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Commentary: Association between the miR-146a rs2910164 polymorphism and childhood acute lymphoblastic leukemia susceptibility in an Asian population
Dehua Zou
Jingwen Yin
Zhonglv Ye3†
Qiaoli Zeng
Yajun Wang- 1Maternal and Child Research Institute, Shunde Women and Children's Hospital, Guangdong Medical University, Foshan, China
- 2Department of Psychiatry, Affiliated Hospital of Guangdong Medical University, Zhanjiang, China
- 3Department of Pediatrics, Affiliated Hospital of Guangdong Medical University, Zhanjiang, China
- 4Clinical Research Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang, China
Background: miR-146a has been demonstrated to be involved in normal hematopoiesis and the pathogenesis of many hematological malignancies by inhibiting the expression of its targets. Rs2910164(G>C) may modify the expression of the miR-146a gene, which might influence an individual's predisposition to childhood acute lymphoblastic leukemia (ALL). However, inconsistent findings have been reported on the association between the rs2910164(G>C) polymorphism and the risk of childhood ALL.
Methods: A comprehensive meta-analysis was performed to accurately estimate the association between the miR-146a rs2910164 polymorphism and childhood ALL among four different genetic models.
Results: This meta-analysis included Asian studies with a total of 1,543 patients and 1,816 controls. We observed a significant difference between patients and controls for the additive model (CC vs. GG: OR = 1.598, 95% CI: 1.003–2.545, P = 0.049) using a random effects model. Meanwhile, there was a trend of increased childhood ALL risk in the dominant model (CC + CG vs. GG: OR = 1.501, 95% CI: 0.976–2.307, P = 0.065), recessive model (CC vs. GG + CG: OR = 1.142, 95% CI: 0.946–1.380, P = 0.168) and allele model (C vs. G: OR = 1.217, 95% CI: 0.987–1.500, P = 0.066) between patients and controls.
Conclusions: Our findings suggest that the miR-146a rs2910164 CC genotype was significantly associated with childhood ALL susceptibility.
Introduction
Acute lymphoblastic leukemia (ALL) is a very common malignancy among children, accounting for ~75% of leukemia cases among children (Pui et al., 2015). The incidence of this disease has continued to increase worldwide over the past several decades (Terracini, 2011). ALL is a clonal malignant disease that is characterized by an uncontrolled proliferation of immature cells, but its etiology remains unknown. MiRNAs are small non-coding RNAs that monitor gene expression post-transcriptionally. Previous studies have shown that miRNAs may play an important role in leukemogenesis (Schotte et al., 2010; Bottoni and Calin, 2013; Yan et al., 2013; Yin et al., 2014).
miR-146a has been identified as a modulator of cell differentiation and innate and adaptive immunity (Boldin et al., 2011; Rusca and Monticelli, 2011; Ghani et al., 2012; Labbaye and Testa, 2012). The abnormal expression of miR-146a is frequently observed in human diseases, such as inflammatory disorders and cancers (He et al., 2005; Iriyama et al., 2012; Petrovic et al., 2017; Shomali et al., 2017; Tan et al., 2018). Previous studies have reported that miR-146a is significantly increased in the peripheral blood samples of pediatric patients with ALL (Duyu et al., 2014; Yan et al., 2017), thus providing valuable insights into potential diagnostic or prognostic biomarkers. Lin showed that the absence of miR-146a can lead to leukemia in mice (Lin et al., 2015), which indicated that miR-146a might act as a leukemia suppressor. In addition, miR-146a might be involved in the progression of ALL by mediating the inflammatory response. Nuclear factor κB (NF-κB) signaling has been reported to be constitutively activated in a variety of leukemic cells. miR-146a could be upregulated by NF-κB (Justiniano et al., 2013; Taganov et al., 2015) and simultaneously inhibit the expression of TRAF6 and IRAK1, which are upstream regulatory proteins of NF-κB. Therefore, a negative feedback regulatory pathway is formed in the proliferation and differentiation of hematopoietic stem cells, similar to the development of hematological malignancies (Spierings et al., 2011; Zhao et al., 2011, 2013).
In the rs2910164 polymorphism, which is located in pre-miR-146a, the nucleotide substitution from G to C leads to a transformation from a G:U pair to a C:U mismatch in the stem structure of the miR-146a precursor and results in a reduced amount of mature miR-146a (Yue et al., 2011; Palmieri et al., 2014). Jazdaewski found that mature miR-146a with the C allele is less able to inhibit the target genes IRAK1 and TRAF6 than the G allele (Jazdzewski et al., 2008), which seems to be associated with the development of ALL.
A significant association of miR-146a rs2910164 with childhood ALL has been reported in an Iranian population (Hasani et al., 2014). This result was successfully replicated in two Chinese case-control studies (Liu et al., 2018; Pei et al., 2020). In contrast, three studies from Thailand, India and China failed to replicate the results (Chansing et al., 2016; Devanandan et al., 2019; Xue et al., 2019). Considering the conflicting results, whether miR-146a rs2910164 is associated with childhood ALL in Asian populations remains to be elucidated. In this study, we performed a meta-analysis to estimate the association of miR-146a rs2910164 with childhood ALL among four different genetic models in an Asian population.
Materials and Methods
This study was pursuant to the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) guidelines. The PRISMA checklist is provided in Supplementary Table 1.
Literature Search
The PubMed, Google Scholar, WanFang and Chinese National Knowledge Infrastructure databases were systematically searched for relevant studies using the words “miR-146a or microRNA-146a” “rs2910164” “leukemia” with no language or time restrictions. All studies were assessed by reading the title and abstract and irrelevant studies were excluded. Then, the full texts of the remaining studies were assessed to determine their eligibility.
Inclusion and Exclusion Criteria
The study inclusion criteria were as follows: (a) case-control or cohort studies that assessed the association between the miR-146a rs2910164 polymorphism and the risk of childhood ALL; (b) studies in which all patients had been diagnosed with ALL by morphology, immunology, cytogenetic and molecular biology (MICM) in accordance with one of the following criteria: (i) bone marrow morphology standard: according to the 2016 WHO diagnostic criteria, the original and immature lymphocytes in bone marrow are not <20%, (ii) if the original and immature lymphocytes were <20%, a molecular diagnosis method was used to determine whether ALL pathogenic genes existed; (c) studies with data that could be used to estimate odds ratios (ORs) with corresponding 95% confidence intervals (CIs); and (d) studies published before April 30, 2020.
The exclusion criteria were as follows: (a) the study was not a case–control study; (b) the study was not related to acute lymphoblastic leukemia or 146a rs2910164; (c) the study lacked particular genotype data; (d) the genotype distribution of the control subjects was not in a Hardy–Weinberg equilibrium (HWE).
Data Extraction
The following data were independently extracted from included studies and entered into a database to ensure the veracity of the data: first author's name, year of publication, population, genotyping techniques, number of patients and controls, genotype distribution, allele distribution, HWE and other information. Studies were excluded if they did not provide the above information.
Statistical Analysis
The Hardy-Weinberg equilibrium was examined by Pearson's chi-squared test. Four genetic models were used in the study: the dominant model (CC +CG vs. GG), the recessive model (CC vs. GG + CG), the additive model (CC vs. GG) and the allele model (C vs. G). Genetic heterogeneity was evaluated using the Q-test and I2-test. I2 statistics range from 0 to 100%. Significant heterogeneity was defined as P < 0.01 and I2 > 50%. ORs with corresponding 95% CIs were calculated using the fixed effects model (Mantel-Haenszel) when no significant heterogeneity was observed; otherwise, a random effects model was used. The Z-test was used to test the significance of the ORs. To check the stability of our results, sensitivity analyses for the overall effect were conducted by excluding one study at a time. Additionally, Egger's and Begg's tests were used to assess publication bias. The statistical analyses were performed using the STATA v.16.0 software (Stata Corporation, Texas, USA), Review Manager 5.0.24 (The Nordic Cochrane Center, Denmark), R version 3.6.2 (R Core Team, Vienna, Austria) and RStudio version 1.2.1 (Certified B Corporations, Boston, USA).
Results
Study Inclusion and Characteristics
A total of 113 potential studies were retrieved through the initial search. Twenty duplicates were excluded. Then, the titles and abstracts of 93 studies were screened and 73 studies were excluded. The full texts of the remaining 20 articles were evaluated; 6 were excluded because they were not case-control studies and 7 were excluded because they were not related to acute lymphoblastic leukemia or rs2910164 and 1 study was excluded because it did not provide sufficient data. A flow chart of the study selection process is shown in Figure 1. There were 6 potentially relevant papers, including 5 written in English and 1 written in Chinese. A total of 1,543 childhood ALL patients and 1,816 healthy controls were included in the meta-analysis. Table 1 shows the characteristics of each study. Power analysis was conducted with the total sample size and revealed a power of 94.6% using an OR of 1.2 for the risk allele and a MAF of 0.39 for the C allele.
FIGURE 1
Figure 1. Flow diagram of the literature search and selection.
TABLE 1
Table 1. Characteristics of the studies included in the meta-analysis.
Heterogeneity Analysis
The Cochran's Q test and the I2 statistics shown in Table 2 revealed that high heterogeneity among studies was detected in the CC +CG vs. GG (I2 = 74.9%), CC vs. GG + CG (I2 = 69.9%), CC vs. GG (I2 = 81.6%) and C vs. G (I2 = 79.5%) models for the rs2910164 polymorphism. As high heterogeneity was observed, sensitivity analysis was performed to analyze the sources of heterogeneity.
TABLE 2
Table 2. Heterogeneity analysis with random-effect model.
Sensitivity Analysis
To estimate the influence of each study on the overall OR of the four genetic models and to analyze the sources of high heterogeneity, a sensitivity analysis was performed with a random effects model. The results are shown in Figure 2. Omitting Pei's study effectively reduced heterogeneity, especially in the recessive model (CC vs. GG + CG: I2 = 0.0%, P = 0.571). The other three models showed a moderate degree of heterogeneity (CC +CG vs. GG: I2 = 66.5%, P = 0.018; CC vs. GG: I2 = 57.9%, P = 0.050; C vs. G: I2 = 54.3%, P = 0.068, respectively) (Table 3).
FIGURE 2
Figure 2. Sensitivity analysis was performed by removing one study at a time. (A) Dominant model, CC +CG vs. GG. (B) Recessive model, CC vs. GG + CG. (C) Additive model, CC vs. GG. (D) Allele model, C vs. G.
TABLE 3
Table 3. Heterogeneity analysis after omitting Pei's study with random-effect model.
Results of the Association Between miR-146a rs2910164 and Childhood ALL Meta-Analysis
After one study was omitted, there was a moderate degree of heterogeneity among studies. A fixed effects model was used to analyze the recessive model; the dominant, additive and allele models were analyzed with a random effects model. The results showed a significant difference between childhood ALL patients and controls for the additive model (CC vs. GG: OR = 1.598, 95% CI: 1.003–2.545, P = 0.049) and a trend of increased childhood ALL risk for the dominant model (CC +CG vs. GG: OR = 1.501, 95% CI: 0.976–2.307, P = 0.065), recessive model (CC vs. GG + CG: OR = 1.142, 95% CI: 0.946–1.380, P = 0.168) and allele model (C vs. G: OR = 1.217, 95% CI: 0.987–1.500, P = 0.066) between patients and controls (Figures 3, 4).
FIGURE 3
Figure 3. Meta-analysis with a fixed effects model for the association between the miR-146a rs2910164 polymorphism and childhood ALL susceptibility (recessive model, CC vs. GG + CG). OR, odds ratio; CI, confidence interval; I-squared, measure to quantify the degree of heterogeneity in meta-analyses.
FIGURE 4
Figure 4. Meta-analysis with a random effects model for the association between the miR-146a rs2910164 polymorphism and childhood ALL susceptibility. (A) Dominant model, CC +CG vs. GG. (B) Additive model, CC vs. GG. (C) Allele model, C vs. G. OR, odds ratio; CI, confidence interval; I-squared, measure to quantify the degree of heterogeneity in meta-analyses.
Publication Bias
There was no significant publication bias in any of the genetic models according to Begg's and Egger's tests (all P > 0.05, data not shown) and the funnel plot was symmetrical, as the studies did not coagulate into one quadrant of the funnel (Figure 5).
FIGURE 5
Figure 5. Funnel plot of the odds ratios in the meta-analysis.
Discussion
This meta-analysis included six Asian studies about the miR-146a rs2910164 loci and susceptibility to childhood ALL. Three studies reported an association between miR-146a rs2910164 and the risk of childhood ALL and the other three showed negative results. Moreover, the sample sizes of the individual studies were small, making it difficult to identify the possible small effect of rs2910164 on childhood ALL. Thus, this study enabled us to more accurately determine the association between rs2910164 and childhood ALL susceptibility due to the increased sample size and statistical power of the meta-analysis.
In this study, a total of 1,543 ALL patients and 1,816 controls were investigated to provide an overall evaluation of the association between the miR-146a rs2910164 polymorphism and childhood ALL. We conducted heterogeneity analysis and the results revealed that high heterogeneity among studies was detected in the four genetic models. Therefore, we explored the source of this heterogeneity via sensitivity analysis by omitting one study at a time. The results showed that omitting Pei's study could effectively reduce heterogeneity, especially in the recessive model and the other three models showed a moderate degree of heterogeneity. The most likely reasons for this heterogeneity might involve ethnicity, geographical region and the selection of control groups. The minor allele frequencies (MAFs) ranged from 0.395 to 0.495 in each study (Table 1). In Pei, Liu and Hasanis' studies, the MAF was higher than the NCBI SNP database in Asian populations. However, Pei's study sample sizes are larger than those of Liu and Hasanis. This is why Pei's study has a strong influence on heterogeneity. In addition, the populations of the control groups were not uniform. Individuals in the control group in Pei's study were determined to be cancer-free in accordance with the criteria set by the International Classification of Disease (ninth revision, defined by World Health Organization), but other studies did not explain the diagnostic criteria of the control groups. Thus, after omitting Pei's study, a fixed effects model was used to analyze the recessive model; the dominant, additive and allele models were analyzed with a random effects model. The results showed a significant difference between childhood ALL patients and controls for the additive model. Interestingly, there was a trend of increased childhood ALL risk in the other three modalities between patients and controls. These results showed that miR146a rs2910164 (G>C) was significantly associated with childhood ALL susceptibility.
In recent years, an increasing amount of data have demonstrated that miR-146a is related to normal hematopoiesis and the pathogenesis of some hematological malignancies by inhibiting the expression of its targets (Hua et al., 2011). The miR146a rs2910164 polymorphism has been extensively tested in different cancers. The rs2910164 CG or GG genotype was linked to a significantly decreased risk for lung cancer compared to the CC genotype (Jeon et al., 2014). In addition, the rs2910164 CC genotype may be devoted to breast cancer susceptibility in Europeans (Lian et al., 2012). For childhood ALL. Previous studies found that the rs2910164 CC or CG genotype significantly increased the risk of ALL (Hasani et al., 2014; Liu et al., 2018). The miR146a rs2910164 GG genotype was significantly related to a decreased susceptibility to childhood ALL (Pei et al., 2020). This study confirms that the miR146a rs2910164 polymorphism (G>C) contributes to childhood ALL susceptibility among Asians.
There are still some limitations in our study. Firstly, due to the limited examination of miR-146a rs2910164 in childhood ALL, only six studies were included in the meta-analysis. Secondly, the current research only includes Asian studies and there is an urgent need to conduct research using large samples of other ethnic groups across the world. Thirdly, the complexity of ALL, which is the result of the interaction of genetic and environmental factors, may affect the results. Among individuals with the same genotype, their susceptibility to ALL may be different due to the geographical environment lifestyle and other factors of the diverse population (Garzon et al., 2010).
In conclusion, our work contributed important evidence regarding the association between the miR-146a rs2910164 CC genotype and susceptibility to childhood ALL in an Asian population. Given the relatively small sample size of this study, more large-sample studies including different ethnic populations are needed to validate these results.
Data Availability Statement
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material.
Author Contributions
DZ, JY, ZY, and QZ were responsible for the statistical analysis, study design, and manuscript preparation. DZ and CT managed the literature searches and analyses. This study was supervised by YW, QC, and RC. All authors contributed to the article and approved the submitted version.
Funding
This study was jointly funded by the National Natural Science Foundation of China (81770034) and the Guangdong Basic and Applied Basic Research Foundation (2020A1515010240).
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Supplementary Material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fgene.2020.00886/full#supplementary-material
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Keywords: childhood acute lymphoblastic leukemia, miR-146a, rs2910164, Asian population, meta-analysis
Citation: Zou D, Yin J, Ye Z, Zeng Q, Tian C, Wang Y, Chen Q and Chen R (2020) Association Between the miR-146a Rs2910164 Polymorphism and Childhood Acute Lymphoblastic Leukemia Susceptibility in an Asian Population. Front. Genet. 11:886. doi: 10.3389/fgene.2020.00886
Received: 14 May 2020; Accepted: 20 July 2020;
Published: 02 October 2020.
Edited by:
Guiyou Liu, Tianjin Institute of Industrial Biotechnology (CAS), ChinaCopyright © 2020 Zou, Yin, Ye, Zeng, Tian, Wang, Chen and Chen. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Yajun Wang, d2FuZ3lhanVueTE5NzcmI3gwMDA0MDthbGl5dW4uY29t; Qikang Chen, MzgzMjA4NzIwJiN4MDAwNDA7cXEuY29t; Riling Chen, Y2hlbnJsMzE5JiN4MDAwNDA7MTYzLmNvbQ==
†These authors have contributed equally to this work