stress-tolerant bacteria, isolates (20 μl) were grown in 20 ml LB broth containing 15 and 30% PEG 6000 at 28°C with rapid shaking. We also screened for salinity tolerance by growing bacterial strains in 20 ml LB broth with different salt concentrations (0, 400, 600, 800, or 1,000 mM NaCl). Samples were collected periodically and optical density at 620 nm (OD620) was measured using a spectrophotometer. A bacterial OD620 ≥ 0.1 was considered to indicate tolerance. Distilled water (DW)-inoculated LB medium was used as a control.

Plant materials and growth conditions

Arabidopsis thaliana Col-0 seeds were surface-sterilized with 70% ethyl alcohol for 2 min and 1% sodium hypochlorite solution for 1 min, and then rinsed five times with sterile water. Five A. thaliana seeds were sown in one half of a two-section I-plate containing 1/2-strength Murashige and Skoog medium (1/2 MS) with 1% agar, and a 20 μl bacterial aliquot was spotted onto the other half of the I-plate containing NA medium. Four treatment combinations were prepared as follows: DW inoculation/0 mM NaCl, CNUC9 inoculation/0 mM NaCl, DW inoculation/100 mM NaCl, and CNUC9 inoculation/100 mM NaCl. Plates were sealed with parafilm and placed vertically in a growth chamber at 22°C with a 16 h/8 h light/dark photoperiod. After 10 days, plant growth parameters were recorded.

Seedling physiological traits

To determine seed germination and seedling survival rates, sterilized A. thaliana seeds were sown as described above. A total of 200 seeds for each treatment were used, each with three replicates. Root lengths >0.5 cm were considered to indicate survival. The germination and survival rates of different treatments were counted 10 days after sowing.

To analyze root architecture and leaf proliferation, A. thaliana seedlings in Petri dishes were directly scanned using a scanner (Perfection V850 Pro, Epson, Nagano, Japan), and scanned images were analyzed using the WinRHIZO image analysis system for A. thaliana (Regent Instruments, Inc., Quebec City, QC, Canada). Link and color analyses were used to detect total root length, root surface area, lateral root number, and leaf area. Microscopic differences in root architectures under salt stress among treatments were observed by microscopy (BX41, Olympus, Tokyo, Japan).

Plant biochemical analyses

Chlorophyll a (Chl a) and b (Chl b) and total chlorophyll content were determined by spectrophotometric analysis as described previously (Inskeep and Bloom, 1985). Briefly, 0.1 g seedling tissues were ground with liquid nitrogen, then transferred to a tube containing 1 ml 80% acetone. The mixtures were vortexed to homogenize the leaf tissues and centrifuged at 13,000 ×g for 10 min at 4°C. The supernatant was measured at OD of 663.6 and 646.6 nm. Chl a, Chl b, and total chlorophyll concentrations were calculated as follows (Porra, 2002):

[Chl a] = 13.71 × A663.6–2.85 × A646.6,

[Chl b] = 22.39 × A646.6–5.42 × A663.6,

[Total chlorophyll] = [Chl a] + [Chl b],

where A is absorbance at the indicated wavelength.

To determine the total sugar content, seedlings were ground using liquid nitrogen, and 0.1 g powder was homogenized with 10 ml sterile distilled water. Samples were vortexed and boiled for 1 h. To remove chlorophyll, 0.1 g activated charcoal was added and the mixture was boiled again for 30 min. Homogenized samples were centrifuged at 13,000 ×g for 10 min. Then, 200 μl supernatant was transferred to a new tube and 1 ml 0.2% anthrone was added. After boiling again for 30 min, the samples were transferred in an ice bath to stop the reaction. We recorded OD620 and standard curves were drawn for different sucrose concentrations as described previously (Ikram et al., 2018).

The proline content of A. thaliana seedlings was quantified as described previously (Bates et al., 1973). Briefly, 0.1 g ground tissues were homogenized with 1 ml 3% aqueous sulfosalicylic acid by vortexing, and then the samples were centrifuged at 13,000 ×g for 10 min. The 200 μl supernatant was mixed with 500 μl glacial acetic acid and 500 μl acidic ninhydrin. After boiling for 30 min, samples were transferred to an ice bath to stop the reaction. OD520 was recorded, and different concentrations of L-proline were used as standards.

Lipid peroxidation in A. thaliana seedlings was estimated to be malondialdehyde (MDA) content by calculating the amount of MDA extracted from 0.5% (w/v) thiobarbituric acid and 1% (w/v) trichloroacetic acid as described previously (Du and Bramlage, 1992). The OD of the supernatant was measured at 450, 532, and 600 nm by spectrophotometry, and MDA concentrations (μmol/g) were calculated as follows: [MDA] = 6.45 (A532–A600)–0.56 A450, where A is absorbance at the indicated wavelength.

Hydrogen peroxide (H2O2) content was detected by 3,3′-diaminobenzidine (DAB) staining as described previously (Asselbergh et al., 2007), and quantified as described previously (Mukherjee and Choudhuri, 1983). Different concentrations of H2O2 obtained from Sigma-Aldrich (St. Louis, MO, United States) were used as standards.

VOC analysis by solid-phase microextraction with gas chromatography–mass spectrometry (SPME–GC–MS)

Bacterial VOCs were collected using a solid-phase microextraction (SPME) fiber with 50/30 μm divinyl benzene/carboxen/polydimethylsiloxane (Supelco, Bellefonte, PA, United States) and an autosampler (CombiPAL, CTC Analytics, Zwingen, Switzerland). For VOCs sample preparation, a bacterial aliquot (20 μl) was inoculated into NA medium and the plates were incubated under the same conditions described for the plant growth assay. Fibers were introduced and held for 15 min in the bottle’s headspace at 50°C. For GC–MS analysis, we employed an Agilent 7890A series gas chromatograph (Agilent Technologies, Santa Clara, CA, United States) equipped with an HP-5MS capillary column (30 m length, 0.25 mm inner diameter, 0.25 μm film thickness) coupled with a Triple-Axis Detector (Agilent Technologies). The equipment was operated under the following conditions: automatic sample desorption with the injector port at 250°C, oven programmed with an initial temperature of 40°C to be held for 3 min, and then increased at a rate of 10°C min−1 to 220°C. Helium was used as the carrier gas (flow rate: 1.0 ml/min). Electron impact ionization at 200°C was conducted to analyze mass fragments in a scan range of 40–500 m/z. GC–MS analysis was performed independently for bacteria grown alone and for the culture media. Data analysis and compound identification were performed using the National Institute of Standards and Technology Mass Spectral Database (NIST 11.L).

Plant growth promotion assay using selected synthetic VOCs

To determine the effect of each identified VOC, synthetic dimethyl disulfide (Sigma-Aldrich), methyl thioacetate (TCI, Tokyo, Japan), and 2-undecanone (Sigma-Aldrich) were dissolved in dimethyl sulfoxide (DMSO). Different concentrations of each compound (0.2 μM, 2 μM, and 20 μM) and controls (50 μl DMSO and DW) were applied to a sterile paper disk (diameter: 1.85 mm), and placed on one half of an I-plate. A. thaliana seeds were sown on the opposite side of the I-plate containing 1/2 MS medium. The sealed plates were incubated as described above. After 10 days, the effects of individual synthetic compounds on plant growth were recorded.

Data analysis

All data presented in bar graphs are means ± standard errors of the mean (SEMs). Means were compared using analysis of variance (ANOVA), followed by Tukey’s post hoc test for multiple comparisons. All tests were performed using the GraphPad Prism 9 (GraphPad Software, San Diego, CA, United States). Group differences were considered significant at p < 0.05. Principal component analysis (PCA) graphs were created using the R software (R Core Team, Vienna, Austria) with the FactoMineR and factoextra packages. Heatmaps were created using the Bioinfo Intelligent Cloud online tool (Chen et al., 2022).

Results

Identification and growth-promoting characteristics of isolate CNUC9

To discover bacteria that promote plant growth and salt tolerance, we isolated bacteria from the maize rhizosphere. Total of 24 isolates out of 139 isolates were selected according to their morphological characteristics and examined for plant growth-promoting traits. Among these bacteria, isolate CNUC9 showed the highest ACC deaminase production (292.5 nM). This isolate also produced IAA (9.8 μg/ml) and siderophore and exhibited substrate solubilization of casein and tricalcium phosphate (Supplementary Figure S1). These results suggest that CNUC9 has potential as a PGPR, providing nutrients to plants. CNUC9 also showed tolerance of up to 400 mM NaCl salt stress and 30% PEG6000 osmotic stress in LB medium (Figures 1A,B), indicating that it may perform efficiently in saline or drought environments.

FIGURE 1
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Figure 1. Growth curve and phylogenetic analysis of B. pyrrocinia CNUC9. Data for B. pyrrocinia CNUC9 growth curves were measured in liquid LB medium supplemented with (A) different NaCl concentrations (0, 400, 600, 800, or 1,000 mM), or (B) PEG 6000 concentrations (0, 15%, or 30%) incubated at 28°C for 48 h with rapid agitation. Error bars represent standard error (SE, n = 9). (C) Maximum likelihood tree inferred from analysis of recA gene sequences of Burkholderia species. Bootstrap values ≥70% based on 1,000 replicates are shown at the nodes. Xanthomonas axonopodis pv. citri str. 306 was used as an outgroup. Evolutionary distances were computed using the Kimura 2-parameter method and were expressed in numbers of base substitutions per site. Evolutionary analyses were conducted using the MEGA v6 software.

Based on a BLASTN search of the 16S rRNA gene sequence, CNUC9 shared 100% homology with Bcc, including B. cepacia, B. ambifaria, and B. pyrrocinia. To further identify this strain, we performed recA gene sequence analysis. BLAST analysis indicated that the recA gene sequences of CNUC9 shared 100% identity with B. pyrrocinia strain JK-SH007 (accession no. CP094459). In a phylogenetic tree, CNUC9 clustered within the Bcc group and with its nearest neighbor as B. pyrrocinia A12 (JQ658434) and B. pyrrocinia JK-SH007, which has growth-promoting effects on tobacco seedlings (Han et al., 2012) and has biocontrol potential on polar canker (Ren et al., 2011), respectively (Figure 1C). Therefore, CNUC9 was identified as B. pyrrocinia based on 16S rRNA (accession no: ON076876) and recA (accession no: ON086316) gene sequences, which have multiple plant growth-promoting traits. Among bacterial determinants on plant growth promotion, bacterial VOCs displayed many advantages to apply crop plant under field compared to previous agrochemicals and chemical fertilizers (Fincheira et al., 2021).

CNUC9 VOCs increase germination and survival rates and biomass under salt stress condition

To investigate the effects of VOCs emitted by CNUC9 on plant growth and abiotic stress tolerance, A. thaliana Col-0 seeds were sown on 1/2 MS medium with and without 100 mM salt and co-cultured with CNUC9 on I-plates (Figure 2). Under no salt stress (0 mM NaCl), there were no significant differences in A. thaliana seed germination or survival rates with or without bacterial VOCs exposure (p > 0.05). However, salt stress caused significant reductions in germination (25.9%) and survival rates (48.7%) among seedlings not exposed to VOCs, compared to control seedlings grown without salt stress. Interestingly, VOCs-exposed seedlings under salt stress had 22.6 and 37.3% higher germination and survival rates than non-exposed seedlings.

FIGURE 2
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Figure 2. Effects of volatile organic compounds (VOCs) of B. pyrrocinia CNUC9 on Arabidopsis seed germination and survival rates under non-stress and salt stress conditions. (A) Germination rates and (B) survival rates were measured after 10  days. Error bars represent standard error of the mean (SEM) of three independent biological replicates (n = 200 seedlings per replicate). Asterisks on bars of the same parameter indicate statistical differences among treatments according to two-way analysis of variance (ANOVA), followed by Tukey’s multiple comparison test (**p ≤ 0.01; ***p ≤ 0.001; n = 600). ns, non significant.

VOCs produced by CNUC9 triggered a number of physiological changes in A. thaliana. Following exposure to VOCs from CNUC9 in I-plate culture (0 or 100 mM NaCl) for 10 days, A. thaliana seedlings displayed increased biomass, in terms of lateral root numbers and extensive leaf area (Figures 3AH). The growth parameters were further quantified using the WinRHIZO software (Figures 3IL). Under non-stress conditions, VOCs-exposed seedlings showed significantly increased root length (64.7%), root surface area (93.0%), and lateral root numbers (41.3%) compared to non-exposed seedlings. Similar results were obtained for seedlings grown under salt stress. Seedlings treated with 100 mM NaCl that exposed to VOCs were exhibited significantly increased root length (54.9%), root surface area (42.8%), and lateral root numbers (80.9%) compared to non-exposed seedlings. These data demonstrate that VOCs from CNUC9 altered root architecture and enhanced root growth in A. thaliana seedlings with or without salt stress. Salt stress significantly reduced seedling root length, root surface area, and lateral root numbers, by 34.2, 24.9, and 46.5%, respectively, whereas VOCs-exposed seedlings showed similar root parameter levels to the controls without salt stress. Interestingly, A. thaliana seedlings exposed to VOCs had markedly larger leaf area (no salt stress, 129.6%; salt stress, 174.5%) than non-exposed control seedlings. Together, these results suggest that VOCs from CNUC9 greatly promoted plant growth and ameliorated salinity stress in A. thaliana seedlings by altering physicochemical properties in cellular solutes.

FIGURE 3
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Figure 3. Effects of B. pyrrocinia CNUC9 VOCs on growth of A. thaliana seedlings under non-stress (0 mM NaCl) and salt stress (100 mM NaCl) conditions for 10  days. (A–D) CNUC9 VOCs promoted the growth of A. thaliana seedlings. (A) No VOCs exposure; 0 mM NaCl. (B) CNUC9 VOCs exposure; 0 mM NaCl. (C) No VOCs exposure; 100 mM NaCl. (D) CNUC9 VOCs exposure; 100 mM NaCl. (E,F) Root tips under salt stress under (E) no VOCs exposure or (F) CNUC9 VOCs exposure. (G,H) Lateral roots under salt stress under (G) no VOCs exposure or (H) CNUC9 VOCs exposure. (I–L) Quantitative analysis of A. thaliana biomass after 10  days of exposure to CNUC9 VOCs under no-stress and salt stress conditions. (I) Root length. (J) Root surface area. (K) Lateral root numbers. (L) Total leaf area. Error bars represent SEM of three independent biological replicates (n = 20 seedlings per replicate). Asterisks on bars of the same parameter indicate statistical differences among treatments (two-way ANOVA followed by Tukey’s test; *p ≤ 0.05; **p ≤ 0.01; ***p ≤ 0.001; n = 60). ns, non significant.

CNUC9 VOCs increase leaf chlorophyll content

To examine the impact of VOCs exposure on plant photosynthetic efficiency, the contents of leaf chlorophyll were measured. Under non-stress conditions, the levels of leaf Chl a, Chl b, and total chlorophyll were significantly increased in VOCs-exposed seedlings (p < 0.001), by 63.6, 66.4, and 64.2%, respectively, compared to non-exposed seedlings (Figures 4AC). Similarly, seedlings exposed to VOCs for 10 days under salt stress conditions had 100.5, 29.0, and 69.0% higher leaf Chl a, Chl b, and total chlorophyll content, respectively, than non-exposed seedlings. Chl a, Chl b, and total chlorophyll content significantly decreased by 43.6, 23.0, and 34.9%, respectively, in non-exposed seedlings grown at 100 mM NaCl, whereas VOCs-exposed seedlings maintained leaf chlorophyll levels that were similar to those under non-stress conditions. These results indicate that exposure to VOCs from CNUC9 maintained photosynthetic pigments in A. thaliana seedlings, particularly under salt stress. These findings were consistent with the greater leaf area expansion as well as darker green leaves observed in A. thaliana seedlings exposed to CNUC9 VOCs than in non-exposed plants (Figure 3).

FIGURE 4
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Figure 4. Effects of B. pyrrocinia CNUC9 VOCs on changes in (A) chlorophyll a, (B) chlorophyll b, (C) total chlorophyll, (D) total soluble sugar, (E) proline, and (F) malondialdehyde (MDA) content under no-stress (0 mM NaCl) and salt stress (100 mM NaCl) conditions for 10 days. Error bars represent SEM of three independent biological replicates (n = 20 seedlings per replicate). Asterisks on bars of the same parameters indicate statistical differences among treatments (two-way ANOVA followed by Tukey’s test; *p ≤ 0.05; **p ≤ 0.01; ***p ≤ 0.001; n = 60). ns, non significant.

CNUC9 VOCs modulate total soluble sugar, proline, and MDA content

Salt stress can damage the cellular membranes of plants and alter the production of osmoprotectants (Hasanuzzaman et al., 2013). To investigate whether CNUC9 VOCs affect physiological responses to osmoprotectants, endogenous levels of total soluble sugar, proline, and MDA were measured. The VOCs significantly enhanced the total soluble sugar content of seedlings compared to non-exposed seedlings grown under non-stress (38.0%) and salt stress (26.0%) conditions (p < 0.01; Figure 4D). Salt stress significantly reduced the total soluble sugar content by 39.3 and 44.6%, respectively, in non-exposed and VOCs-exposed A. thaliana seedlings.

Altered proline levels in plants are characteristic of salt stress. Plants without salt stress showed no significant difference in proline content with or without CNUC9 VOCs exposure (p > 0.05; Figure 4E). Under salt stress, proline content was dramatically increased by 293.7% in non-exposed seedlings compared to non-exposed seedlings without salt stress. The proline content of A. thaliana seedlings exposed to CNUC9 VOCs under salt stress increased by 97.78%, but was 34.8% lower than that of non-exposed seedlings.

Malondialdehyde (MDA) is one of the end products of lipid peroxidation and has been used as oxidative stress indicator in plant tissues during ROS damage (Gutteridge, 1995). Under salt stress, MDA content was significantly higher (77.6%) in non-exposed seedlings than in non-stressed control seedlings (p < 0.001; Figure 4F), whereas seedlings exposed to VOCs had 24.5% lower MDA content. Interestingly, seedlings under no salt stress exposed to CNUC9 VOCs had similar MDA content to non-exposed controls. Together, these results indicate that CNUC9 VOCs are involved in cellular membrane modulation and osmolyte protection in A. thaliana seedlings under salinity stress.

CNUC9 VOCs modulate ROS accumulation

DAB polymerization was not observed in either VOCs-exposed or non-exposed seedlings under non-stress conditions, whereas extra brown precipitates indicating the presence of H2O2 were detected in non-exposed leaves under 100 mM NaCl stress (Figures 5A-C). Light brown precipitates were also observed in VOCs-exposed seedlings under 100 mM NaCl salt stress, indicating decreased H2O2 levels (Figure 5D). Interestingly, there was significantly less accumulation of brown precipitate in younger leaves than in older leaves. These results were further supported by an H2O2 accumulation assay. Under 100 mM NaCl stress, H2O2 levels were significantly higher (40.5%) in non-VOCs-exposed seedlings than in non-stressed control seedlings (p < 0.001), whereas in VOCs-exposed A. thaliana seedlings, H2O2 levels were significantly decreased by 10.7% compared to non-exposed seedlings (p < 0.01; Figure 5E). DAB staining and ROS accumulation assay results revealed that CNUC9 VOCs exposure reduced H2O2 accumulation in salt-stressed A. thaliana seedlings.

FIGURE 5
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Figure 5. Effects of B. pyrrocinia CNUC9 VOCs on hydrogen peroxide (H2O2) modulation in A. thaliana seedlings. (A–D) A. thaliana leaves stained with 3,3′-diaminobenzidine (DAB) after seedling exposure to CNUC9 VOCs under no-stress and salt stress conditions for 10  days. (A) No VOCs exposure; 0 mM NaCl. (B) CNUC9 VOCs exposure; 0 mM NaCl. (C) No VOCs exposure; 100 mM NaCl. (D) CNUC9 VOCs exposure; 100 mM NaCl. Bar = 1 mm. (E) Quantification of H2O2 production in A. thaliana seedlings after exposure to CNUC9 VOCs under no-stress and salt stress conditions. Error bars represent SEM of three independent biological replicates (n = 20 seedlings per replicate). Asterisks on bars of the same parameters indicate statistical differences among treatments (two-way ANOVA followed by Tukey’s test; **p ≤ 0.01; ***p ≤ 0.001; n = 60). ns, non significant.

CNUC9 VOC profiling

To identify the VOCs emitted by CNUC9, we conducted SPME–GC–MS analysis on CNUC9 at 72 h post-inoculation (Figure 6). Three peaks were identified from CNUC9, among which the major peak areas were DMDS (ca. 87.71% of the total peak area; retention time [RT], 5.01 min) and methyl thioacetate (ca. 11.67%; RT, 4.04 min). The compound 2-undecanone (ca. 0.61%; RT, 14.85 min) was present in relatively low amounts; other detected compounds did not differ significantly from the uninoculated medium (control).

FIGURE 6
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Figure 6. Gas chromatography–mass spectrometry (GC–MS) analysis of VOCs of B. pyrrocinia CNUC9 grown on nutrient agar (NA) medium for 3  days. (A) NA medium control. (B) B. pyrrocinia CNUC9.

Effects of pharmaceutical application of VOCs on plant growth

To determine the effects of identified VOCs on plant growth, we tested three concentrations of DMDS, methyl thioacetate, and 2-undecanone using I-plates. We found that only 2-undecanone and DMDS promoted aerial and root growth in A. thaliana seedlings (Figure 7). Among the three concentrations, 2 μM 2-undecanone-exposed seedlings had increased root surface area (65.6%), root length (63.3%), lateral root numbers (222.6%), and leaf area (57.6%) compared to control groups (Figure 7; Supplementary Figure S2). In addition, seedlings exposed to 0.2 μM DMDS showed significantly increased root surface area (44.3%), root length (45.9%), lateral root numbers (200.2%), and leaf area (42.7%) compared to control groups; however, these levels were decreased compared to seedlings treated with 2 μM methyl thioacetate. Interestingly, higher VOCs concentrations had negative effects on seedling growth. Notably, significant growth inhibition occurred under treatment with 20 μM 2-undecanone, in terms of decreased root length (86.4%), root surface area (90.9%), lateral root numbers (59.2%), and leaf area (78.6%) compared to the control groups (Supplementary Figure S2). These results suggest that 2-undecanone and DMDS are major CNUC9 VOCs promoting seedling growth in a dose-dependent manner.

FIGURE 7
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Figure 7. Effect of pure synthetic compounds on A. thaliana seedling growth after 10  days under no-stress conditions. Representative photographs of (A) control seedlings and seedlings treated with (B) 2  μM 2-undecanone, (C) 0.2  μM dimethyl disulfide, (D) 2  μM methyl thioacetate. (E–H) Growth parameters of representative A. thaliana seedlings including (E) root length, (F) root surface area, (G) lateral root numbers, and (H) total leaf area. Error bars represent SEM of three independent biological replicates (n = 20 seedlings per replicate). Different letters indicate significant differences between treatments (one-way ANOVA followed by Tukey’s test; p < 0.05).

Principal component analysis and heatmap analysis

We investigated possible relationships between different plant growth parameters and CNUC9 VOCs exposure effects under non-stress and salt stress conditions using Principal Component Analysis (PCA) based on the mean values of all variables. A bi-plot was inferred from the PCA-separated plant responses of the first two components, with overall 97.1% variability (PC1: 83.3%; PC2: 13.8%; Figure 8A). All treatments showed comparable morphological, biochemical, and physiological effects under CNUC9 VOCs exposure and salt stress. PCA results revealed that seedlings exposed to CNUC9 VOCs had significantly enhanced plant organ development (leaf area, root tips, and surface area), photosynthetic efficiency (Chl a, Chl b, and total chlorophyll content), and osmoprotectant accumulation (soluble sugar) compared to control inoculation under non-stress conditions. Similarly, CNUC9 VOCs treatment of stressed A. thaliana seedlings induced different H2O2, MDA, and proline content responses from the non-inoculation control.

FIGURE 8
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Figure 8. (A) Principal component analysis and (B) heat map responses of Pearson’s correlation coefficient for all growth variables of A. thaliana treated with B. pyrrocinia CNUC9 VOCs grown under salinity stress. Correlations are indicated in blue (positive) or red (negative).

Heatmap analysis showed that plant growth variables exhibited differential responses under different treatments (Figure 8B). Multivariate heatmap analysis suggested that salinity stress had positive effects on MDA, proline, and H2O2 accumulations in A. thaliana seedlings, but was negatively correlated with germination and survival rates, root proliferation, chlorophyll content, and sugar content in seedlings. By contrast, plants treated with CNUC9 VOCs positively influenced the vegetative, physiological, and photosynthetic pigments of A. thaliana seedlings under non-stress conditions, promoting plant growth. Heatmap results also indicated that CNUC9 VOCs maintained plant growth indices to non-stress levels under salt stress.

Discussion

Present study, we newly isolated and characterized the PGPR strain B. pyrrocinia CNUC9 from maize rhizosphere. This isolate exhibited the ability to produce ACC deaminase, siderophore, protease, IAA, and able to solubilize calcium phosphate. Previously, endophytic B. pyrrocinia JK-SH007 was reported to promote plant growth and suppress poplar stem canker disease (Ren et al., 2011). Burkholderia pyrrocinia P10 has also been shown to significantly enhance peanut seedling growth under saline conditions (100 and 170 mmol/l NaCl) by secreting IAA, solubilizing phosphorus compounds, and producing siderophores and ACC deaminase (Han et al., 2021). Thus, B. pyrrocinia shows potential as a PGPR or biocontrol candidate via direct interaction with plants. However, our results clearly indicate that VOCs produced by B. pyrrocinia CNUC9 enhance salt tolerance in A. thaliana seedlings, showing significant increases in germination and survival rates, plant development, photosynthetic component regulation, antioxidant activity, and osmoprotectant responses in the absence of any direct contact with plants.

Recent studies have demonstrated that VOCs emitted by PGPR have the ability to improve plant growth and biomass without physical contact, potentially enhancing plant resistance against biotic and abiotic stresses (Ryu et al., 2003; Park et al., 2015; Raza et al., 2016; Cordovez et al., 2018; Liu et al., 2020a). We also observed that A. thaliana seedlings exposed to B. pyrrocinia CNUC9 VOCs showed significantly enhanced growth compared to non-VOCs-exposed plants under both normal and salt stress conditions. As shown in Figure 3, representative A. thaliana seedlings treated with CNUC9 VOCs reached the 5-leaf stage (non-stress) and 4-leaf stage (salt stress) after 10 days of co-cultivation, whereas control plantlets had 4 leaves (non-stress) and 3 leaves (salt stress). VOCs-exposed A. thaliana seedlings also showed 2.3-fold (non-stress) and 2.7-fold (salt-stress) increases in total leaf area compared to non-exposed controls. Similarly, Tahir et al. (2017) and Zhang et al. (2007) reported that bacterial volatiles had a significant increase leaf area and leaf expansion by modulating expressions of cell division and auxin related genes.

The root system is responsible for water and nutrient acquisition from the soil; thus, a larger root system architecture increases plant resilience and survival under various stresses. Root system architecture is coordinated by plant growth hormones including auxin and cytokinin (Wang et al., 2021; Rivas et al., 2022); previous studies reported that beneficial soil microbes directly regulate the accumulation of these hormones in plant roots (Wu et al., 2012; Wang et al., 2021). Interestingly, volatiles released by PGPR also significantly improve root architecture through modulating the root hormonal networks that contribute to water and nutrient uptake capacity (Wang et al., 2006; Sharifi et al., 2021). We observed adverse effects of salt stress on A. thaliana root system architecture in terms of significantly reduced lateral root numbers and root hair development, as well as decreased root length and surface area (Figure 3). However, exposure to CNUC9 VOCs markedly alleviated the negative effects of salt stress, and all root development parameters recovered to levels similar to the control group under no salt stress (Figure 3). Recently, Li et al. (2021) demonstrated that VOCs produced by Bacillus species participated in regulating lateral root development in A. thaliana seedlings via an auxin-dependent mechanism. By contrast, B. subtilis GB03 volatiles triggered growth promotion through cytokinin–ethylene signaling, whereas B. amyloliquefaciens IN937a volatiles appeared to act independently of both cytokinin and ethylene (Ryu et al., 2003; Farag et al., 2006). These findings suggest that different types of volatile compounds emitted by PGPR may differentially regulate plant hormones via different signaling pathways. We demonstrated that VOCs produced by CNUC9 significantly promoted root system architecture formation in A. thaliana seedlings; the specific mechanisms of VOCs-mediated phytohormone responses are currently being investigated.

Under salt stress, plants experience physiological and biochemical changes that lead to the accumulation of an array of metabolites such as chlorophyll contents, total soluble sugar, and proline in cells (Kumar et al., 2017). PGPR stimulates plants to activate different physiological and biochemical mechanisms to cope with stress by accumulating osmotic regulator solutes to maintain osmotic pressure homeostasis and structural stability (Acosta-Motos et al., 2017). Chlorophyll is a green pigment that has a vital role in photosynthesis. Maintaining endogenous chlorophyll levels is important for photosynthetic efficiency to acquire energy for growth and development. Under salt stress, however, chloroplast enzyme activity is increased, followed by the acceleration of chlorophyll degradation and decreased photosynthesis efficiency (Megdiche et al., 2008). Our results showed that salt stress adversely affected Chl a, Chl b, and total chlorophyll content; however, CNUC9 VOCs exposure significantly increased chlorophyll content compared to non-exposed controls under non-salt-stress conditions and successfully protected photosynthetic pigment levels under 100 mM salt stress (Figures 4AC). Our results are consistent with those of a previous report that exposure to B. subtilis GBO3 VOCs stimulated photosynthetic activity by increasing chlorophyll content and upregulating chloroplast gene expression (Zhang et al., 2008). Additionally, VOCs of B. subtilis SYST2 and B. amyloliquefaciens FZB42 increase chlorophyll synthesis, which helps mitigate the negative effects of saline stress on photosynthesis and enhancing plant growth (Tahir et al., 2017).

Total soluble sugar and proline are often used as indicators of potential stress reactions in plants. Total soluble sugar is a main product of photosynthesis and a fundamental component of energy supply to cells for carbohydrate metabolism. However, in plants under stress, soluble sugar acts as a major osmoregulation substance (Zang et al., 2019). Proline is another metabolite that acts as an osmoprotectant and antioxidant defense molecule (e.g., scavenging hydroxyl free radicals) that helps maintain osmotic balance and lower ROS concentrations under stress (Kumar et al., 2017). The application of PGPR is beneficial for total sugar and proline accumulation in plants against osmotic stress caused by salinity (Abbas et al., 2019). For example, inoculation of B. subtilis SU47 and Arthrobacter sp. SU18 enhanced the total soluble sugar and proline content of wheat under salt stress compared to non-inoculated control plants (Upadhyay et al., 2012). The PGPR strain Kocuria rhizophila Y1 also increased soluble sugar and proline content in maize under salt stress (Li et al., 2020a). Similar results were obtained in the current study, as total sugar content increased significantly in plants under CNUC9 VOCs exposure and either non-stress or salt stress conditions (Figure 4D). By contrast, proline content was significantly lower in plants exposed to VOCs than in non-exposed plants under salt stress (Figure 4E). This finding is consistent with previous studies that have reported that PGPR treatment decreases proline content but increases total sugar content (Hmaeid et al., 2019; Li et al., 2020a; Liu et al., 2020b). Such studies suggested that proline accumulation is lower in the presence of PGPR because plants treated with PGPR do not experience high salt stress.

ROS play important roles as signaling molecules in the regulation of plant adaptive defense responses against biotic and abiotic stresses (Kumar et al., 2017). Under stress, plants overproduce ROS, resulting in chlorophyll degradation, cell membrane damage through lipid peroxidation, and electrolyte leakage (Kumar and Singh, 2016). Lipid peroxidation is a ROS-mediated cellular damage reaction that targets polyunsaturated fatty acids in the cell membrane and generates MDA as a final metabolite (Kumar et al., 2017; Alexander et al., 2020). Thus, MDA content reflects ROS production in plant tissues during stress and is responsible for cellular membrane instability (Gutteridge, 1995). Under salt stress, we observed marked reductions in H2O2 and MDA concentrations in CNUC9 VOCs-exposed A. thaliana seedlings compared to non-exposed seedlings (Figures 4, 5). Those results suggest that CNUC9 VOCs alleviated oxidative damage in plants due to salt stress and boost the membrane stability.

We detected three VOCs produced by B. pyrrocinia CNUC9; among these, we concluded that DMDS was the major VOC influencing stress responses in A. thaliana in this study, which is consistent with the findings of a previous study on strain B. pyrrocinia JK-SH007 (Liu et al., 2020a). DMDS is common to most of bacterial species, e.g., Pseudomonas, Serratia, Bacillus, and Stenotrophomonas, which show antifungal activity, influence mosquito behavior, enhance plant growth, and reduce potential fungal toxin production (Meldau et al., 2012; Popova et al., 2014; Tyagi et al., 2019). DMDS also accelerated the growth of tobacco plants by increasing sulfur content in the environment (Meldau et al., 2013), and induced an auxin response in lateral root primordia in A. thaliana Tyagi et al. (2019). However, Cordovez et al. (2018) reported that DMDS had no impact on shoot growth in A. thaliana and only a slight effect on root growth. In our study, the plant-promotion efficiency of DMDS was concentration-dependent. The 2-undecanone belongs to medium-chain methyl ketones family which exhibit low water solubility and high volatility (Yan et al., 2020). This volatile is a major VOC of Pseudomonas spp. and Bacillus spp. (Gu et al., 2007; Timm et al., 2018), which can stimulate seed germination in Lactuca sativa (Fincheira et al., 2017) and display nematocidal and antifungal activities (Gu et al., 2007; Li et al., 2020b). We also found that an optimal dose of 2-undecanone had strong growth-promotion ability, whereas higher concentrations led to growth inhibition (Supplementary Figure S2).

In addition to those VOCs, bacterial inorganic volatiles are also reported to affect plant growth: ammonia and hydrogen cyanide are considered harmful (Blom et al., 2011b; Weise et al., 2013), while CO2, nitric oxide and hydrogen sulfide are reported beneficial to plant growth and abiotic stress tolerance (Kai and Piechulla, 2009; Christou et al., 2013; Sharma et al., 2021). Therefore, in the sealed Petri dish, the accumulation of the former volatiles can induce growth inhibition whereas accumulation of the latter can promote plant growth. For example, as an essential substrate for photosynthesis, CO2 has been suggested as a plant growth promoting compound. Kai and Piechulla (2009) demonstrated that the growth promoting effect of Serratia odorifera 4Rx13 was specific to the sealed Petri dish environment, not to the open cultivations, indicating the enhanced effect of bacteria-produced CO2 on plant growth. Zhang et al. (2021) compared the plant growth in the tightly sealed (high CO2) or open (ambient CO2) systems and elucidated the role of CO2 as a key contributor to the plant growth-promoting volatiles emitted by bacteria in a sealed system. However, others provided evidence for a lack of role for CO2 in plant growth promotion. Lee et al. (2012) presented that co-cultured PGPR strains induced a significantly enhanced growth promotion of A. thaliana by growing plants in the presence of Ba(OH)2, a chemical eliminator of CO2. Ledger et al. (2016) also assessed the effects of Paraburkholderia phytofirmans PsJN on plant growth in sealed-and non-sealed systems, and clarified that plant growth promotion was predominated by volatile-mediated effects, not by CO2 produced by PsJN. We showed that optimal doses of synthetic VOCs (DMDS and 2-undecanone) significantly promoted A. thaliana growth in the sealed Petri dish (Figure 7). However, we also noticed that the effects of growth promotion and salt stress tolerance were much greater when A. thaliana was co-cultured with CNUC9 compared with synthetic compounds (Figure 3; Supplementary Figure S2). These results suggest that plant growth promotion and salt stress tolerance may be induced in part by other volatile compounds such as CO2, nitric oxide and hydrogen sulfide produced by CNUC9 in addition to DMDS and 2-undecanone. Although further studies are still required, these data support the important roles of DMDS and 2-undecanone in plant growth promotion and resistance to salt stress.

Volatile mixtures depend strongly on the growth medium (Rath et al., 2018) and vary considerably among closely related species (Nawrath et al., 2012), among individuals of the same species from different origins (Groenhagen et al., 2013), and among inoculation doses (Blom et al., 2011a). Benzothiazole, dimethylthiomethane, and 11 other VOCs have been detected from B. pyrrocinia JK-SH007 cultured on LB medium. These compounds (excluding DMDS) were not found in our strain B. pyrrocinia CNUC9 grown on NA medium, indicating that VOCs production is highly cultivation medium-dependent. Blom et al. (2011a) showed that VOCs of B. pyrrocinia Bcc171 grown on Methyl Red and Voges–Proskauer (MR-VP) medium show greater growth promotion in A. thialiana, whereas VOCs of B. pyrrocinia Bcc171 grown on LB medium inhibit A. thialiana growth. Although in that study both strains were cultured on LB medium, strain B. pyrrocinia Bcc171 isolated from soil in the United States produced trans-2-dodecenal, 2-nonanone, 2-decanone, 2-undecanone, undecanal, tetrahydro-3-furanmethanol, 1-butoxy-2-propanol, phenol, and 3-methyl-1-butanol, none of which were detected on strain B. pyrrocinia JK-SH007 from poplar stems in China, which corresponds with results of Groenhagen et al. (2013). To date, VOCs biosynthesis pathway data are insufficient to understand these phenomena; further in-depth study of the metabolic processes involved in VOC biosynthesis and genetic regulation are required, and the mechanism of their action on various biological substances must be investigated.

Conclusion

Our findings have shown that co-culture with B. pyrrocinia CNUC9 VOCs stimulated the development of the root system architecture, leaf proliferation, and induction of salt tolerance in A. thaliana seedlings. Based on VOC profiling analysis using SPME–GC–MS, we found that CNUC9 emitted three VOCs under our experimental conditions: DMDS, methyl thioacetate, and 2-undecanone. Among these three VOCs, optimal concentrations of dimethyl disulfide and 2-undecanone promoted A. thaliana growth and alleviated salt stress. Our findings provide a potential insight on the agricultural application of VOCs for salt-stress tolerance. Further study is required to elucidate the molecular mechanisms of VOCs-mediated systemic salt tolerance in plants.

Data availability statement

The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary material.

Author contributions

JMY: conceptualization, funding acquisition and project administration, review and editing. HL: investigation and experiments, data analysis, original draft preparation. C-MR and MR conducted GC–MS analysis. All authors have read and agreed to the published version of the manuscript.

Funding

This work has supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2020R1C1C1012005).

Acknowledgments

The authors thank Jin-Cheol Kim (Department of Agricultural Chemistry, Chonnam National University) for preliminary SPME-GC–MS based VOCs profiling analysis.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2022.1050901/full#supplementary-material

References

Abbas, R., Rasul, S., Aslam, K., Baber, M., Shahid, M., Mubeen, F., et al. (2019). Halotolerant PGPR: A hope for cultivation of saline soils. J. King Saud Univ. Sci. 31, 1195–1201. doi: 10.1016/j.jksus.2019.02.019

CrossRef Full Text | Google Scholar

Acosta-Motos, J. R., Ortuño, M. F., Bernal-Vicente, A., Diaz-Vivancos, P., Sanchez-Blanco, M. J., and Hernandez, J. A. (2017). Plant responses to salt stress: adaptive mechanisms. Agronomy 7:18. doi: 10.3390/agronomy7010018

CrossRef Full Text | Google Scholar

Alexander, A., Singh, V. K., and Mishra, A. (2020). Halotolerant PGPR Stenotrophomonas maltophilia BJ01 induces salt tolerance by modulating physiology and biochemical activities of Arachis hypogaea. Front. Microbiol. 11:568289. doi: 10.3389/fmicb.2020.568289

PubMed Abstract | CrossRef Full Text | Google Scholar

Alexander, D., and Zuberer, D. (1991). Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria. Biol. Fertil. Soils 12, 39–45. doi: 10.1007/BF00369386

CrossRef Full Text | Google Scholar

Ali, B., Wang, X., Saleem, M. H., Hafeez, A., Afridi, M. S., Khan, S., et al. (2022). PGPR-mediated salt tolerance in maize by modulating plant physiology, antioxidant defense, compatible solutes accumulation and bio-surfactant producing genes. Plan. Theory 11:345. doi: 10.3390/plants11030345

PubMed Abstract | CrossRef Full Text | Google Scholar

Asselbergh, B., Curvers, K., França, S. C., Audenaert, K., Vuylsteke, M., Van Breusegem, F., et al. (2007). Resistance to Botrytis cinerea in sitiens, an abscisic acid-deficient tomato mutant, involves timely production of hydrogen peroxide and cell wall modifications in the epidermis. Plant Physiol. 144, 1863–1877. doi: 10.1104/pp.107.099226

PubMed Abstract | CrossRef Full Text | Google Scholar

Basu, A., Prasad, P., Das, S. N., Kalam, S., Sayyed, R. Z., Reddy, M. S., et al. (2021). Plant growth promoting rhizobacteria (PGPR) as green bioinoculants: recent developments, constraints, and prospects. Sustainability 13:1140. doi: 10.3390/su13031140

CrossRef Full Text | Google Scholar

Bates, L. S., Waldren, R. P., and Teare, I. (1973). Rapid determination of free proline for water-stress studies. Plant Soil 39, 205–207. doi: 10.1007/BF00018060

CrossRef Full Text | Google Scholar

Bhattacharyya, P. N., and Jha, D. K. (2012). Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture. World J. Microbiol. Biotechnol. 28, 1327–1350. doi: 10.1007/s11274-011-0979-9

PubMed Abstract | CrossRef Full Text | Google Scholar

Bibi, F., Ilyas, N., Arshad, M., Khalid, A., Saeed, M., Ansar, S., et al. (2022). Formulation and efficacy testing of bio-organic fertilizer produced through solid-state fermentation of agro-waste by Burkholderia cenocepacia. Chemosphere 291:132762. doi: 10.1016/j.chemosphere.2021.132762

PubMed Abstract | CrossRef Full Text | Google Scholar

Blom, D., Fabbri, C., Connor, E., Schiestl, F., Klauser, D., Boller, T., et al. (2011a). Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions. Environ. Microbiol. 13, 3047–3058. doi: 10.1111/j.1462-2920.2011.02582.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Blom, D., Fabbri, C., Eberl, L., and Weisskopf, L. (2011b). Volatile-mediated killing of Arabidopsis thaliana by bacteria is mainly due to hydrogen cyanide. Appl. Environ. Microbiol. 77, 1000–1008. doi: 10.1128/AEM.01968-10

PubMed Abstract | CrossRef Full Text | Google Scholar

Bric, J. M., Bostock, R. M., and Silverstone, S. E. (1991). Rapid in situ assay for indoleacetic acid production by bacteria immobilized on a nitrocellulose membrane. Appl. Environ. Microbiol. 57, 535–538. doi: 10.1128/aem.57.2.535-538.1991

PubMed Abstract | CrossRef Full Text | Google Scholar

Cappellari, L. D. R., Chiappero, J., Palermo, T. B., Giordano, W., and Banchio, E. (2020). Volatile organic compounds from rhizobacteria increase the biosynthesis of secondary metabolites and improve the antioxidant status in Mentha piperita L. grown under salt stress. Agronomy 10:1094. doi: 10.3390/agronomy10081094

CrossRef Full Text | Google Scholar

Cellini, A., Spinelli, F., Donati, I., Ryu, C.-M., and Kloepper, J. W. (2021). Bacterial volatile compound-based tools for crop management and quality. Trends Plant Sci. 26, 968–983. doi: 10.1016/j.tplants.2021.05.006

PubMed Abstract | CrossRef Full Text | Google Scholar

Chen, T., Liu, Y. X., and Huang, L. (2022). ImageGP: An easy‐to‐use data visualization web server for scientific researchers. iMeta 1, e5.

Google Scholar

Christou, A., Manganaris, G. A., Papadopoulos, I., and Fotopoulos, V. (2013). Hydrogen sulfide induces systemic tolerance to salinity and non-ionic osmotic stress in strawberry plants through modification of reactive species biosynthesis and transcriptional regulation of multiple defence pathways. J. Exp. Bot. 64, 1953–1966. doi: 10.1093/jxb/ert055

PubMed Abstract | CrossRef Full Text | Google Scholar

Cordovez, V., Schop, S., Hordijk, K., Dupré de Boulois, H., Coppens, F., Hanssen, I., et al. (2018). Priming of plant growth promotion by volatiles of root-associated microbacterium spp. Appl. Environ. Microbiol. 84:e01865-18. doi: 10.1128/AEM.01865-18

CrossRef Full Text | Google Scholar

de los Santos-Villalobos, S., Barrera-Galicia, G. C., Miranda-Salcedo, M. A., and Peña-Cabriales, J. J. (2012). Burkholderia cepacia XXVI siderophore with biocontrol capacity against Colletotrichum gloeosporioides. World J. Microbiol. Biotechnol. 28, 2615–2623. doi: 10.1007/s11274-012-1071-9

PubMed Abstract | CrossRef Full Text | Google Scholar

Depoorter, E., Bull, M. J., Peeters, C., Coenye, T., Vandamme, P., and Mahenthiralingam, E. (2016). Burkholderia: an update on taxonomy and biotechnological potential as antibiotic producers. Appl. Microbiol. Biotechnol. 100, 5215–5229. doi: 10.1007/s00253-016-7520-x

PubMed Abstract | CrossRef Full Text | Google Scholar

Du, Z., and Bramlage, W. J. (1992). Modified thiobarbituric acid assay for measuring lipid oxidation in sugar-rich plant tissue extracts. J. Agric. Food Chem. 40, 1566–1570. doi: 10.1021/jf00021a018

CrossRef Full Text | Google Scholar

Dworkin, M., and Foster, J. (1958). Experiments with some microorganisms which utilize ethane and hydrogen. J. Bacteriol. 75, 592–603. doi: 10.1128/jb.75.5.592-603.1958

PubMed Abstract | CrossRef Full Text | Google Scholar

Farag, M. A., Ryu, C.-M., Sumner, L. W., and Paré, P. W. (2006). GC–MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants. Phytochemistry 67, 2262–2268. doi: 10.1016/j.phytochem.2006.07.021

PubMed Abstract | CrossRef Full Text | Google Scholar

Farag, M. A., Zhang, H., and Ryu, C.-M. (2013). Dynamic chemical communication between plants and bacteria through airborne signals: induced resistance by bacterial volatiles. J. Chem. Ecol. 39, 1007–1018. doi: 10.1007/s10886-013-0317-9

PubMed Abstract | CrossRef Full Text | Google Scholar

Fincheira, P., Parada, M., and Quiroz, A. (2017). Volatile organic compounds stimulate plant growing and seed germination of Lactuca sativa. J. Soil Sci. Plant Nutr. 17, 853–867. doi: 10.4067/S0718-95162017000400002

CrossRef Full Text | Google Scholar

Fincheira, P., and Quiroz, A. (2018). Microbial volatiles as plant growth inducers. Microbiol. Res. 208, 63–75. doi: 10.1016/j.micres.2018.01.002

PubMed Abstract | CrossRef Full Text | Google Scholar

Fincheira, P., Quiroz, A., Tortella, G., Diez, M. C., and Rubilar, O. (2021). Current advances in plant-microbe communication via volatile organic compounds as an innovative strategy to improve plant growth. Microbiol. Res. 247:126726. doi: 10.1016/j.micres.2021.126726

PubMed Abstract | CrossRef Full Text | Google Scholar

Gouda, S., Kerry, R. G., Das, G., Paramithiotis, S., Shin, H.-S., and Patra, J. K. (2018). Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture. Microbiol. Res. 206, 131–140. doi: 10.1016/j.micres.2017.08.016

PubMed Abstract | CrossRef Full Text | Google Scholar

Groenhagen, U., Baumgartner, R., Bailly, A., Gardiner, A., Eberl, L., Schulz, S., et al. (2013). Production of bioactive volatiles by different Burkholderia ambifaria strains. J. Chem. Ecol. 39, 892–906. doi: 10.1007/s10886-013-0315-y

PubMed Abstract | CrossRef Full Text | Google Scholar

Grover, M., Bodhankar, S., Sharma, A., Sharma, P., Singh, J., and Nain, L. (2021). PGPR mediated alterations in root traits: way toward sustainable crop production. Front. Sustain. Food Syst. 4:618230. doi: 10.3389/fsufs.2020.618230

CrossRef Full Text | Google Scholar

Gu, Y.-Q., Mo, M.-H., Zhou, J.-P., Zou, C.-S., and Zhang, K.-Q. (2007). Evaluation and identification of potential organic nematicidal volatiles from soil bacteria. Soil Biol. Biochem. 39, 2567–2575. doi: 10.1016/j.soilbio.2007.05.011

CrossRef Full Text | Google Scholar

Gutiérrez-Luna, F. M., López-Bucio, J., Altamirano-Hernández, J., Valencia-Cantero, E., de la Cruz, H. R., and Macías-Rodríguez, L. (2010). Plant growth-promoting rhizobacteria modulate root-system architecture in Arabidopsis thaliana through volatile organic compound emission. Symbiosis 51, 75–83. doi: 10.1007/s13199-010-0066-2

CrossRef Full Text | Google Scholar

Gutteridge, J. (1995). Lipid peroxidation and antioxidants as biomarkers of tissue damage. Clin. Chem. 41, 1819–1828. doi: 10.1093/clinchem/41.12.1819

CrossRef Full Text | Google Scholar

Ha Tran, D. M., Nguyen, T. T. M., Hung, S. H., Huang, E., and Huang, C. C. (2021). Roles of plant growth-promoting rhizobacteria (PGPR) in stimulating salinity stress defense in plants: A review. Int. J. Mol. Sci. 22:3154. doi: 10.3390/ijms22063154

PubMed Abstract | CrossRef Full Text | Google Scholar

Han, C., Wu, G., Liu, A., and Wang, Y. (2012). Screening and identification of an antagonistic Burkholderia pyrrocinia strain A12 and its growth-promoting effects on tobacco seedling. Acta Agric. Zhejiangensis 24, 880–885.

Google Scholar

Han, L., Zhang, H., Xu, Y., Li, Y., and Zhou, J. (2021). Biological characteristics and salt-tolerant plant growth-promoting effects of an ACC deaminase-producing Burkholderia pyrrocinia strain isolated from the tea rhizosphere. Arch. Microbiol. 203, 2279–2290. doi: 10.1007/s00203-021-02204-x

PubMed Abstract | CrossRef Full Text | Google Scholar

Hasanuzzaman, M., Nahar, K., and Fujita, M. (2013). “Plant response to salt stress and role of exogenous protectants to mitigate salt-induced damages,” in Ecophysiology and Responses of Plants under Salt Stress eds. Ahmad, P., Azooz, M., Prasad, M., New York, NY: Springer. 47-4_2.

Google Scholar

Hmaeid, N., Wali, M., Mahmoud, O. M. B., Pueyo, J. J., Ghnaya, T., and Abdelly, C. (2019). Efficient rhizobacteria promote growth and alleviate NaCl-induced stress in the plant species Sulla carnosa. Appl. Soil Ecol. 133, 104–113. doi: 10.1016/j.apsoil.2018.09.011

CrossRef Full Text | Google Scholar

Hu, S., Tao, H., Qian, Q., and Guo, L. (2012). Genetics and molecular breeding for salt-tolerance in rice. Rice Genomics Genet. 3, 39–49. doi: 10.5376/rgg.2012.03.0007

CrossRef Full Text | Google Scholar

Ikram, M., Ali, N., Jan, G., Jan, F. G., Rahman, I. U., Iqbal, A., et al. (2018). IAA producing fungal endophyte Penicillium roqueforti Thom., enhances stress tolerance and nutrients uptake in wheat plants grown on heavy metal contaminated soils. PLoS One 13:e0208150. doi: 10.1371/journal.pone.0208150

PubMed Abstract | CrossRef Full Text | Google Scholar

Inskeep, W. P., and Bloom, P. R. (1985). Extinction coefficients of chlorophyll a and b in N, N-dimethylformamide and 80% acetone. Plant Physiol. 77, 483–485. doi: 10.1104/pp.77.2.483

PubMed Abstract | CrossRef Full Text | Google Scholar

Kai, M., and Piechulla, B. (2009). Plant growth promotion due to rhizobacterial volatiles–an effect of CO2? FEBS Lett. 583, 3473–3477. doi: 10.1016/j.febslet.2009.09.053

PubMed Abstract | CrossRef Full Text | Google Scholar

Kumar, S., Beena, A., Awana, M., and Singh, A. (2017). Physiological, biochemical, epigenetic and molecular analyses of wheat (Triticum aestivum) genotypes with contrasting salt tolerance. Front. Plant Sci. 8:1151. doi: 10.3389/fpls.2017.01151

PubMed Abstract | CrossRef Full Text | Google Scholar

Kumar, S., and Singh, A. (2016). Epigenetic regulation of abiotic stress tolerance in plants. Adv. Plants Agric. Res. 5, 517–521. doi: 10.15406/apar.2016.05.00179

CrossRef Full Text | Google Scholar

Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K. (2018). MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35, 1547–1549. doi: 10.1093/molbev/msy096

PubMed Abstract | CrossRef Full Text | Google Scholar

Kwon, Y. S., Ryu, C.-M., Lee, S., Park, H. B., Han, K. S., Lee, J. H., et al. (2010). Proteome analysis of Arabidopsis seedlings exposed to bacterial volatiles. Planta 232, 1355–1370. doi: 10.1007/s00425-010-1259-x

PubMed Abstract | CrossRef Full Text | Google Scholar

Ledger, T., Rojas, S., Timmermann, T., Pinedo, I., Poupin, M. J., Garrido, T., et al. (2016). Volatile-mediated effects predominate in Paraburkholderia phytofirmans growth promotion and salt stress tolerance of Arabidopsis thaliana. Front. Microbiol. 7:1838. doi: 10.3389/fmicb.2016.01838

PubMed Abstract | CrossRef Full Text | Google Scholar

Lee, B., Farag, M. A., Park, H. B., Kloepper, J. W., Lee, S. H., and Ryu, C.-M. (2012). Induced resistance by a long-chain bacterial volatile: elicitation of plant systemic defense by a C13 volatile produced by Paenibacillus polymyxa. PLoS One 7:e48744. doi: 10.1371/journal.pone.0048744

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, Y., Shao, J., Xie, Y., Jia, L., Fu, Y., Xu, Z., et al. (2021). Volatile compounds from beneficial rhizobacteria Bacillus spp. promote periodic lateral root development in Arabidopsis. Plant Cell Environ. 44, 1663–1678. doi: 10.1111/pce.14021

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, X., Sun, P., Zhang, Y., Jin, C., and Guan, C. (2020a). A novel PGPR strain Kocuria rhizophila Y1 enhances salt stress tolerance in maize by regulating phytohormone levels, nutrient acquisition, redox potential, ion homeostasis, photosynthetic capacity and stress-responsive genes expression. Environ. Exp. Bot. 174:104023. doi: 10.1016/j.envexpbot.2020.104023

CrossRef Full Text | Google Scholar

Li, X., Wang, X., Shi, X., Wang, B., Li, M., Wang, Q., et al. (2020b). Antifungal efect of volatile organic compounds from Bacillus velezensis CT32 against Verticillium dahliae and Fusarium oxysporum. PRO 8:1674. doi: 10.3390/pr8121674

CrossRef Full Text | Google Scholar

LiPuma, J. J., and Mahenthiralingam, E. (1999). Commercial use of Burkholderia cepacia. Emerg. Infect. Dis. 5, 305–306. doi: 10.3201/eid0502.990226

PubMed Abstract | CrossRef Full Text | Google Scholar

Liu, S., Tian, Y., Jia, M., Lu, X., Yue, L., Zhao, X., et al. (2020b). Induction of salt tolerance in Arabidopsis thaliana by volatiles from Bacillus amyloliquefaciens FZB42 via the jasmonic acid signaling pathway. Front. Microbiol. 11:562934. doi: 10.3389/fmicb.2020.562934

PubMed Abstract | CrossRef Full Text | Google Scholar

Liu, A., Zhang, P., Bai, B., Bai, F., Jin, T., and Ren, J. (2020a). Volatile organic compounds of endophytic Burkholderia pyrrocinia strain JK-SH007 promote disease resistance in poplar. Plant Dis. 104, 1610–1620. doi: 10.1094/PDIS-11-19-2366-RE

PubMed Abstract | CrossRef Full Text | Google Scholar

Mahenthiralingam, E., Bischof, J., Byrne, S. K., Radomski, C., Davies, J. E., Av-Gay, Y., et al. (2000). DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III. J. Clin. Microbiol. 38, 3165–3173. doi: 10.1128/JCM.38.9.3165-3173.2000

PubMed Abstract | CrossRef Full Text | Google Scholar

Megdiche, W., Hessini, K., Gharbi, F., Jaleel, C. A., Ksouri, R., and Abdelly, C. (2008). Photosynthesis and photosystem 2 efficiency of two salt-adapted halophytic seashore Cakile maritima ecotypes. Photosynthetica 46, 410–419. doi: 10.1007/s11099-008-0073-1

CrossRef Full Text | Google Scholar

Meier-Kolthoff, J. P., Carbasse, J. S., Peinado-Olarte, R. L., and Göker, M. (2022). TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes. Nucleic Acids Res. 50, D801–D807. doi: 10.1093/nar/gkab902

PubMed Abstract | CrossRef Full Text | Google Scholar

Meldau, D. G., Long, H. H., and Baldwin, I. T. (2012). A native plant growth promoting bacterium, Bacillus sp. B55, rescues growth performance of an ethylene-insensitive plant genotype in nature. Front. Plant Sci. 3:112. doi: 10.3389/fpls.2012.00112

CrossRef Full Text | Google Scholar

Meldau, D. G., Meldau, S., Hoang, L. H., Underberg, S., Wünsche, H., and Baldwin, I. T. (2013). Dimethyl disulfide produced by the naturally associated bacterium Bacillus sp B55 promotes Nicotiana attenuata growth by enhancing sulfur nutrition. Plant Cell 25, 2731–2747. doi: 10.1105/tpc.113.114744

PubMed Abstract | CrossRef Full Text | Google Scholar

Mukherjee, S., and Choudhuri, M. (1983). Implications of water stress-induced changes in the levels of endogenous ascorbic acid and hydrogen peroxide in Vigna seedlings. Physiol. Plant. 58, 166–170. doi: 10.1111/j.1399-3054.1983.tb04162.x

CrossRef Full Text | Google Scholar

Mukhopadhyay, R., Sarkar, B., Jat, H. S., Sharma, P. C., and Bolan, N. S. (2021). Soil salinity under climate change: challenges for sustainable agriculture and food security. J. Environ. Manag. 280:111736. doi: 10.1016/j.jenvman.2020.111736

PubMed Abstract | CrossRef Full Text | Google Scholar

Nawaz, A., Shahbaz, M., Imran, A., Marghoob, M. U., Imtiaz, M., and Mubeen, F. (2020). Potential of salt tolerant PGPR in growth and yield augmentation of wheat (Triticum aestivum L.) under saline conditions. Front. Microbiol. 11:2019. doi: 10.3389/fmicb.2020.02019

CrossRef Full Text | Google Scholar

Nawrath, T., Mgode, G. F., Weetjens, B., Kaufmann, S. H., and Schulz, S. (2012). The volatiles of pathogenic and nonpathogenic mycobacteria and related bacteria. Beilstein J. Org. Chem. 8, 290–299. doi: 10.3762/bjoc.8.31

PubMed Abstract | CrossRef Full Text | Google Scholar

Park, Y. S., Dutta, S., Ann, M., Raaijmakers, J. M., and Park, K. (2015). Promotion of plant growth by Pseudomonas fluorescens strain SS101 via novel volatile organic compounds. Biochem. Biophys. Res. Commun. 461, 361–365. doi: 10.1016/j.bbrc.2015.04.039

PubMed Abstract | CrossRef Full Text | Google Scholar

Penrose, D. M., and Glick, B. R. (2003). Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiol. Plant. 118, 10–15. doi: 10.1034/j.1399-3054.2003.00086.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Pikovskaya, R. (1948). Mobilization of phosphorus in soil in connection with vital activity of some microbial species. Mikrobiologiya 17, 362–370. doi: 10.3389/fpls.2015.00466

CrossRef Full Text | Google Scholar

Pinedo, I., Ledger, T., Greve, M., and Poupin, M. J. (2015). Burkholderia phytofirmans PsJN induces long-term metabolic and transcriptional changes involved in Arabidopsis thaliana salt tolerance. Front. Plant Sci. 6:466.

Google Scholar

Pitcher, D., Saunders, N., and Owen, R. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8, 151–156. doi: 10.1111/j.1472-765X.1989.tb00262.x

CrossRef Full Text | Google Scholar

Popova, A. A., Koksharova, O. A., Lipasova, V. A., Zaitseva, J. V., Katkova-Zhukotskaya, O. A., Eremina, S. I., et al. (2014). Inhibitory and toxic effects of volatiles emitted by strains of Pseudomonas and Serratia on growth and survival of selected microorganisms, Caenorhabditis elegans, and Drosophila melanogaster. Biomed. Res. Int. 2014:125704. doi: 10.1155/2014/125704

CrossRef Full Text | Google Scholar

Porra, R. J. (2002). The chequered history of the development and use of simultaneous equations for the accurate determination of chlorophylls a and b. Photosynth. Res. 73, 149–156. doi: 10.1023/A:1020470224740

CrossRef Full Text | Google Scholar

Rath, M., Mitchell, T., and Gold, S. (2018). Volatiles produced by Bacillus mojavensis RRC101 act as plant growth modulators and are strongly culture-dependent. Microbiol. Res. 208, 76–84. doi: 10.1016/j.micres.2017.12.014

PubMed Abstract | CrossRef Full Text | Google Scholar

Raza, W., Ling, N., Yang, L., Huang, Q., and Shen, Q. (2016). Response of tomato wilt pathogen Ralstonia solanacearum to the volatile organic compounds produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9. Sci. Rep. 6, 1–13. doi: 10.1038/srep24856

CrossRef Full Text | Google Scholar

Ren, J. H., Ye, J. R., Liu, H., Xu, X. L., and Wu, X. Q. (2011). Isolation and characterization of a new Burkholderia pyrrocinia strain JK-SH007 as a potential biocontrol agent. World J. Microbiol. Biotechnol. 27, 2203–2215. doi: 10.1007/s11274-011-0686-6

CrossRef Full Text | Google Scholar

Rivas, M. Á., Friero, I., Alarcón, M. V., and Salguero, J. (2022). Auxin-cytokinin balance shapes maize root architecture by controlling primary root elongation and lateral root development. Front. Plant Sci. 13:836592. doi: 10.3389/fpls.2022.836592

PubMed Abstract | CrossRef Full Text | Google Scholar

Ryu, C. M., Farag, M. A., Hu, C. H., Reddy, M. S., Wei, H. X., Paré, P. W., et al. (2003). Bacterial volatiles promote growth in Arabidopsis. Proc. Natl. Acad. Sci. 100, 4927–4932. doi: 10.1073/pnas.0730845100

PubMed Abstract | CrossRef Full Text | Google Scholar

Sarkar, A., Pramanik, K., Mitra, S., Soren, T., and Maiti, T. K. (2018). Enhancement of growth and salt tolerance of rice seedlings by ACC deaminase-producing Burkholderia sp. MTCC 12259. J. Plant Physiol. 231, 434–442. doi: 10.1016/j.jplph.2018.10.010

PubMed Abstract | CrossRef Full Text | Google Scholar

Sharifi, R., Jeon, J. S., and Ryu, C. M. (2021). Belowground plant–microbe communications via volatile compounds. J. Exp. Bot. 73, 463–486. doi: 10.1093/jxb/erab465

PubMed Abstract | CrossRef Full Text | Google Scholar

Sharma, A., Singh, R. K., Singh, P., Vaishnav, A., Guo, D.-J., Verma, K. K., et al. (2021). Insights into the bacterial and nitric oxide-induced salt tolerance in sugarcane and their growth-promoting abilities. Microorganisms 9:2203. doi: 10.3390/microorganisms9112203

PubMed Abstract | CrossRef Full Text | Google Scholar

Shrivastava, P., and Kumar, R. (2015). Soil salinity: a serious environmental issue and plant growth promoting bacteria as one of the tools for its alleviation. Saudi J. Biol. Sci. 22, 123–131. doi: 10.1016/j.sjbs.2014.12.001

PubMed Abstract | CrossRef Full Text | Google Scholar

Tahir, H. A., Gu, Q., Wu, H., Raza, W., Hanif, A., Wu, L., et al. (2017). Plant growth promotion by volatile organic compounds produced by Bacillus subtilis SYST2. Front. Microbiol. 8:171. doi: 10.3389/fmicb.2017.00171

CrossRef Full Text | Google Scholar

Timm, C. M., Lloyd, E. P., Egan, A., Mariner, R., and Karig, D. (2018). Direct growth of bacteria in headspace vials allows for screening of volatiles by gas chromatography mass spectrometry. Front. Microbiol. 9:491. doi: 10.3389/fmicb.2018.00491

PubMed Abstract | CrossRef Full Text | Google Scholar

Tyagi, S., Kim, K., Cho, M., and Lee, K. J. (2019). Volatile dimethyl disulfide affects root system architecture of Arabidopsis via modulation of canonical auxin signaling pathways. Environ. Sustain. 2, 211–216. doi: 10.1007/s42398-019-00060-6

CrossRef Full Text | Google Scholar

Upadhyay, S. K., Singh, J. S., Saxena, A. K., and Singh, D. P. (2012). Impact of PGPR inoculation on growth and antioxidant status of wheat under saline conditions. Plant Biol. 14, 605–611. doi: 10.1111/j.1438-8677.2011.00533.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Vandamme, P., Henry, D., Coenye, T., Nzula, S., Vancanneyt, M., LiPuma, J. J., et al. (2002). Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol. Med. Microbiol. 33, 143–149. doi: 10.1111/j.1574-695X.2002.tb00584.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Veselova, M. A., Plyuta, V. A., and Khmel, I. A. (2019). Volatile compounds of bacterial origin: structure, biosynthesis, and biological activity. Microbiology 88, 261–274. doi: 10.1134/S0026261719030160

CrossRef Full Text | Google Scholar

Wang, H., Inukai, Y., and Yamauchi, A. (2006). Root development and nutrient uptake. Crit. Rev. Plant Sci. 25, 279–301. doi: 10.1080/07352680600709917

CrossRef Full Text | Google Scholar

Wang, S., Na, X., Yang, L., Liang, C., He, L., Jin, J., et al. (2021). Bacillus megaterium strain WW1211 promotes plant growth and lateral root initiation via regulation of auxin biosynthesis and redistribution. Plant Soil 466, 491–504. doi: 10.1007/s11104-021-05055-z

CrossRef Full Text | Google Scholar

Weise, T., Kai, M., and Piechulla, B. (2013). Bacterial ammonia causes significant plant growth inhibition. PLoS One 8:e63538. doi: 10.1371/journal.pone.0063538

PubMed Abstract | CrossRef Full Text | Google Scholar

Wu, Q. S., He, X. H., Zou, Y. N., Liu, C. Y., Xiao, J., and Li, Y. (2012). Arbuscular mycorrhizas alter root system architecture of citrus tangerine through regulating metabolism of endogenous polyamines. Plant Growth Regul. 68, 27–35. doi: 10.1007/s10725-012-9690-6

CrossRef Full Text | Google Scholar

Yan, Q., Simmons, T. R., Cordell, W. T., Hernández Lozada, N. J., Breckner, C. J., Chen, X., et al. (2020). Metabolic engineering of β-oxidation to leverage thioesterases for production of 2-heptanone, 2-nonanone and 2-undecanone. Metab. Eng. 61, 335–343. doi: 10.1016/j.ymben.2020.05.008

PubMed Abstract | CrossRef Full Text | Google Scholar

Yang, J., Kloepper, J. W., and Ryu, C. M. (2009). Rhizosphere bacteria help plants tolerate abiotic stress. Trends Plant Sci. 14, 1–4. doi: 10.1016/j.tplants.2008.10.004

PubMed Abstract | CrossRef Full Text | Google Scholar

Zang, D., Wang, J., Zhang, X., Liu, Z., and Wang, Y. (2019). Arabidopsis heat shock transcription factor HSFA7b positively mediates salt stress tolerance by binding to an E-box-like motif to regulate gene expression. J. Exp. Bot. 70, 5355–5374. doi: 10.1093/jxb/erz261

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, H., Kim, M.-S., Krishnamachari, V., Payton, P., Sun, Y., Grimson, M., et al. (2007). Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis. Planta 226, 839–851. doi: 10.1007/s00425-007-0530-2

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, H., Xie, X., Kim, M. S., Kornyeyev, D. A., Holaday, S., and Paré, P. W. (2008). Soil bacteria augment Arabidopsis photosynthesis by decreasing glucose sensing and abscisic acid levels in planta. Plant J. 56, 264–273. doi: 10.1111/j.1365-313X.2008.03593.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Zhang, C., Zhang, M., Yan, Z., Wang, F., Yuan, X., Zhao, S., et al. (2021). CO2 is a key constituent of the plant growth-promoting volatiles generated by bacteria in a sealed system. Plant Cell Rep. 40, 59–68. doi: 10.1007/s00299-020-02610-3

PubMed Abstract | CrossRef Full Text | Google Scholar

Keywords: plant growth-promoting rhizobacteria, Burkholderia pyrrocinia, volatile compounds, plant growth promotion, induced systemic salt tolerance

Citation: Luo H, Riu M, Ryu C-M and Yu JM (2022) Volatile organic compounds emitted by Burkholderia pyrrocinia CNUC9 trigger induced systemic salt tolerance in Arabidopsis thaliana. Front. Microbiol. 13:1050901. doi: 10.3389/fmicb.2022.1050901

Received: 22 September 2022; Accepted: 02 November 2022;
Published: 17 November 2022.

Edited by:

Yunpeng Liu, Chinese Academy of Agricultural Sciences, China

Reviewed by:

Sheng Qin, Jiangsu Normal University, China
Poulami Chatterjee, University of California, United States

Copyright © 2022 Luo, Riu, Ryu and Yu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Jun Myoung Yu, junyu@cnu.ac.kr

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