Rowena Ng
Jacqueline Harris
Tjitske Kleefstra
Angela T. Morgan
Brittany Simpson- 1Department of Neuropsychology, Kennedy Krieger Institute, Baltimore, MD, United States
- 2Department of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD, United States
- 3Kennedy Krieger Institute, Baltimore, MD, United States
- 4Department of Genetic Medicine, Pediatrics and Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, United States
- 5Department of Human Genetics and Psychiatry, Radboud University Medical Center, Venray, Netherlands
- 6Centre of Excellence for Neuropsychiatry, Vincent van Gogh Institute for Psychiatry, Venray, Netherlands
- 7Speech and Language, Murdoch Children’s Research Institute, Parkville, VIC, Australia
- 8Department of Audiology and Speech Pathology, University of Melbourne, Parkville, VIC, Australia
- 9Speech Genomics Clinic, Royal Children’s Hospital, Parkville, VIC, Australia
- 10Cincinnati Children’s Hospital Medical Center, Department of Pediatrics, Division of Human Genetics, University of Cincinnati College of Medicine, Cincinnati, OH, United States
Editorial on the Research Topic
Characterizing the neurobehavioral phenotype of mendelian disorders of epigenetic machinery
Mendelian disorders of the epigenetic machinery (MDEMs) are a group of neurodevelopmental disorders caused by pathogenic variants in genes that encode components of the epigenetic apparatus–writers, erasers or readers of DNA or histone marks and chromatin remodelers (Fahrner and Bjornsson, 2014). These disorders share some common features, including dysregulated growth (71%), and developmental delay and/or intellectual disability (83%) with the majority presenting with both cognitive and growth abnormalities (Fahrner and Bjornsson, 2019). With the increased application of gene sequencing in research and clinical use, the number of identified target genes related to MDEMs have expanded to nearly four times in size since 2015 - with 85 disorders currently known (Harris et al., 2023). Accordingly, there has been a growing recognition that collectively MDEMs may represent a sizeable proportion of individuals with neurodevelopmental disability. Towards this end, research in MDEMs and the associated epigenetic modification–heritable alterations in gene expression without modifications to the DNA sequence–can shed light on the role of epigenetic regulation in the pathogenesis of developmental disorders in addition to typical brain development and growth (Ng et al., 2023).
Systematic research is necessary to better understand the neurobehavioral profile of individual MDEMs, which is an essential step towards disease-specific care management and the development of targeted epigenetic therapies, and to elucidate how epigenetic modification control cognition and behavior in general. To begin moving towards this direction, the goal for this Research Topic was to gather a Research Topic of complementary original research and case series from investigators focused on expanding the cognitive and/or behavioral phenotypes of individual MDEMs.
Kalinousky et al. highlight a study focused on behavioral functioning in individuals with Kabuki syndrome (KS) (MIM #417920), a MDEM caused by a variant in KMT2D or KDM6A which encodes histone methylation proteins. These authors found a high proportion of child and adult participants with KS met clinical threshold for anxiety based on caregiver-informant inventories, although many already received pharmacologic treatment.
Two publications extend the clinical and cognitive phenotypes of Wiedemann Steiner syndrome (WSS) (MIM #605130), a MDEM caused by a heterozygous variant in KMT2A, another histone methyltransferase. Ng et al. report a prospective investigation that employed a battery of parent-rating inventories to index day-to-day behavior functioning in affected individuals. Findings revealed elevated rates of hyperactivity, affective symptoms, behavior regulation challenges, and disruptive sleep behaviors in individuals with WSS. Lin et al. report clinical features of 11 Chinese children with WSS and novel KMT2A variants, in comparison to 41 previously reported cases from China and other large cohort studies from Europe and North America. These authors report elevated rate of short stature combined with less aggressive behaviors and feeding difficulties in their sample when compared to WSS cohorts from France and United States. Authors also reported growth trends observed in patients following growth hormone therapy, noting potential therapeutic benefits.
Qu’d et al. report findings from parent questionnaires focused on neuropsychiatric symptoms and adaptive functioning among a large cohort with Rubinstein-Taybi syndrome (RTS) (MIM #180849), a MDEM most commonly caused by a pathogenic variant in CREBBP or EP300, histone acetyltransferases. In this study, over 80% of their sample reported a clinical level of behavioral problems with more elevated symptoms seen in school-age than later adolescence or adulthood. Interestingly, anxiety disorder was the most common neuropsychiatric diagnosis observed - affecting about a third of the cohort consistently across the life span. The patterns of results from Ng et al., Kalinousky et al., and Qu’d et al. may suggest some overlapping behavioral features (e.g., anxiety) among MDEMs with defects involving the histone machinery which warrant further investigation.
Finally, Nakagawa et al. provides a summary review of the neurobehavioral characteristics seen in mice models of Intellectual Disorder Autosomal Dominant 23 (IDD23) (MIM #615761), with pathogenic variants in SETD5, a gene essential in regulating histone acetylation. Cognitive features seen in the mice include atypical fear learning and memory. Aberrant social behaviors such as reduced vocalizations, failure in nest building, and repetitive behaviors were observed regardless of the size of gene deletion, suggesting haploinsufficiency in SETD5 may contribute to autistic behaviors. Generally, these reported behavioral patterns in mice with SETD5 variants are in line with trends seen in limited cohort investigations involving human subjects, which suggest elevated behavioral and neuropsychiatric problems inclusive of autism-related behaviors (∼64%) and nearly universal observations of developmental delay (∼93%) (Grozeva et al., 2014; Powis et al., 2018).
In brief, the compilation of publications included in this Research Topic represents the early cornerstone of behavioral phenotyping efforts to understand the role of epigenetic regulation in the origins of neurodevelopmental disorders. Future directions include systematic cross-MDEM investigations, as overlapping neurological patterns may implicate the disease-causing pathways that resulted in commonly affected neural networks (Larizza and Finelli, 2019), and subsequently identification of biomarker targets for epigenetic treatments. Indeed, emergent trends from behavioral investigations suggest select chromatin-related disorders show superimposed cognitive features such as speech/language deficits (St. John et al., 2023), pointing to the molecular effects on neural systems dedicated to language and oromotor functioning. Finally, with more in-depth delineation of syndrome-specific neurobehavioral profiles, investigations focused on correlations between epigenotype and phenotype of individual MDEMs are promising next steps to identify clinical biomarkers of developmental disabilities such as episignatures (i.e., unique DNA methylation patterns) (Sadikovic et al., 2020), which may be utilized to improve early screening, diagnosis and therapeutic response of neurodevelopmental disabilities.
Author contributions
RN: Writing–original draft, Writing–review and editing. JH: Writing–review and editing. TK: Writing–review and editing. AM: Writing–review and editing. BS: Writing–review and editing.
Funding
The author(s) declare financial support was received for the research, authorship, and/or publication of this article. RN receives funding from the Wiedemann-Steiner Syndrome Foundation and KAT6 Foundation. JH receives funding from NIH/NICHD 1K23HD101646, the Kabuki Syndrome Foundation, the Rubinstein-Taybi Syndrome Children’s Foundation, and the Sekel-Breidenstein Family Fund. RN and JH receive support from the Kennedy Krieger/Johns Hopkins IDDRC NIH P50HD103538 and ICTR (UL1 TR003098). BS receives support from the Division of Human Genetics at Cincinnati Children’s Hospital Medical Center.
Conflict of interest
JH receives research funding for Kabuki syndrome from Oryzon Genomics.
The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.
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References
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Fahrner, J. A., and Bjornsson, H. T. (2019). Mendelian disorders of the epigenetic machinery: postnatal malleability and therapeutic prospects. Hum. Mol. Genet. 28 (R2), R254–R264. doi:10.1093/hmg/ddz174
Grozeva, D., Carss, K., Spasic-Boskovic, O., Parker, M. J., Archer, H., Firth, H. V., et al. (2014). De novo loss-of-function mutations in SETD5, encoding a methyltransferase in a 3p25 microdeletion syndrome critical region, cause intellectual disability. Am. J. Hum. Genet. 94 (4), 618–624. doi:10.1016/j.ajhg.2014.03.006
Harris, J. R., Gao, C. W., Britton, J. F., Applegate, C. D., Bjornsson, H. T., and Fahrner, J. A. (2023). Five years of experience in the Epigenetics and Chromatin Clinic: what have we learned and where do we go from here? Hum. Genet. 2023, 1–18. doi:10.1007/s00439-023-02537-1
Larizza, L., and Finelli, P. (2019). Developmental disorders with intellectual disability driven by chromatin dysregulation: clinical overlaps and molecular mechanisms. Clin. Genet. 95 (2), 231–240. doi:10.1111/cge.13365
Ng, R., Kalinousky, A., and Harris, J. (2023). Epigenetics of cognition and behavior: insights from Mendelian disorders of epigenetic machinery. J. Neurodev. Disord. 15 (1), 16–11. doi:10.1186/s11689-023-09482-0
Powis, Z., Farwell Hagman, K. D., Mroske, C., McWalter, K., Cohen, J. S., Colombo, R., et al. (2018). Expansion and further delineation of the SETD5 phenotype leading to global developmental delay, variable dysmorphic features, and reduced penetrance. Clin. Genet. 93 (4), 752–761. doi:10.1111/cge.13132
Sadikovic, B., Levy, M. A., and Aref-Eshghi, E. (2020). Functional annotation of genomic variation: DNA methylation episignatures in neurodevelopmental Mendelian disorders. Hum. Mol. Genet. 29 (R1), R27–R32. doi:10.1093/hmg/ddaa144
St John, M., Tripathi, T., Morgan, A. T., and Amo, D. J. (2023). To speak may draw on epigenetic writing and reading: unravelling the complexity of speech and language outcomes across chromatin-related neurodevelopmental disorders. Neurosci. Biobehav. Rev. 152, 105293. doi:10.1016/j.neubiorev.2023.105293
Keywords: epigenetics, neurodevelopment, cognition, behavior, genetic disorder, neurodevelopmental disorders
Citation: Ng R, Harris J, Kleefstra T, Morgan AT and Simpson B (2023) Editorial: Characterizing the neurobehavioral phenotype of mendelian disorders of epigenetic machinery. Front. Genet. 14:1338078. doi: 10.3389/fgene.2023.1338078
Received: 14 November 2023; Accepted: 27 November 2023;
Published: 05 December 2023.
Edited and reviewed by:
Jordi Pérez-Tur, Spanish National Research Council (CSIC), SpainCopyright © 2023 Ng, Harris, Kleefstra, Morgan and Simpson. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Rowena Ng, bmdyQGtlbm5lZHlrcmllZ2VyLm9yZw==