ARF: a versatile DNA damage response ally at the crossroads of development and tumorigenesis

Alternative reading frame (ARF) is a tumor suppressor protein that senses oncogenic and other stressogenic signals. It can trigger p53-dependent and -independent responses with cell cycle arrest and apoptosis induction being the most prominent ones. Other ARF activities, particularly p53-independent ones, that could help in understanding cancer development and provide potential therapeutic exploitation are underrated. Although ARF is generally not expressed in normal tissues, it is essential for ocular and male germ cells development. The underlying mechanism(s) in these processes, while not clearly defined, point toward a functional link between ARF, DNA damage and angiogenesis. Based on a recent study from our group demonstrating a functional interplay between ataxia-telangiectasia mutated (ATM) and ARF during carcinogenesis, we discuss the role of ARF at the crossroads of cancer and developmental processes.

Introduction

The ARF (p14^ARF in humans, p19^ARF in mice) tumor suppressor is encoded by the INK4A/ARF locus that also harbors another onco-suppressor, namely the cyclin-dependent kinase inhibitor p16^INK4A (Quelle et al., 1995; Sherr, 2006). The p16^INK4A protein maintains pRB in an active form to inhibit E2F activity (Tsantoulis and Gorgoulis, 2005; Sherr, 2006). In this way S-phase entry and therefore cell division is prevented (Sherr, 2006). On the other hand, ARF is a “sensor” of various stresses including oncogenic ones, like aberrant expression of Myc, E1A and RAS (de Stanchina et al., 1998; Zindy et al., 1998; Palmero et al., 1999). Other stresses that can also activate ARF are oxidative stress and heat shock (Damalas et al., 2011; Liontos et al., 2012). In response it can act both in p53-dependent and -independent manners (Weber et al., 2000; Kotsinas et al., 2014), triggering either growth arrest or apoptosis to counteract abnormal cell proliferation (Sherr, 2006). Apart from cancer (Sherr, 2006), accumulating data highlight ARF as a versatile protein implicated in various physiological processes including developmental ones (Thornton et al., 2005; Gromley et al., 2009; Churchman et al., 2011), immunomodulation (Través et al., 2012) and ribosomal ribonucleic acid (rRNA) maturation (Sugimoto et al., 2003), as well as pathological ones, such as atherogenesis (González-Navarro et al., 2010). Most of the best known ARF functions are p53-dependent ones (Sherr, 2006), while independent activities seem to be underrated.

Deficiency of ARF or p53, has revealed different phenotypes in mice. Specifically, ARF-null animals mainly develop sarcomas, whereas p53-null animals are predominantly characterized by the evolvement of lymphomas (Kamijo et al., 1999). This finding was among the first experimental indications that ARF and p53 can signal independently of each other and not necessarily in a strict linear signaling pathway. Therefore, they may fulfill different tasks in tumor surveillance. Moreover, recent evidence from our group has highlighted the functional significance of a cross-talk among ARF and ATM (Velimezi et al., 2013; Kotsinas et al., 2014) and how ARF can act as an “auxiliary” tumor suppressive mechanism throughout cancer progression in case the DDR pathway is compromised (Velimezi et al., 2013).

In various normal tissues ARF is not expressed. Striking exceptions are the developing oculus (eye), testicular tissue and umbilical arteries (Thornton et al., 2005; Freeman-Anderson et al., 2009; Gromley et al., 2009; Churchman et al., 2011). The underlying mechanism(s) taking place in these tissues, while not clearly defined, point toward a functional link between ARF, DNA damage and angiogenesis.

Considering the ATM and ARF interplay in carcinogenesis (Velimezi et al., 2013), we discuss in this article the role of ARF at the crossroads of cancer and developmental processes. We present the current knowledge regarding the role of ARF in development, particularly during spermatogenesis and ocular development in mice. Furthermore, we provide data (including unpublished ones) consolidating the notion that the interference with vascular dynamics accounts for a novel, inherent p53-independent tumor suppressive property of ARF that could be therapeutically exploited in p53-deficient tumors.

The Role of ARF in Male Germ Cell Development: A Matter of Preserving Genomic Integrity

Spermatogenesis is a spatio-temporally coordinated process by which undifferentiated spermatogonia (i.e., the stem cell population of germinal cells residing on the basement membrane of semiferous tubules) evolve into spermatocytes in the lumen through a series of mitotic and meiotic cellular divisions (Cooke and Saunders, 2002). In mice, Gromley et al. (2009) reported that in this developmental process ARF is selectively expressed in mitotic spermatogonia, but not in intratubular spermatocytes that stain positive for meiotic markers (Figure 1). Intriguingly, in the absence of ARF the testicles of mice exhibit atrophy and produce much lower quantity of sperm compared to wild-type animals. These phenotypic changes are accompanied by increased levels of apoptosis in germ cells during all their developmental stages. Of note, abolishment of this transient expression of ARF during spermatogenesis is sufficient to compromise this developmental process throughout the whole reproductive life of mice (Gromley et al., 2009).

FIGURE 1

FIGURE 1. Schematic presentation of the spermatogenesis stages across the wall of a seminiferous tubule and the interrelations with ATM and ARF. (A) Spermatogonia are found in close proximity to the basement membrane of a seminiferous tubule. A subpopulation of spermatogonia exhibits stem cell ability and self-renews via mitotic divisions. ATM kinase is essential for their stemness (symbolized by a semicircular shape). Some of the spermatogonia eventually differentiate into primary spermatocytes. The latter, undergo meiosis to give rise to secondary spermatocytes which in turn, form spermatids (connected via cytoplasmic bridges). Spermatids engage a series of cytodifferentiative programs and sperm is finally formed. ARF expression in spermatogonia is required in order to prevent the occurrence of DNA damage in meiotic primary spermatocytes (at the stage of pachytene) through participating in a feed-forward program. (B) In the absence of ARF, genomic integrity in primary spermatocytes is threatened and the production of mature sperm released in the lumen is compromised. (C) Upon ATM deficiency, spermatogonia loose their genomic integrity and ARF undergoes upregulation. Consequently, an ARF-mediated p53/p21^WAF1/Cip1 growth restrictive pathway counteracts spermatogonial stemness. Due to the fact that ATM deficiency hampers normal spermatocytic meiotic progression (at prophase I), sperm production is compromised (Barlow et al., 1996, 1998; Xu et al., 1996). The different subtypes of spermatogonial cells, Sertoli cells that support spermatogonia, stages and phases of meiosis, the different stages of spermatid differentiation as well as ploidy of cells are not shown here for reasons of simplicity (Colored lines depict ATM and/or ARF effects on spermatogenesis. Dashed colored lines denote weak effect or weak activation. Red lines represent adverse effect, while green ones correspond to physiologic functions).

Subsequent experiments carried out by the same research group demonstrated that ARF is essential for normal meiotic progression and survival of spermatocytes via initiation of a feed-forward program in their progenitors, the spermatogonia. Interestingly, ARF expression in spermatogonia did not exert an anti-proliferative effect, as they also expressed cyclin D1. Testicular atrophy and reduced production of mature sperm in ARF-deficient mice was not mechanistically related to a disturbed pituitary-gonadal axis and deregulated levels of circulating FSH or LH. Rather, in the absence of ARF a marked increase in the number of spermatocytes undergoing p53-dependent apoptosis at the stage of pachytene of prophase I was observed (Churchman et al., 2011).

Of note, during HR in meiosis the topoisomerase-II like Spo11 enzyme normally causes DSBs, which in turn trigger the activation of ATM and the generation of γ-H2AX foci selectively at the leptotene and zygotene stages (Inagaki et al., 2010). At the pachytene stage when synapsis of homologous chromosomes has been completed, γ-H2AX foci are normally not detected. However, in situ analyses showed that in an ARF deficient background, the number of γ-H2AX foci in pachytene spermatocytes is significantly increased (Churchman et al., 2011). The latter observation was therefore suggestive of meiotic defects that have deleterious effects on spermatocytic genomic integrity. Additional evidence for meiotic abnormalities included the identification of asynaptic regions as well as decreased number of foci of the Rad51 and Dmc1 recombinases known to be associated with the repair of DSBs that occur during HR. Overall, the authors concluded that ARF through a yet poorly understood mechanism, interferes with HR to preserve the fidelity of meiosis in spermatocytes and to protect them from DNA damage and p53-dependent apoptosis (Churchman et al., 2011). Whether the apoptotic death of spermatocytes is a consequence of DNA damage per se or not, remains to be elucidated. Inhibition rather than induction of p53-dependent apoptosis by ARF is a unique feature of male germ cells and reveals an opposite to the well-established p53-mediated pro-apoptotic role of ARF in somatic cells (Lowe and Sherr, 2003).

Importantly, ARF is not the only DNA damage-related protein that interferes with the spermatogonial program (Figure 1). The DDR kinase ATM is actually essential for the maintenance of undifferentiated spermatogonia and for retaining their stemness (Barlow et al., 1998; Takubo et al., 2008). In murine testicles, ATM deficiency progressively results in the depletion of undifferentiated spermatogonia. This is functionally associated with cell cycle arrest, loss of genomic integrity and defects at the pre-meiotic level (Barlow et al., 1996, 1998; Elson et al., 1996; Xu et al., 1996; Takubo et al., 2008). Mechanistically, the absence of ATM is linked to the accumulation of DNA damage and the activation of an ARF/p53/p21^WAF1/Cip1 – dependent growth restrictive pathway. Notably, in transplantation assays where spermatogonia are delivered into the seminiferous tubules of mutant mouse strains that exhibit defective spermatogenesis, p21^WAF1/Cip1 deficiency is able to restore spermatogonial repopulation ability in an ATM-null background (Takubo et al., 2008).

Taken together, all the above data pinpoint that both ARF and ATM are critical factors for the maintenance of spermatogonia and survival of their progeny during male germ cell development (Figure 1; Barlow et al., 1996; Takubo et al., 2008; Churchman et al., 2011). This common feature parallels with their same function as tumor suppressors in somatic cells. Nevertheless, the imposed outcomes are different in each cell type, suggesting a functional bimodality. In somatic cells ATM and ARF induce cell growth restrictive or apoptotic routes, whereas in spermatogonia they do not interfere with their ability to proliferate. It is rather their depletion that leads to such cellular responses. A further issue, stemmed from the ability of ATM to regulate ARF turnover (Velimezi et al., 2013), is whether this functional link may operate in male germ cells. As demonstrated, in response to irradiation ARF protein in spermatogonia is markedly down-regulated (Velimezi et al., 2013). Evidence was also provided by Takubo et al. (2008) showing that in ATM null spermatogonia there is a higher activation of ARF, supporting the interconnection between ATM and ARF. Nevertheless, details on how this link endorses this developmental process require further clarifications.

ARF as a Regulator of the Vascular Network in Development and Tumorigenesis

Apart from the male germ cell development in mice as presented above, ARF also plays a central role in the murine ocular development. In mice models it was shown that ARF is required for the maturation of the primary vitreous into the secondary vitreous; an avascular jelly like substance within the developing oculus. The expression of ARF in the vitreous is postnatally induced up to P5, in order to trigger the involution of HVS, a transient anatomical entity in the developing oculus that has to regress during P6–P10 (McKeller et al., 2002). ARF promotes HVS involution through restricting the accumulation of mural cells that cover the vessels and contributes to the preservation of their stability in a PDGFRβ-dependent/p53-independent manner (Silva et al., 2005; Gromley et al., 2009). Overall, two models have been proposed to explain the mechanistic basis by which ARF controls the vascular network dynamics. According to the first model, when ARF is induced by unknown yet upstream developmental signals it suppresses PDGFRβ expression via uncharacterized mediators. In this way, ARF restricts mural cell proliferation. In the second scenario, ARF acts as a cell fate determinant during the maturation of mural cells to shut off PDGFRβ expression and force them to differentiate into a type of perivascular cells that selectively support transient vessels (Thornton et al., 2005).

Notably, phenotypic characteristics exhibited by ARF deficient mice are also found in the developmental human ocular disease termed PHPV and include microphthalmia and degenerative alterations in lens (cataractogenesis; McKeller et al., 2002). Overall, these data pinpoint to the existence of an ARF-mediated tightly regulated spatio-temporal angiogenic developmental process. It appears that ARF’s role in vascular evolvement is not solely restricted to developmental processes. Rather, data corroborate the notion that ARF exhibits a wider activity in the control of vascular dynamics, which are functionally linked to tumor progression.

“Angiogenic switch” is a prominent feature of tumor progression (Bergers and Benjamin, 2003). In line with the notion that ARF plays a wide role in the modulation of pathways affecting vasculature, an inverse correlation among MVD and ARF in human clinical colon cancer samples has been reported (Kawagishi et al., 2010). Furthermore, ARF/p53 deficient MEFs challenged with oncogenic RAS^V12 when injected as xenografts produce tumors that grow faster relative to similarly treated cells, but retrovirally infected with ARF (Kawagishi et al., 2010). Tumor sections showed in the latter case a lower immunostaining for CD31, a neovascular marker. Exploring mechanistically their findings Kawagishi et al. (2010) determined that ARF suppresses the expression of VEGFA in a p53-independent manner in mouse cell lines. This involves the inhibition of VEGFA translation via the IRES of VEGFA.

Based on our recent finding that ATM controls ARF turnover (Velimezi et al., 2013), we sought to expand these observations in human tumors with inactive p53 and explore for potential therapeutic utilization. Treating the NSCLC cell line H1299 and cervical carcinoma HeLa cells, which do not express functional p53, with the ATM kinase inhibitor Ku55933 in order to stabilize ARF (Velimezi et al., 2013) we observed an inverse relationship among the expression of ARF and VEGF protein (Figure S1A). VEGF plays a central role in tumor angiogenesis (Crinò and Metro, 2014), while ARF can signal in a p53-independent fashion and hence, serve as a “back-up” barrier to tumorigenesis in case that p53 is inactivated (Velimezi et al., 2013). Therefore, upregulating ARF via inhibition of ATM activity may be exploited in p53-deficient human tumors as a novel anti-angiogenic therapeutic approach. In a next step, we investigated whether ARF opposes tumor angiogenesis in vivo. To address this issue H1299 cells were xenografted in immunocompromised mice. Sections from the generated tumors were stained with an antibody specific for the endothelial marker CD31, to evaluate MVD. As shown in Figure S1B, MVD is markedly decreased (>twofold) in tumors injected with a lentiviral vector expressing shRNA targeting ATM (ctl-shRNA/Lenti-shATM); a manipulation which upregulates ARF (Velimezi et al., 2013). The observed reduction in MVD was actually an ARF-dependent phenomenon, because MVD in H1299-shARF xenografts upon knocking down of ATM (shARF/Lenti-shATM) was found to be comparable to that estimated in ARF-expressing ones without lentivirus-mediated silencing of ATM kinase (ctl-shRNA/Lenti-ctl). Therefore, stabilization of ARF in the absence of ATM activity exhibits anti-angiogenetic effects in vivo, corroborating the claim that this p53-independent ATM/ARF axis could be therapeutically harnessed.

In our experiments we did not examine whether the observed ARF-mediated down-regulation of VEGF levels is associated with an inhibition of IRES-(in)dependent translation of VEGF transcript (Kawagishi et al., 2010), or if it is due to a translation-independent mechanism. For instance, HIF1α is a well-known transcriptional activator of VEGF and human ARF has been demonstrated to mediate the nucleolar sequestration of HIF1α, thereby hindering its ability to drive the expression of its target genes (Fatyol and Szalay, 2001). It would be a challenging future task to uncover the whole mechanistic spectrum that underlies the observed mutual exclusive expression among ARF and VEGF.

In a murine model of multi-stage pancreatic neuroendrocrine tumorigenesis where the SV-40 T-antigen is expressed in β cells, ARF deficiency was found to significantly accelerate tumor progression through promoting the angiogenic switch (Ulanet and Hanahan, 2010). In the absence of ARF the tumor burden was increased fivefold along with a higher number of angiogenic lesions. From a mechanistic perspective, in this malignancy ARF seems to act via engaging mainly p53-independent routes, while VEGF was not involved (Ulanet and Hanahan, 2010). A more recent study showed that ARF blocks the development of angiosarcomas associated with the exposure to the carcinogen urothene, possibly in a p53-dependent fashion (Busch et al., 2012). Intriguingly, it was hypothesized that ARF affects the proliferation of endothelial cells in adult mice. Hence, the inhibition of tumor angiogenesis and vascular malignancy possibly represent two discrete aspects of ARF’s tumor-suppressive activity.

Conclusions and Prospects

Collectively, we highlight underrated functions of ARF, positioned at the crossroads of tumor suppression (Weber et al., 2000; Tago et al., 2005; Kawagishi et al., 2010) and development (McKeller et al., 2002; Churchman et al., 2011; Figure 2), that could be exploited at the therapeutic level, especially in tumors with non-functional p53.

FIGURE 2

FIGURE 2. ARF impinges both on developmental processes (male germ cell development and ocular development in mice) and tumor angiogenesis. ARF is essential for normal spermatogenesis in mice possibly through interacting with the meiotic repair machinery. In the ocular development of the mouse, ARF is required for the involution of the hyaloid vascular system (HVS); a transient network of vessels that provides nutrients to the developing oculus. This is accomplished via a pathway in which ARF blocks platelet-derived growth factor receptor β (PDGFRβ)-dependent signaling which in turn, is necessary for the investment of vessels by mural cells and their maintenance. This may also be possibly regulated via the ARF-dependent inhibition of internal ribosome entry site (IRES)-mediated translation of PDGFRβ. ARF can also suppress the IRES-mediated translation of vascular endothelial growth factor A (VEGFA), thereby inhibiting tumor angiogenesis. Unpublished data indicate that the stabilization of endogenous ARF upon inhibition of ataxia-telangiectasia mutated (ATM) kinase activity can also result in a decrease in VEGF levels; although it is not known whether the underlying mechanism involves the suppression of IRES-mediated translation of VEGF or an IRES-independent route. It may even involve a route that is not associated with the control of VEGF at the translational level. (The ATM/ARF/VEGF pathway is shown by lines.) ATM kinase itself, independently of ARF, has also been incriminated in pathological angiogenesis in adult mouse oculus and cancer (Kerr and Byzova, 2012), but these effects are not depicted here for reasons of clarity. (HA, hyaloid artery.)

ARF as an onco-suppressor impedes carcinogenesis not only through interfering with cell proliferation and induction of apoptosis, but also via affecting other cancer-promoting processes such as angiogenesis (Kawagishi et al., 2010; Ulanet and Hanahan, 2010). In this context, in tumors with non-functional p53 the potential to upregulate ARF in an ATM manner (Velimezi et al., 2013), could be utilized as an anti-angiogenic “tool” in cancer management (Figure S1). This prospective therapeutic modality may be enhanced if combined with anti-VEGF or other anti-angiogenic factors, like tyrosine kinase inhibitors, that are currently used (Ferrara et al., 2004; Randall and Monk, 2010; Eisen et al., 2012). On one hand, such a dual treatment might lead to a synergistic outcome, possibly lethality, and on the other hand, it may allow the reduction of the administration doses of such compounds to avoid side-effects (Randall and Monk, 2010; Eisen et al., 2012). It should be noted that although the ATM inhibitor Ku55933 is highly selective toward ATM, its bioavailiability is low due to its pharmacokinetic properties (Golding et al., 2009). However, new ATM inhibitors, such as KU-60019, exhibiting a higher pharmacological profile have been released (Golding et al., 2009), rendering the proposed therapeutic approach feasible.

Another option in order to therapeutically exploit the aforementioned ARF/VEGF pathway would be the usage of synthetic ARF peptides comprising ARF’s amino-terminal residues 2–14 that mediate all the biological effects of ARF, including the anti-growth ones (Saporita et al., 2007). The therapeutic exploitation of the p53-independent ARF/VEGF axis is of major clinical importance since p53 is inactivated in ∼50% of human cancers (Sherr, 2006).

A further aspect that needs to be addressed is the role of ARF in spermatogenesis. Deciphering the poorly defined ability of ARF to cross-talk with components of the HR mechanism during this process could provide new insights on other underrated functions of ARF. Specifically, in the case of male germ cells ARF contributes to their genomic integrity during their maturation, but the exact mechanism(s) is still lacking (Churchman et al., 2011). Even more, as ATM also participates in this process and since they are functionally linked (Velimezi et al., 2013), the exact way their function is coordinated throughout this process remains to be defined.

Finally, taking into consideration the role of ARF not only in the involution of HVS in the developing oculus (Thornton et al., 2005) but also in the involution of the mammary gland (Yi et al., 2004), it is plausible that ARF plays an even wider role than that of a tumor suppressor by acting as a potent “tissue remodeling factor” controlling transient histological structures. Studies toward this direction are essential and could open a new research field related with ARF.

Conflict of Interest Statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Acknowledgments

This project has received funding from the European Union’s Seventh Framework Program for research, technological development and demonstration under grant agreement No 284460. Dr Athanassios Kotsinas is a recipient of an Empeirikeion Foundation fellowship.

Supplementary Material

The Supplementary Material for this article can be found online at: http://www.frontiersin.org/journal/10.3389/fgene.2014.00236/abstract

Figure S1 | ARF demonstrates a p53-independent anti-angiogenic activity in a malignant environment. (A) Evidence for a p53-independent ATM/ARF/VEGF pathway. Human ARF protein (mouse monoclonal antibody, 1:100 dilution, DCS-240, #ab49166, Abcam) was up-regulated in the presence of the selective ATM inhibitor Ku55933 (Ku, #118500, Calbiochem, MERCK) and as previously shown biologically effective (Velimezi et al., 2013). This was associated with a decrease in VEGF protein (rabbit polyclonal antibody, 1:100 dilution, A-20, #sc-152, SantaCruz) levels as assessed by immunoblot analysis in human cancer cells H1299 and HeLa, both of which are devoid of functional p53. Actin (rabbit polyclonal antibody, 1:1000 dilution, Cell Signaling Technology Inc., #4967) served as a loading control. (ATMi: treatment with the Ku55933 chemical inhibition of ATM activity). (B) ARF-dependent decreased microvessel density in a malignant environment. The non-small cell lung cancer (NSCLC) cells H1299, which do not express a functional p53 were xenografted in immunocompromised mice and formed tumors (Velimezi et al., 2013). Immunohistochemical (IHC) analysis was carried out using an anti-CD31 antibody in order to evaluate mean microvessel density (MVD) in sections from tumor tissue. MVD is more than twofold decreased in tumors that were injected with a lentiviral vector expressing short-hairpin (sh) RNA targeting ATM (ctl-shRNA/Lenti-shATM) where ARF is known to be upregulated. On the contrary, the MVD in H1299-shARF xenografts, where ATM has been silenced (shARF/Lenti-shATM), is not decreased. Rather, it is comparable to those estimated in ARF-expressing xenografts without lentivirus-mediated silencing of ATM kinase (ctl-shRNA/Lenti-ctl).

Abbreviations

ARF, alternative reading frame; ATM, ataxia-telangiectasia mutated; DDR, DNA damage response; DMSO, dimethyl sulfoxide; DSBs, doubled-strand breaks; FSH, follicle-stimulating hormone; HA, hyaloid artery; HIF1α, hypoxia-inducible factor 1α; HR, homologous recombination; HVS, hyaloid vascular system; IRES, internal ribosome entry sequence; LH, luteinizing hormone; MEFs, mouse embryonic fibroblasts; MVD, microvessel density; NPM/B23, nucleophosmin; NSCLC, non-small cell lung cancer; P, postnatal day; PDGFβ, platelet-derived growth factor β; PDGFRβ, platelet-derived growth factor receptor β; PHPV, persistent hyperplastic primary vitreous; pRb, retinoblastoma protein; sh, short-hairpin; VEGF, vascular endothelial growth factor; YFP, yellow fluorescent protein.

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