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Chrizelle W. Beukes1Marike Palmer1Puseletso Manyaka1Wai Y. Chan1Juanita R. Avontuur1Elritha van Zyl1Marcel Huntemann2
Alicia Clum2Manoj Pillay2Krishnaveni Palaniappan2Neha Varghese2
Natalia Mikhailova2Dimitrios Stamatis2T. B. K. Reddy2Chris Daum2Nicole Shapiro2Victor Markowitz2
Natalia Ivanova2
Nikos Kyrpides2
Tanja Woyke2
Jochen Blom3
William B. Whitman4
Stephanus N. Venter1*Emma T. Steenkamp1- 1Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa
- 2DOE Joint Genome Institute, Walnut Creek, CA, United States
- 3Bioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, Germany
- 4Department of Microbiology, University of Georgia, Athens, GA, United States
A corrigendum on
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
by Beukes, C. W., Palmer, M., Manyaka, P., Chan, W. Y., Avontuur, J. R., van Zyl, E., et al. (2017) Front. Microbiol. 8:1154. doi: 10.3389/fmicb.2017.01154
In the original article, there was a spelling mistake in a species name contained in Table 3 as published. As the information in this table is required for validation of the novel species combinations, this mistake has been corrected from “Caballeronia ptereocthonis comb. nov.” to “Caballeronia ptereochthonis comb. nov.” and “Burkholderia ptereocthonis” to “Burkholderia ptereochthonis”. The corrected Table 3 appears below.
TABLE 3
Table 3. Summary of the novel combinations proposed for 13 species of Caballeronia.
Also, an additional section titled “Description of New Species Combinations” was added to the original article. The section contains a short protologue for each proposed novel combination to conform to the rules of the Bacterial Code of Nomenclature. The protologues appear below.
The authors apologize for this error. The original article has been updated.
Description of New Species Combinations
Description of Caballeronia arvi comb. nov.
Caballeronia arvi (ar'vi. L. gen. n. arvi of a field).
Basonym: Burkholderia arvi Peeters et al., 2016.
The description is as provided in Peeters et al. (2016). Analysis of 106 conserved protein-coding sequences have shown that this species is placed in the genus Caballeronia with very high support.
The type strain is LMG 29317T (= CCUG 68412T = MAN34T).
Description of Caballeronia arationis comb. nov.
Caballeronia arationis (a.ra.ti.o'nis. L. gen. n. arationis from a field).
Basonym: Burkholderia arationis Peeters et al., 2016.
The description is as provided in Peeters et al. (2016). Phylogenetic analysis of 106 conserved protein-coding loci clearly showed that there is high support for the placement of this species in Caballeronia.
The type strain is LMG 29324T (=CCUG 68405T).
Description of Caballeronia calidae comb. nov.
Caballeronia calidae (ca'li.dae. L. gen. n. calidae from warm water, because this strain was isolated from pond water in a tropical garden).
Basonym: Burkholderia calidae Peeters et al., 2016.
The description is as provided in Peeters et al. (2016). Phylogenetic analysis of 106 conserved protein-coding loci showed (with a high degree of certainty) that this species belongs in the genus Caballeronia.
The type strain is LMG 29321T (=CCUG 68408T).
Description of Caballeronia catudaia comb. nov.
Caballeronia catudaia (ca.tu.da'ia. Gr. adj. catudaios subterraneous; N. L. fem. adj. catudaia, earth-born).
Basonym: Burkholderia catudaia Peeters et al., 2016.
The description is as provided in Peeters et al. (2016). Our analyses of 106 conserved protein-coding loci clearly indicate that this species has high support for being included in Caballeronia.
The type strain is LMG 29318T (=CCUG 68411T).
Description of Caballeronia concitans comb. nov.
Caballeronia concitans (con.ci'tans. L. fem. part. pres. concitans disturbing, upsetting; because the isolation of this bacterium from human sources, including blood, further disturbs the image of this lineage of Burkholderia species as benign bacteria).
Basonym: Burkholderia concitans Peeters et al., 2016.
The description is as provided in Peeters et al. (2016). Analysis of 106 conserved protein-coding loci showed that this species has high support for belonging to the genus Caballeronia.
The type strain is LMG 29315T (=CCUG 68414T = AU12121T).
Description of Caballeronia fortuita comb. nov.
Caballeronia fortuita (for.tu.i'ta. L. fem. adj. fortuita accidental, unpremeditated; referring to its fortuitous isolation when searching for Burkholderia caledonica endophytes).
Basonym: Burkholderia fortuita Peeters et al., 2016.
The description is as described in Peeters et al. (2016). Our analysis of 106 conserved protein-coding loci clearly show this species is included in the genus Caballeronia.
The type strain is LMG 29320T (=CCUG 68409T).
Description of Caballeronia glebae comb. nov.
Caballeronia glebae (gle'bae. L. gen. n. glebae from a lump or clod of earth, soil).
Basonym: Burkholderia glebae Peeters et al., 2016.
The description appears in Peeters et al. (2016). Analysis of 106 conserved protein-coding loci shows high support for the placement of this species in the genus Caballeronia.
The type strain is LMG 29325T (=CCUG 68404T).
Description of Caballeronia hypogeia comb. nov.
Caballeronia hypogeia (hy.po.ge'ia. Gr. adj. hypogeios subterraneous; N. L. fem. adj. hypogeia, subterraneous, earth-born).
Basonym: Burkholderia hypogeia Peeters et al., 2016.
The description appears in Peeters et al. (2016). Our analysis of 106 conserved protein-coding loci supports the inclusion of this species into the genus Caballeronia.
The type strain is LMG 29322T (=CCUG 68407T).
Description of Caballeronia pedi comb. nov.
Caballeronia pedi (pe'di. Gr. n. pedon soil, earth; N. L. gen. n. pedi, from soil).
Basonym: Burkholderia pedi Peeters et al. 2016.
The description is listed in Peeters et al. (2016). The analysis of 106 conserved protein-coding loci, showed that this species is placed in Caballeronia.
The type strain is LMG 29323T (=CCUG 68406T).
Description of Caballeronia peredens comb. nov.
Caballeronia peredens (per.e'dens. L. fem. part. pres. peredens consuming, devouring; referring to the capacity of this bacterium to degrade fenitrothion).
Basonym: Burkholderia peredens Peeters et al., 2016.
The description is as discussed in Peeters et al. (2016). Our analysis of 106 conserved protein-coding loci clearly shows that this species should be included in the genus Caballeronia.
The type strain is LMG 29314T (=CCUG 68415T = NF100T).
Description of Caballeronia ptereochthonis comb. nov.
Caballeronia ptereochthonis (pte.re.o.chtho'nis Gr. n. pteris fern; Gr. n. chthon soil; N. L. gen. n. ptereochthonis, from fern soil).
Basonym: Burkholderia ptereochthonis Peeters et al., 2016.
The description appears in Peeters et al. (2016). The analysis of 106 conserved protein-coding loci clearly shows that this species should be included in Caballeronia.
The type strain is LMG 29326T (=CCUG 68403T).
Description of Caballeronia temeraria comb. nov.
Caballeronia temeraria (te.me.ra'ri.a. L. fem. adj. temeraria accidental, inconsiderate; referring to its accidental isolation when searching for Burkholderia caledonica endophytes).
Basonym: Burkholderia temeraria Peeters et al., 2016.
The description of this species appears in Peeters et al. (2016). The analysis of 106 conserved protein-coding loci here, shows that this species is included in Caballeronia with high support.
The type strain is LMG 29319T (=CCUG 68410T).
Description of Caballeronia turbans comb. nov.
Caballeronia turbans (tur'bans. L. fem. part. pres. turbans disturbing, agitating, because the isolation of this bacterium from human pleural fluid further disturbs the image of this lineage of Burkholderia species as benign bacteria).
Basonym: Burkholderia turbans Peeters et al., 2016.
The original species description appears in Peeters et al. (2016). Our analysis of 106 conserved protein-coding loci shows that this species forms part of Caballeronia.
The type strain is LMG 29316T (=CCUG 68413T = HI4065T).
Conflict of Interest Statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
References
Peeters, C., Meier-Kolthoff, J. P., Verheyde, B., De Brandt, E., Cooper, V. S., and Vandamme, P. (2016). Phylogenomic study of Burkholderia glathei-like organisms, proposal of 13 novel Burkholderia species and emended descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae. Front. Microbiol. 7:877. doi: 10.3389/fmicb.2016.00877
Keywords: Burkholderia, Paraburkholderia, Caballeronia, phylogenomics, Robbsia andropogonis, Burkholderia rhizoxinica
Citation: Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN and Steenkamp ET (2018) Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato. Front. Microbiol. 9:373. doi: 10.3389/fmicb.2018.00373
Received: 13 February 2018; Accepted: 19 February 2018;
Published: 02 March 2018.
Edited and reviewed by: Frontiers in Microbiology Editorial Office, Frontiers, Switzerland
Copyright © 2018 Beukes, Palmer, Manyaka, Chan, Avontuur, van Zyl, Huntemann, Clum, Pillay, Palaniappan, Varghese, Mikhailova, Stamatis, Reddy, Daum, Shapiro, Markowitz, Ivanova, Kyrpides, Woyke, Blom, Whitman, Venter and Steenkamp. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Stephanus N. Venter, ZmFudXMudmVudGVyQHVwLmFjLnph